Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48502 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47163 * 300.00244 * 3 2 1 6 6 H 1.48496 * 109.47223 * 60.00535 * 3 2 1 7 7 C 1.38821 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.47365 * 125.58065 * 0.02562 * 9 7 2 11 11 C 1.54858 * 104.82211 * 204.66888 * 10 9 7 12 12 C 1.54915 * 101.76866 * 322.93283 * 11 10 9 13 13 N 1.46501 * 112.32999 * 273.78263 * 12 11 10 14 14 C 1.34771 * 120.00404 * 295.64096 * 13 12 11 15 15 O 1.21684 * 120.00036 * 359.97438 * 14 13 12 16 16 C 1.46729 * 120.00034 * 180.02562 * 14 13 12 17 17 O 1.35333 * 126.64404 * 359.68378 * 16 14 13 18 18 C 1.33670 * 107.68685 * 179.87577 * 17 16 14 19 19 N 1.30622 * 109.14639 * 0.39893 * 18 17 16 20 20 C 1.33686 * 109.00220 * 359.75125 * 19 18 17 21 21 C 1.50696 * 126.27693 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.47430 * 119.97535 * 21 20 19 23 23 F 1.39901 * 109.47263 * 239.97557 * 21 20 19 24 24 C 1.53586 * 109.09116 * 148.11616 * 12 11 10 25 25 C 1.54402 * 106.75093 * 247.06032 * 24 12 11 26 26 C 1.54761 * 104.07426 * 24.70175 * 25 24 12 27 27 C 1.46977 * 125.57702 * 179.97438 * 9 7 2 28 28 H 1.08998 * 111.81485 * 301.92107 * 27 9 7 29 29 H 0.97003 * 120.00066 * 359.97438 * 1 2 3 30 30 H 1.08995 * 110.37426 * 323.51020 * 10 9 7 31 31 H 1.09009 * 110.36528 * 85.83535 * 10 9 7 32 32 H 1.08997 * 110.97182 * 81.05011 * 11 10 9 33 33 H 1.09000 * 110.97176 * 204.77829 * 11 10 9 34 34 H 0.97009 * 119.99599 * 115.64063 * 13 12 11 35 35 H 1.07994 * 125.42885 * 180.14714 * 18 17 16 36 36 H 1.08995 * 109.47184 * 359.97379 * 21 20 19 37 37 H 1.08994 * 110.01917 * 6.22401 * 24 12 11 38 38 H 1.09000 * 110.01627 * 127.57375 * 24 12 11 39 39 H 1.09003 * 110.41899 * 266.11438 * 25 24 12 40 40 H 1.09004 * 110.64966 * 143.39971 * 25 24 12 41 41 H 1.09002 * 110.67220 * 203.89107 * 26 25 24 42 42 H 1.09001 * 110.66738 * 80.92326 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1412 -2.5314 -0.0005 11 6 -0.4032 -3.9238 0.6243 12 6 0.7720 -4.7540 0.0503 13 7 0.4651 -5.3163 -1.2672 14 6 -0.5202 -6.2264 -1.3986 15 8 -1.1546 -6.5815 -0.4228 16 6 -0.8272 -6.7900 -2.7181 17 8 -0.2147 -6.4899 -3.8870 18 6 -0.7899 -7.2216 -4.8464 19 7 -1.7354 -7.9524 -4.3191 20 6 -1.7888 -7.7131 -3.0049 21 6 -2.7375 -8.3476 -2.0209 22 9 -2.0070 -9.0341 -1.0450 23 9 -3.5108 -7.3538 -1.4113 24 6 1.1755 -5.8269 1.0725 25 6 2.5895 -5.4575 1.5707 26 6 2.6838 -3.9305 1.3371 27 6 1.9331 -3.7264 -0.0016 28 1 2.5871 -3.8736 -0.8611 29 1 -0.4850 0.8401 0.0004 30 1 -0.5987 -1.7507 0.6071 31 1 -0.5260 -2.4944 -1.0198 32 1 -0.3541 -3.8788 1.7122 33 1 -1.3619 -4.3249 0.2954 34 1 0.9711 -5.0335 -2.0451 35 1 -0.5190 -7.2075 -5.8917 36 1 -3.3904 -9.0460 -2.5443 37 1 0.4765 -5.8272 1.9087 38 1 1.1895 -6.8080 0.5977 39 1 3.3471 -5.9804 0.9870 40 1 2.6962 -5.6887 2.6306 41 1 3.7243 -3.6188 1.2460 42 1 2.1898 -3.3869 2.1423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992187302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = -96.902929 kcal Electronic energy + Delta-G solvation = -31270.623386 eV Core-core repulsion = 26695.279486 eV Total energy + Delta-G solvation = -4575.343901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.00255 -48.03037 -44.72064 -41.67376 -39.62091 -36.55746 -36.04923 -34.88834 -33.38130 -32.43995 -31.40817 -28.53730 -28.43769 -27.34125 -25.75365 -24.99015 -23.52019 -22.56441 -21.70977 -21.30949 -20.34027 -19.60029 -18.93495 -18.55174 -18.49561 -18.26578 -17.76984 -17.33547 -16.87348 -16.68115 -16.12064 -15.96462 -15.62389 -15.27106 -15.08815 -14.88978 -14.80286 -14.53600 -14.37619 -13.95588 -13.88375 -13.55135 -13.23682 -12.96030 -12.85278 -12.82931 -12.68354 -12.52279 -12.36611 -12.17516 -11.98442 -11.91462 -11.76004 -11.69328 -11.54224 -11.27940 -11.21442 -10.74143 -10.52463 -10.10400 -8.88118 -7.74540 -5.19648 -0.56078 1.11599 1.13170 1.48168 1.48791 1.58785 1.76803 1.92973 2.27287 2.50482 3.09277 3.13937 3.26910 3.35261 3.49426 3.59861 3.89617 3.90652 3.91033 3.92456 4.05343 4.23678 4.32951 4.37585 4.44625 4.56153 4.58645 4.76410 4.82184 4.90020 4.91832 5.07052 5.13036 5.20355 5.30612 5.43843 5.50616 5.55777 5.63778 5.81099 6.08464 6.29841 6.32347 6.85624 7.11023 7.79167 8.42883 9.27215 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015487 B = 0.003507 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.517060 B = 7982.064489 C = 8539.877930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.297 1.297 6 H -0.296 1.296 7 C -0.223 4.223 8 H 0.087 0.913 9 N -0.611 5.611 10 C 0.162 3.838 11 C -0.130 4.130 12 C 0.170 3.830 13 N -0.685 5.685 14 C 0.594 3.406 15 O -0.516 6.516 16 C -0.072 4.072 17 O -0.183 6.183 18 C 0.238 3.762 19 N -0.492 5.492 20 C -0.020 4.020 21 C 0.353 3.647 22 F -0.195 7.195 23 F -0.199 7.199 24 C -0.105 4.105 25 C -0.109 4.109 26 C -0.124 4.124 27 C 0.155 3.845 28 H 0.059 0.941 29 H 0.244 0.756 30 H 0.073 0.927 31 H -0.020 1.020 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.411 0.589 35 H 0.321 0.679 36 H 0.171 0.829 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.007 -18.686 -8.683 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.352 4.352 8 H 0.105 0.895 9 N -0.335 5.335 10 C 0.037 3.963 11 C -0.169 4.169 12 C 0.084 3.916 13 N -0.335 5.335 14 C 0.379 3.621 15 O -0.393 6.393 16 C -0.130 4.130 17 O -0.069 6.069 18 C 0.013 3.987 19 N -0.219 5.219 20 C -0.144 4.144 21 C 0.299 3.701 22 F -0.176 7.176 23 F -0.180 7.180 24 C -0.143 4.143 25 C -0.147 4.147 26 C -0.164 4.164 27 C 0.048 3.952 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.091 0.909 31 H -0.002 1.002 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.247 0.753 35 H 0.335 0.665 36 H 0.188 0.812 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.206 -19.070 -8.293 20.796 hybrid contribution 0.597 2.003 -0.133 2.095 sum 0.803 -17.066 -8.427 19.050 Atomic orbital electron populations 1.70065 1.06363 1.24699 1.59129 1.25583 0.96419 1.00897 1.03135 0.85027 0.78329 0.79694 0.76402 1.18724 1.22399 1.22314 1.19456 0.91059 0.83201 1.41498 0.89515 1.44722 1.01814 1.00554 1.86425 1.21623 0.84732 0.94109 0.95828 1.23158 0.97478 0.96222 1.00059 1.21589 0.95112 0.92775 0.82160 1.45718 1.35270 1.41147 1.11337 1.16545 0.80873 0.79799 0.84912 1.90942 1.50584 1.60960 1.36820 1.22963 0.99694 1.03557 0.86781 1.84592 1.51992 1.54504 1.15765 1.29807 0.86911 0.84668 0.97297 1.70201 1.21149 1.25599 1.04992 1.22553 0.99055 0.99055 0.93725 1.19730 0.85121 0.84195 0.81101 1.93030 1.79622 1.79289 1.65679 1.93043 1.75180 1.64797 1.85013 1.22236 0.97861 0.96899 0.97347 1.22339 0.95620 0.94746 1.01998 1.22821 1.00160 0.96193 0.97243 1.22060 0.92208 0.83854 0.97080 0.92334 0.94606 0.90907 1.00169 0.90994 0.92122 0.75267 0.66491 0.81247 0.91416 0.91522 0.90018 0.90060 0.91344 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.73 10.07 21.65 0.22 -56.52 16 2 C -0.07 -3.79 5.49 84.87 0.47 -3.32 16 3 Si 0.98 44.93 29.55 68.60 2.03 46.95 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 7 C -0.22 -11.91 10.01 84.04 0.84 -11.07 16 8 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.61 -29.93 3.03 -663.61 -2.01 -31.94 16 10 C 0.16 8.20 5.90 86.85 0.51 8.71 16 11 C -0.13 -5.41 5.75 31.88 0.18 -5.22 16 12 C 0.17 5.94 0.74 5.19 0.00 5.95 16 13 N -0.68 -21.65 5.24 -419.65 -2.20 -23.85 16 14 C 0.59 19.19 6.96 86.46 0.60 19.79 16 15 O -0.52 -19.11 11.80 -4.30 -0.05 -19.16 16 16 C -0.07 -1.94 7.18 24.05 0.17 -1.77 16 17 O -0.18 -3.67 10.57 -7.03 -0.07 -3.74 16 18 C 0.24 3.03 13.21 130.42 1.72 4.75 16 19 N -0.49 -9.49 11.26 -303.12 -3.41 -12.90 16 20 C -0.02 -0.48 6.60 41.83 0.28 -0.21 16 21 C 0.35 8.50 5.10 71.23 0.36 8.87 16 22 F -0.20 -5.47 16.20 44.97 0.73 -4.74 16 23 F -0.20 -6.03 16.20 44.97 0.73 -5.30 16 24 C -0.10 -3.17 5.23 31.27 0.16 -3.01 16 25 C -0.11 -2.86 6.85 31.67 0.22 -2.64 16 26 C -0.12 -4.17 6.20 31.82 0.20 -3.97 16 27 C 0.15 5.89 3.65 46.26 0.17 6.06 16 28 H 0.06 2.13 8.02 -2.39 -0.02 2.11 16 29 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.07 4.24 5.83 -2.39 -0.01 4.23 16 31 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 32 H 0.07 2.97 7.62 -2.39 -0.02 2.95 16 33 H 0.06 2.60 6.82 -2.39 -0.02 2.58 16 34 H 0.41 11.72 8.31 -92.70 -0.77 10.94 16 35 H 0.32 -0.40 8.06 -2.91 -0.02 -0.42 16 36 H 0.17 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.07 2.15 7.37 -2.39 -0.02 2.13 16 38 H 0.07 1.97 7.43 -2.39 -0.02 1.95 16 39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 42 H 0.05 1.99 8.09 -2.39 -0.02 1.97 16 Total: -1.00 -73.57 348.51 2.16 -71.41 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.31 Total: 16.86 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 5.89 Total: 22.92 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -7.40 Total: -125.21 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.13 Total: -22.90 kcal Atomic # 9 Polarization: -11.50 SS G_CDS: 1.46 Total: -10.04 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -73.57 2.16 -71.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992187302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.491 kcal (2) G-P(sol) polarization free energy of solvation -73.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds