Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00024 * 2 1 4 4 H 1.48500 * 109.46832 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46764 * 299.99367 * 3 2 1 6 6 H 1.48491 * 109.47391 * 59.99660 * 3 2 1 7 7 C 1.38817 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99699 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.49294 * 127.10480 * 359.97438 * 9 7 2 11 11 C 1.56224 * 106.51289 * 188.65675 * 10 9 7 12 12 C 1.52144 * 100.80755 * 23.44766 * 11 10 9 13 13 N 1.46498 * 111.09698 * 73.97921 * 12 11 10 14 14 C 1.34777 * 119.99831 * 61.01643 * 13 12 11 15 15 O 1.21679 * 120.00266 * 359.97438 * 14 13 12 16 16 C 1.46728 * 119.99759 * 179.97438 * 14 13 12 17 17 O 1.35340 * 126.64345 * 0.02562 * 16 14 13 18 18 C 1.33668 * 107.68343 * 179.97438 * 17 16 14 19 19 N 1.30611 * 109.15305 * 0.24602 * 18 17 16 20 20 C 1.33698 * 108.99935 * 359.60037 * 19 18 17 21 21 C 1.50694 * 126.27792 * 180.15396 * 20 19 18 22 22 F 1.39901 * 109.46792 * 120.27902 * 21 20 19 23 23 F 1.39896 * 109.47444 * 240.27891 * 21 20 19 24 24 C 1.51239 * 122.08958 * 208.15941 * 12 11 10 25 25 C 1.56582 * 104.17674 * 141.04096 * 24 12 11 26 26 C 1.56285 * 106.07005 * 353.42752 * 25 24 12 27 27 C 1.42697 * 127.10316 * 179.97438 * 9 7 2 28 28 H 1.08999 * 108.16096 * 256.51228 * 27 9 7 29 29 H 0.97009 * 119.99925 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.04929 * 69.39163 * 10 9 7 31 31 H 1.09004 * 110.04769 * 307.92176 * 10 9 7 32 32 H 1.09002 * 111.14927 * 265.56278 * 11 10 9 33 33 H 1.08997 * 111.15011 * 141.33144 * 11 10 9 34 34 H 0.96998 * 119.99716 * 241.01421 * 13 12 11 35 35 H 1.08002 * 125.42019 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47103 * 0.28330 * 21 20 19 37 37 H 1.08997 * 110.40411 * 260.69436 * 24 12 11 38 38 H 1.08996 * 110.40480 * 23.12655 * 24 12 11 39 39 H 1.08997 * 110.45350 * 234.07501 * 25 24 12 40 40 H 1.09005 * 109.79547 * 112.42903 * 25 24 12 41 41 H 1.09001 * 110.97039 * 217.20110 * 26 25 24 42 42 H 1.09005 * 110.97129 * 93.43733 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1560 -2.5727 0.0005 11 6 -0.4136 -4.0970 0.2260 12 6 0.8804 -4.5063 0.9137 13 7 0.9155 -4.0290 2.2983 14 6 -0.0181 -4.4432 3.1777 15 8 -0.8905 -5.2131 2.8215 16 6 0.0174 -3.9656 4.5646 17 8 0.9204 -3.1130 5.1025 18 6 0.5973 -2.9369 6.3875 19 7 -0.4623 -3.6486 6.6643 20 6 -0.8533 -4.2944 5.5610 21 6 -2.0360 -5.2207 5.4418 22 9 -2.9229 -4.7232 4.4810 23 9 -1.5962 -6.4916 5.0567 24 6 1.4383 -5.9080 0.8072 25 6 2.9851 -5.6968 0.6859 26 6 3.2026 -4.1543 0.5604 27 6 1.8806 -3.7027 0.0005 28 1 1.7902 -4.1096 -1.0066 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5714 -2.2613 -0.9578 31 1 -0.6047 -1.9944 0.8083 32 1 -0.5371 -4.6195 -0.7226 33 1 -1.2729 -4.2586 0.8767 34 1 1.6107 -3.4150 2.5821 35 1 1.1304 -2.3097 7.0867 36 1 -2.5433 -5.2879 6.4042 37 1 1.1851 -6.4863 1.6957 38 1 1.0601 -6.4005 -0.0886 39 1 3.3705 -6.2037 -0.1988 40 1 3.4805 -6.0745 1.5804 41 1 4.0158 -3.9299 -0.1299 42 1 3.3867 -3.7056 1.5366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992187307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = -60.640623 kcal Electronic energy + Delta-G solvation = -31841.252460 eV Core-core repulsion = 27267.481011 eV Total energy + Delta-G solvation = -4573.771449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.84633 -46.85167 -43.68093 -40.54507 -38.18492 -35.46862 -34.49161 -33.16392 -31.88443 -31.16412 -29.88312 -27.18139 -27.01154 -25.81205 -24.20203 -23.88265 -22.37539 -21.00629 -20.53220 -19.73181 -18.90321 -18.53813 -17.43339 -17.37455 -17.19199 -16.65238 -16.54352 -15.85768 -15.67228 -14.85701 -14.74657 -14.55030 -14.32921 -14.00667 -13.93347 -13.72364 -13.46176 -13.18309 -12.73290 -12.65760 -12.38443 -12.04766 -11.79871 -11.49213 -11.46335 -11.43830 -11.08984 -11.06254 -11.00452 -10.89445 -10.62087 -10.32929 -10.16375 -10.05207 -9.88003 -9.76316 -9.39328 -9.29644 -8.72785 -8.64718 -6.92767 -5.80010 -3.15301 0.59322 2.06798 2.23463 3.15627 3.23247 3.32877 3.34632 3.38855 3.41482 4.01023 4.20831 4.38872 4.48943 4.55563 4.96827 5.02613 5.13108 5.15734 5.21105 5.29029 5.41977 5.53556 5.63511 5.70573 5.74113 5.86833 5.89519 6.07241 6.15257 6.22337 6.29663 6.34477 6.42094 6.59708 6.77026 6.81006 6.99510 7.14936 7.46781 7.55361 7.72375 7.75797 8.13584 8.31279 9.07198 9.73849 10.42401 11.32022 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011456 B = 0.004675 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.569625 B = 5988.265491 C = 6948.366695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.584 5.584 10 C 0.178 3.822 11 C -0.143 4.143 12 C 0.128 3.872 13 N -0.669 5.669 14 C 0.594 3.406 15 O -0.498 6.498 16 C -0.032 4.032 17 O -0.177 6.177 18 C 0.201 3.799 19 N -0.474 5.474 20 C -0.031 4.031 21 C 0.364 3.636 22 F -0.180 7.180 23 F -0.184 7.184 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.117 4.117 27 C 0.161 3.839 28 H 0.026 0.974 29 H 0.253 0.747 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.406 0.594 35 H 0.262 0.738 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 -10.102 10.954 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.307 5.307 10 C 0.054 3.946 11 C -0.182 4.182 12 C 0.041 3.959 13 N -0.318 5.318 14 C 0.376 3.624 15 O -0.375 6.375 16 C -0.090 4.090 17 O -0.061 6.061 18 C -0.025 4.025 19 N -0.201 5.201 20 C -0.155 4.155 21 C 0.310 3.690 22 F -0.161 7.161 23 F -0.165 7.165 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.155 4.155 27 C 0.051 3.949 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.242 0.758 35 H 0.277 0.723 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.279 -10.389 11.165 15.305 hybrid contribution 1.172 1.553 -0.398 1.986 sum 2.451 -8.836 10.768 14.143 Atomic orbital electron populations 1.69933 1.04919 1.25098 1.56348 1.24809 0.95617 0.97682 1.01956 0.86097 0.78745 0.83924 0.77280 1.20481 1.21711 1.21821 1.19042 0.90276 0.82209 1.44503 0.90230 1.43681 1.01745 0.99197 1.86072 1.22020 0.83104 0.88640 1.00834 1.22860 0.96530 0.99393 0.99395 1.21717 0.99651 0.94045 0.80506 1.45589 1.29408 1.46901 1.09925 1.16353 0.83192 0.81835 0.80990 1.90920 1.35669 1.34795 1.76101 1.23560 0.92151 0.96374 0.96886 1.84614 1.46123 1.49912 1.25477 1.28326 0.93581 0.98604 0.81967 1.70110 1.12380 1.09960 1.27683 1.22342 1.00381 1.03158 0.89633 1.19116 0.83351 0.75876 0.90688 1.93084 1.68253 1.87521 1.67277 1.93052 1.90400 1.40063 1.92988 1.22064 0.95040 0.95760 1.02252 1.22976 0.95556 0.95840 1.01153 1.21872 0.98035 0.94516 1.01106 1.20823 0.91361 0.87440 0.95302 0.95723 0.93680 0.94522 0.91818 0.91335 0.90315 0.75760 0.72268 0.85509 0.91395 0.90743 0.91678 0.92236 0.91491 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.18 10.55 55.49 0.59 -25.60 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 21.33 29.55 -169.99 -5.02 16.30 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.05 10.29 -15.06 -0.15 -6.21 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.58 -13.87 3.16 -162.70 -0.51 -14.38 16 10 C 0.18 4.24 5.33 -0.76 0.00 4.24 16 11 C -0.14 -2.83 6.10 -25.44 -0.16 -2.98 16 12 C 0.13 2.28 0.42 -130.70 -0.06 2.23 16 13 N -0.67 -11.82 4.48 -47.85 -0.21 -12.04 16 14 C 0.59 10.66 7.18 -12.83 -0.09 10.56 16 15 O -0.50 -9.77 12.04 5.21 0.06 -9.71 16 16 C -0.03 -0.51 7.18 -36.84 -0.26 -0.77 16 17 O -0.18 -2.42 10.57 4.42 0.05 -2.37 16 18 C 0.20 2.08 13.21 52.24 0.69 2.77 16 19 N -0.47 -6.06 11.26 -10.88 -0.12 -6.19 16 20 C -0.03 -0.45 6.60 -82.47 -0.54 -1.00 16 21 C 0.36 5.05 5.10 36.00 0.18 5.23 16 22 F -0.18 -2.96 16.20 2.25 0.04 -2.93 16 23 F -0.18 -2.81 16.20 2.25 0.04 -2.78 16 24 C -0.11 -1.69 6.24 -25.69 -0.16 -1.85 16 25 C -0.12 -1.56 6.95 -23.04 -0.16 -1.72 16 26 C -0.12 -1.85 6.46 -26.21 -0.17 -2.02 16 27 C 0.16 3.11 2.65 -68.73 -0.18 2.93 16 28 H 0.03 0.51 7.98 -51.93 -0.41 0.09 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.04 0.96 7.98 -51.93 -0.41 0.54 16 31 H 0.06 1.72 7.05 -51.93 -0.37 1.35 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.63 6.27 -51.93 -0.33 1.31 16 34 H 0.41 7.17 7.35 -40.82 -0.30 6.87 16 35 H 0.26 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.05 7.73 -51.93 -0.40 0.65 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.02 7.17 -51.93 -0.37 0.64 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -32.02 349.11 -6.11 -38.13 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.10 Total: 5.06 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -1.16 Total: 11.23 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.27 Total: -58.20 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.11 Total: -12.08 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.07 Total: -5.70 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.02 -6.11 -38.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992187307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.509 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds