Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99613 * 2 1 4 4 H 1.48498 * 109.47346 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47119 * 300.00115 * 3 2 1 6 6 H 1.48504 * 109.46909 * 60.00155 * 3 2 1 7 7 C 1.38805 * 120.00523 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99949 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.47371 * 125.58182 * 0.02579 * 9 7 2 11 11 C 1.54868 * 104.81867 * 155.28644 * 10 9 7 12 12 C 1.54914 * 101.76775 * 37.07543 * 11 10 9 13 13 N 1.46499 * 111.57669 * 85.82859 * 12 11 10 14 14 C 1.34771 * 120.00121 * 64.84267 * 13 12 11 15 15 O 1.21684 * 120.00433 * 0.02562 * 14 13 12 16 16 C 1.46725 * 119.99979 * 179.97438 * 14 13 12 17 17 O 1.35341 * 126.64406 * 359.69355 * 16 14 13 18 18 C 1.33666 * 107.68599 * 179.83499 * 17 16 14 19 19 N 1.30611 * 109.15208 * 0.43382 * 18 17 16 20 20 C 1.33693 * 108.99882 * 359.73247 * 19 18 17 21 21 C 1.50701 * 126.27452 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47134 * 30.04047 * 21 20 19 23 23 F 1.39904 * 109.46852 * 150.03861 * 21 20 19 24 24 C 1.53588 * 109.89846 * 211.55744 * 12 11 10 25 25 C 1.54219 * 106.67637 * 113.45492 * 24 12 11 26 26 C 1.57306 * 104.37031 * 334.98861 * 25 24 12 27 27 C 1.46984 * 125.57724 * 180.02562 * 9 7 2 28 28 H 1.09002 * 111.81294 * 59.08900 * 27 9 7 29 29 H 0.96996 * 120.00471 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.36799 * 274.12350 * 10 9 7 31 31 H 1.09000 * 110.36535 * 36.34574 * 10 9 7 32 32 H 1.08998 * 110.96864 * 155.19732 * 11 10 9 33 33 H 1.08997 * 110.96931 * 278.95327 * 11 10 9 34 34 H 0.96999 * 119.99600 * 244.84763 * 13 12 11 35 35 H 1.08003 * 125.42156 * 180.16509 * 18 17 16 36 36 H 1.08993 * 109.47277 * 270.03351 * 21 20 19 37 37 H 1.09009 * 110.01159 * 232.75577 * 24 12 11 38 38 H 1.08994 * 110.01767 * 354.09861 * 24 12 11 39 39 H 1.08997 * 110.49254 * 93.71946 * 25 24 12 40 40 H 1.08991 * 110.49362 * 216.24957 * 25 24 12 41 41 H 1.09002 * 110.79828 * 279.87935 * 26 25 24 42 42 H 1.08996 * 111.64872 * 155.95529 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 -0.1410 -2.5314 -0.0005 11 6 -0.4028 -3.9235 -0.6265 12 6 0.7725 -4.7539 -0.0530 13 7 0.4515 -5.3015 1.2673 14 6 -0.5356 -6.2097 1.3984 15 8 -1.1599 -6.5752 0.4200 16 6 -0.8567 -6.7585 2.7207 17 8 -0.2485 -6.4545 3.8909 18 6 -0.8415 -7.1670 4.8539 19 7 -1.7820 -7.9030 4.3250 20 6 -1.8217 -7.6779 3.0077 21 6 -2.7607 -8.3227 2.0209 22 9 -3.9667 -8.6323 2.6587 23 9 -3.0053 -7.4390 0.9642 24 6 1.1863 -5.8382 -1.0590 25 6 2.6053 -5.4757 -1.5418 26 6 2.7046 -3.9202 -1.3289 27 6 1.9336 -3.7262 -0.0005 28 1 2.5744 -3.8801 0.8677 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5257 -2.4952 1.0187 31 1 -0.5986 -1.7491 -0.6062 32 1 -1.3612 -4.3251 -0.2975 33 1 -0.3537 -3.8775 -1.7144 34 1 0.9494 -5.0103 2.0472 35 1 -0.5812 -7.1417 5.9018 36 1 -2.3095 -9.2361 1.6336 37 1 1.1954 -6.8140 -0.5730 38 1 0.4956 -5.8481 -1.9021 39 1 3.3557 -5.9907 -0.9421 40 1 2.7247 -5.7241 -2.5963 41 1 2.2120 -3.3861 -2.1414 42 1 3.7393 -3.5940 -1.2242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992187305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = -93.063572 kcal Electronic energy + Delta-G solvation = -31161.120837 eV Core-core repulsion = 26585.943423 eV Total energy + Delta-G solvation = -4575.177414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.97870 -47.99095 -44.69640 -41.61035 -39.53894 -36.51085 -35.99845 -34.78104 -33.34219 -32.46821 -31.38879 -28.45173 -28.41385 -27.23379 -25.75611 -24.98949 -23.41107 -22.54180 -21.68763 -21.33544 -20.28391 -19.64061 -18.91138 -18.78205 -18.30961 -18.06253 -17.77434 -17.30820 -16.85623 -16.63659 -16.09215 -15.96487 -15.59820 -15.33532 -15.04011 -14.81370 -14.73980 -14.50587 -14.29225 -13.98808 -13.85852 -13.51565 -13.21255 -12.94145 -12.88478 -12.82370 -12.65151 -12.42095 -12.31945 -12.08606 -11.97193 -11.91342 -11.71060 -11.62702 -11.50722 -11.27377 -11.11433 -10.73464 -10.45286 -10.05707 -8.86882 -7.74061 -5.19112 -0.52414 1.14376 1.17056 1.48055 1.48730 1.58619 1.82273 1.97857 2.33610 2.50732 2.95668 3.16888 3.29435 3.35826 3.53153 3.61937 3.80826 3.92528 3.95094 4.03078 4.07211 4.28595 4.34944 4.40605 4.46935 4.58598 4.62015 4.75299 4.84288 4.91532 4.94627 5.10009 5.16276 5.23080 5.33059 5.45874 5.52358 5.58485 5.65103 5.82541 6.13514 6.30967 6.37068 6.91089 7.11680 7.80170 8.43624 9.27469 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.003395 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.578204 B = 8244.572076 C = 8750.799137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.222 4.222 8 H 0.087 0.913 9 N -0.612 5.612 10 C 0.161 3.839 11 C -0.130 4.130 12 C 0.171 3.829 13 N -0.687 5.687 14 C 0.595 3.405 15 O -0.508 6.508 16 C -0.072 4.072 17 O -0.183 6.183 18 C 0.237 3.763 19 N -0.500 5.500 20 C -0.018 4.018 21 C 0.348 3.652 22 F -0.199 7.199 23 F -0.181 7.181 24 C -0.103 4.103 25 C -0.109 4.109 26 C -0.124 4.124 27 C 0.153 3.847 28 H 0.056 0.944 29 H 0.244 0.756 30 H -0.021 1.021 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.410 0.590 35 H 0.318 0.682 36 H 0.166 0.834 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.694 -19.051 6.855 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.225 1.225 7 C -0.351 4.351 8 H 0.105 0.895 9 N -0.336 5.336 10 C 0.036 3.964 11 C -0.169 4.169 12 C 0.085 3.915 13 N -0.336 5.336 14 C 0.379 3.621 15 O -0.385 6.385 16 C -0.129 4.129 17 O -0.068 6.068 18 C 0.012 3.988 19 N -0.227 5.227 20 C -0.143 4.143 21 C 0.294 3.706 22 F -0.181 7.181 23 F -0.162 7.162 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.164 4.164 27 C 0.046 3.954 28 H 0.073 0.927 29 H 0.053 0.947 30 H -0.003 1.003 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.246 0.754 35 H 0.332 0.668 36 H 0.183 0.817 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.860 -19.436 6.495 20.576 hybrid contribution 0.372 2.084 0.388 2.152 sum 2.232 -17.352 6.882 18.800 Atomic orbital electron populations 1.70066 1.06345 1.24652 1.59210 1.25575 0.96409 1.00884 1.03216 0.85041 0.78350 0.79766 0.76379 1.18703 1.22340 1.22461 1.19449 0.91051 0.83252 1.41367 0.89537 1.44740 1.01839 1.00615 1.86416 1.21635 0.84732 0.94282 0.95794 1.23150 0.97598 0.96118 1.00054 1.21605 0.94854 0.92928 0.82160 1.45757 1.35384 1.41529 1.10977 1.16481 0.80706 0.79912 0.84982 1.90986 1.50304 1.60531 1.36671 1.22831 0.99807 1.03472 0.86837 1.84598 1.51544 1.55124 1.15570 1.29762 0.86692 0.85019 0.97326 1.70259 1.21375 1.25626 1.05425 1.22619 0.98974 0.99101 0.93566 1.19800 0.79452 0.92286 0.79096 1.93002 1.48559 1.93477 1.83029 1.93179 1.94533 1.71596 1.56856 1.22174 0.97606 0.96870 0.97521 1.22723 0.95652 0.94318 1.02050 1.23239 0.99905 0.96112 0.97101 1.22084 0.92323 0.83830 0.97142 0.92658 0.94651 1.00284 0.90995 0.91992 0.91042 0.75427 0.66773 0.81743 0.90974 0.91212 0.89980 0.90127 0.93024 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.64 10.07 21.65 0.22 -56.42 16 2 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 3 Si 0.98 44.84 29.55 68.60 2.03 46.86 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.22 -11.79 9.99 84.03 0.84 -10.95 16 8 H 0.09 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.61 -29.65 3.04 -663.61 -2.02 -31.67 16 10 C 0.16 8.04 5.91 86.85 0.51 8.55 16 11 C -0.13 -5.26 5.77 31.89 0.18 -5.07 16 12 C 0.17 5.71 0.73 5.19 0.00 5.71 16 13 N -0.69 -20.57 5.22 -419.65 -2.19 -22.76 16 14 C 0.59 17.82 6.88 86.46 0.59 18.41 16 15 O -0.51 -17.16 11.00 -4.30 -0.05 -17.21 16 16 C -0.07 -1.84 7.15 24.05 0.17 -1.66 16 17 O -0.18 -3.60 10.57 -7.07 -0.07 -3.68 16 18 C 0.24 3.22 13.21 130.42 1.72 4.94 16 19 N -0.50 -10.56 11.21 -303.13 -3.40 -13.96 16 20 C -0.02 -0.45 6.78 41.83 0.28 -0.16 16 21 C 0.35 8.28 5.63 71.24 0.40 8.68 16 22 F -0.20 -5.19 17.29 44.97 0.78 -4.41 16 23 F -0.18 -5.55 13.49 44.97 0.61 -4.94 16 24 C -0.10 -2.88 5.26 31.20 0.16 -2.71 16 25 C -0.11 -2.69 6.90 32.52 0.22 -2.46 16 26 C -0.12 -4.03 6.40 32.73 0.21 -3.82 16 27 C 0.15 5.68 3.58 46.25 0.17 5.85 16 28 H 0.06 1.97 7.99 -2.39 -0.02 1.95 16 29 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 30 H -0.02 -1.14 8.14 -2.39 -0.02 -1.15 16 31 H 0.07 4.16 5.82 -2.39 -0.01 4.15 16 32 H 0.06 2.57 6.78 -2.39 -0.02 2.56 16 33 H 0.07 2.87 7.68 -2.39 -0.02 2.85 16 34 H 0.41 11.22 8.30 -92.71 -0.77 10.46 16 35 H 0.32 0.01 8.06 -2.91 -0.02 -0.01 16 36 H 0.17 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.07 1.88 7.43 -2.38 -0.02 1.87 16 38 H 0.07 2.04 7.43 -2.39 -0.02 2.02 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.05 1.94 8.10 -2.39 -0.02 1.92 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -72.58 346.86 2.16 -70.43 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.32 Total: 15.80 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 5.94 Total: 21.96 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -7.39 Total: -124.82 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.12 Total: -20.88 kcal Atomic # 9 Polarization: -10.74 SS G_CDS: 1.38 Total: -9.35 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -72.58 2.16 -70.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992187305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.638 kcal (2) G-P(sol) polarization free energy of solvation -72.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds