Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99613 * 2 1 4 4 H 1.48498 * 109.47346 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47119 * 300.00115 * 3 2 1 6 6 H 1.48504 * 109.46909 * 60.00155 * 3 2 1 7 7 C 1.38805 * 120.00523 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99949 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.47371 * 125.58182 * 0.02579 * 9 7 2 11 11 C 1.54868 * 104.81867 * 155.28644 * 10 9 7 12 12 C 1.54914 * 101.76775 * 37.07543 * 11 10 9 13 13 N 1.46499 * 111.57669 * 85.82859 * 12 11 10 14 14 C 1.34771 * 120.00121 * 64.84267 * 13 12 11 15 15 O 1.21684 * 120.00433 * 0.02562 * 14 13 12 16 16 C 1.46725 * 119.99979 * 179.97438 * 14 13 12 17 17 O 1.35341 * 126.64406 * 359.69355 * 16 14 13 18 18 C 1.33666 * 107.68599 * 179.83499 * 17 16 14 19 19 N 1.30611 * 109.15208 * 0.43382 * 18 17 16 20 20 C 1.33693 * 108.99882 * 359.73247 * 19 18 17 21 21 C 1.50701 * 126.27452 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47134 * 30.04047 * 21 20 19 23 23 F 1.39904 * 109.46852 * 150.03861 * 21 20 19 24 24 C 1.53588 * 109.89846 * 211.55744 * 12 11 10 25 25 C 1.54219 * 106.67637 * 113.45492 * 24 12 11 26 26 C 1.57306 * 104.37031 * 334.98861 * 25 24 12 27 27 C 1.46984 * 125.57724 * 180.02562 * 9 7 2 28 28 H 1.09002 * 111.81294 * 59.08900 * 27 9 7 29 29 H 0.96996 * 120.00471 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.36799 * 274.12350 * 10 9 7 31 31 H 1.09000 * 110.36535 * 36.34574 * 10 9 7 32 32 H 1.08998 * 110.96864 * 155.19732 * 11 10 9 33 33 H 1.08997 * 110.96931 * 278.95327 * 11 10 9 34 34 H 0.96999 * 119.99600 * 244.84763 * 13 12 11 35 35 H 1.08003 * 125.42156 * 180.16509 * 18 17 16 36 36 H 1.08993 * 109.47277 * 270.03351 * 21 20 19 37 37 H 1.09009 * 110.01159 * 232.75577 * 24 12 11 38 38 H 1.08994 * 110.01767 * 354.09861 * 24 12 11 39 39 H 1.08997 * 110.49254 * 93.71946 * 25 24 12 40 40 H 1.08991 * 110.49362 * 216.24957 * 25 24 12 41 41 H 1.09002 * 110.79828 * 279.87935 * 26 25 24 42 42 H 1.08996 * 111.64872 * 155.95529 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 -0.1410 -2.5314 -0.0005 11 6 -0.4028 -3.9235 -0.6265 12 6 0.7725 -4.7539 -0.0530 13 7 0.4515 -5.3015 1.2673 14 6 -0.5356 -6.2097 1.3984 15 8 -1.1599 -6.5752 0.4200 16 6 -0.8567 -6.7585 2.7207 17 8 -0.2485 -6.4545 3.8909 18 6 -0.8415 -7.1670 4.8539 19 7 -1.7820 -7.9030 4.3250 20 6 -1.8217 -7.6779 3.0077 21 6 -2.7607 -8.3227 2.0209 22 9 -3.9667 -8.6323 2.6587 23 9 -3.0053 -7.4390 0.9642 24 6 1.1863 -5.8382 -1.0590 25 6 2.6053 -5.4757 -1.5418 26 6 2.7046 -3.9202 -1.3289 27 6 1.9336 -3.7262 -0.0005 28 1 2.5744 -3.8801 0.8677 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5257 -2.4952 1.0187 31 1 -0.5986 -1.7491 -0.6062 32 1 -1.3612 -4.3251 -0.2975 33 1 -0.3537 -3.8775 -1.7144 34 1 0.9494 -5.0103 2.0472 35 1 -0.5812 -7.1417 5.9018 36 1 -2.3095 -9.2361 1.6336 37 1 1.1954 -6.8140 -0.5730 38 1 0.4956 -5.8481 -1.9021 39 1 3.3557 -5.9907 -0.9421 40 1 2.7247 -5.7241 -2.5963 41 1 2.2120 -3.3861 -2.1414 42 1 3.7393 -3.5940 -1.2242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992187305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = -69.710664 kcal Electronic energy + Delta-G solvation = -31160.108179 eV Core-core repulsion = 26585.943423 eV Total energy + Delta-G solvation = -4574.164755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.95386 -46.94253 -43.83761 -40.25869 -38.17313 -35.60319 -34.30900 -33.52751 -31.68382 -31.28758 -29.81022 -27.32311 -26.80639 -25.93301 -24.08938 -23.89053 -22.40345 -21.30404 -20.10405 -20.06118 -18.97010 -18.52318 -17.83986 -17.26436 -17.10866 -17.03198 -16.85276 -15.90622 -15.79581 -15.02145 -14.74396 -14.68575 -14.41067 -14.02916 -13.70085 -13.56530 -13.39458 -13.19301 -12.92980 -12.80828 -12.24856 -11.97389 -11.91712 -11.77321 -11.51421 -11.25819 -11.16064 -11.03594 -10.88453 -10.74187 -10.62078 -10.30107 -10.15186 -10.03228 -9.94597 -9.74181 -9.58569 -9.49808 -8.75009 -8.68806 -6.90791 -5.69114 -3.12911 0.41569 1.94723 2.06595 2.95110 3.10287 3.15928 3.36063 3.41624 3.44234 3.79878 4.05475 4.37602 4.43691 4.70597 4.76208 4.94463 5.04086 5.06636 5.18986 5.23997 5.46654 5.57363 5.58381 5.74163 5.76334 5.86484 6.00425 6.04458 6.11055 6.27579 6.32754 6.45671 6.52570 6.69126 6.70968 6.85506 6.98782 7.04186 7.48112 7.51546 7.60143 7.82810 8.08821 8.32061 9.16567 9.77531 10.40864 11.33459 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.003395 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.578204 B = 8244.572076 C = 8750.799137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.151 3.849 11 C -0.142 4.142 12 C 0.159 3.841 13 N -0.686 5.686 14 C 0.593 3.407 15 O -0.486 6.486 16 C -0.047 4.047 17 O -0.180 6.180 18 C 0.203 3.797 19 N -0.469 5.469 20 C -0.021 4.021 21 C 0.356 3.644 22 F -0.192 7.192 23 F -0.160 7.160 24 C -0.109 4.109 25 C -0.126 4.126 26 C -0.127 4.127 27 C 0.161 3.839 28 H 0.045 0.955 29 H 0.252 0.748 30 H 0.009 0.991 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.404 0.596 35 H 0.263 0.737 36 H 0.129 0.871 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 -17.055 5.767 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.026 3.974 11 C -0.182 4.182 12 C 0.074 3.926 13 N -0.335 5.335 14 C 0.375 3.625 15 O -0.362 6.362 16 C -0.104 4.104 17 O -0.065 6.065 18 C -0.023 4.023 19 N -0.196 5.196 20 C -0.146 4.146 21 C 0.302 3.698 22 F -0.173 7.173 23 F -0.141 7.141 24 C -0.148 4.148 25 C -0.164 4.164 26 C -0.167 4.167 27 C 0.053 3.947 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.239 0.761 35 H 0.278 0.722 36 H 0.146 0.854 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.188 -17.394 5.399 18.214 hybrid contribution 1.025 1.513 0.583 1.919 sum 0.837 -15.881 5.982 16.991 Atomic orbital electron populations 1.69803 1.04893 1.24694 1.57385 1.24784 0.95664 0.97704 1.02321 0.86029 0.78638 0.83724 0.77262 1.20536 1.21728 1.21828 1.19072 0.90477 0.82237 1.43198 0.90412 1.44550 1.01783 0.99178 1.86519 1.21993 0.84395 0.92993 0.97975 1.23359 0.96468 0.98000 1.00331 1.21797 0.97263 0.92748 0.80816 1.45849 1.34854 1.41336 1.11476 1.16343 0.81418 0.80453 0.84244 1.91002 1.49829 1.59823 1.35508 1.23373 0.98261 1.02036 0.86749 1.84589 1.51388 1.54685 1.15859 1.28422 0.89350 0.88313 0.96189 1.70201 1.19548 1.23840 1.06055 1.22494 0.99528 0.99714 0.92830 1.19315 0.79688 0.91327 0.79509 1.93025 1.47929 1.93463 1.82878 1.93226 1.94390 1.70660 1.55830 1.22221 0.96909 0.97281 0.98388 1.22785 0.96069 0.97222 1.00314 1.23374 1.00349 0.93532 0.99454 1.21811 0.91422 0.85795 0.95700 0.93718 0.93736 0.97348 0.87252 0.91383 0.91009 0.76080 0.72195 0.85402 0.92200 0.90728 0.92313 0.92088 0.90556 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.20 10.07 55.49 0.56 -25.65 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.22 -5.83 9.99 -15.06 -0.15 -5.98 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.20 3.04 -161.10 -0.49 -14.69 16 10 C 0.15 3.60 5.91 -2.58 -0.02 3.59 16 11 C -0.14 -2.80 5.77 -24.74 -0.14 -2.95 16 12 C 0.16 2.72 0.73 -129.37 -0.09 2.62 16 13 N -0.69 -10.53 5.22 -46.63 -0.24 -10.77 16 14 C 0.59 9.06 6.88 -12.83 -0.09 8.97 16 15 O -0.49 -8.29 11.00 5.20 0.06 -8.23 16 16 C -0.05 -0.62 7.15 -36.84 -0.26 -0.89 16 17 O -0.18 -1.98 10.57 4.43 0.05 -1.94 16 18 C 0.20 1.73 13.21 52.24 0.69 2.42 16 19 N -0.47 -5.51 11.21 -10.88 -0.12 -5.63 16 20 C -0.02 -0.27 6.78 -82.46 -0.56 -0.83 16 21 C 0.36 4.41 5.63 36.01 0.20 4.61 16 22 F -0.19 -2.56 17.29 2.25 0.04 -2.52 16 23 F -0.16 -2.46 13.49 2.25 0.03 -2.43 16 24 C -0.11 -1.64 5.26 -25.79 -0.14 -1.78 16 25 C -0.13 -1.75 6.90 -23.75 -0.16 -1.91 16 26 C -0.13 -2.17 6.40 -23.43 -0.15 -2.32 16 27 C 0.16 3.06 3.58 -65.58 -0.23 2.82 16 28 H 0.05 0.84 7.99 -51.93 -0.42 0.42 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.11 2.97 5.82 -51.93 -0.30 2.67 16 32 H 0.07 1.36 6.78 -51.93 -0.35 1.01 16 33 H 0.07 1.40 7.68 -51.93 -0.40 1.00 16 34 H 0.40 5.72 8.30 -40.82 -0.34 5.38 16 35 H 0.26 0.70 8.06 -52.48 -0.42 0.27 16 36 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 0.87 7.43 -51.92 -0.39 0.48 16 38 H 0.07 1.15 7.43 -51.93 -0.39 0.77 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -31.91 346.86 -6.20 -38.11 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.08 Total: 4.02 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -1.20 Total: 8.04 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.30 Total: -56.74 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.10 Total: -10.17 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.07 Total: -4.95 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.91 -6.20 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992187305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.598 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds