Wall clock time and date at job start Sat Apr 11 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00024 * 2 1 4 4 H 1.48500 * 109.46832 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46764 * 299.99367 * 3 2 1 6 6 H 1.48491 * 109.47391 * 59.99660 * 3 2 1 7 7 C 1.38817 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99699 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.49294 * 127.10480 * 359.97438 * 9 7 2 11 11 C 1.56224 * 106.51289 * 188.65675 * 10 9 7 12 12 C 1.52144 * 100.80755 * 23.44766 * 11 10 9 13 13 N 1.46498 * 111.09698 * 73.97921 * 12 11 10 14 14 C 1.34777 * 119.99831 * 61.01643 * 13 12 11 15 15 O 1.21679 * 120.00266 * 359.97438 * 14 13 12 16 16 C 1.46728 * 119.99759 * 179.97438 * 14 13 12 17 17 O 1.35340 * 126.64345 * 0.02562 * 16 14 13 18 18 C 1.33668 * 107.68343 * 179.97438 * 17 16 14 19 19 N 1.30611 * 109.15305 * 0.24602 * 18 17 16 20 20 C 1.33698 * 108.99935 * 359.60037 * 19 18 17 21 21 C 1.50694 * 126.27792 * 180.15396 * 20 19 18 22 22 F 1.39901 * 109.46792 * 120.27902 * 21 20 19 23 23 F 1.39896 * 109.47444 * 240.27891 * 21 20 19 24 24 C 1.51239 * 122.08958 * 208.15941 * 12 11 10 25 25 C 1.56582 * 104.17674 * 141.04096 * 24 12 11 26 26 C 1.56285 * 106.07005 * 353.42752 * 25 24 12 27 27 C 1.42697 * 127.10316 * 179.97438 * 9 7 2 28 28 H 1.08999 * 108.16096 * 256.51228 * 27 9 7 29 29 H 0.97009 * 119.99925 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.04929 * 69.39163 * 10 9 7 31 31 H 1.09004 * 110.04769 * 307.92176 * 10 9 7 32 32 H 1.09002 * 111.14927 * 265.56278 * 11 10 9 33 33 H 1.08997 * 111.15011 * 141.33144 * 11 10 9 34 34 H 0.96998 * 119.99716 * 241.01421 * 13 12 11 35 35 H 1.08002 * 125.42019 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47103 * 0.28330 * 21 20 19 37 37 H 1.08997 * 110.40411 * 260.69436 * 24 12 11 38 38 H 1.08996 * 110.40480 * 23.12655 * 24 12 11 39 39 H 1.08997 * 110.45350 * 234.07501 * 25 24 12 40 40 H 1.09005 * 109.79547 * 112.42903 * 25 24 12 41 41 H 1.09001 * 110.97039 * 217.20110 * 26 25 24 42 42 H 1.09005 * 110.97129 * 93.43733 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1560 -2.5727 0.0005 11 6 -0.4136 -4.0970 0.2260 12 6 0.8804 -4.5063 0.9137 13 7 0.9155 -4.0290 2.2983 14 6 -0.0181 -4.4432 3.1777 15 8 -0.8905 -5.2131 2.8215 16 6 0.0174 -3.9656 4.5646 17 8 0.9204 -3.1130 5.1025 18 6 0.5973 -2.9369 6.3875 19 7 -0.4623 -3.6486 6.6643 20 6 -0.8533 -4.2944 5.5610 21 6 -2.0360 -5.2207 5.4418 22 9 -2.9229 -4.7232 4.4810 23 9 -1.5962 -6.4916 5.0567 24 6 1.4383 -5.9080 0.8072 25 6 2.9851 -5.6968 0.6859 26 6 3.2026 -4.1543 0.5604 27 6 1.8806 -3.7027 0.0005 28 1 1.7902 -4.1096 -1.0066 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5714 -2.2613 -0.9578 31 1 -0.6047 -1.9944 0.8083 32 1 -0.5371 -4.6195 -0.7226 33 1 -1.2729 -4.2586 0.8767 34 1 1.6107 -3.4150 2.5821 35 1 1.1304 -2.3097 7.0867 36 1 -2.5433 -5.2879 6.4042 37 1 1.1851 -6.4863 1.6957 38 1 1.0601 -6.4005 -0.0886 39 1 3.3705 -6.2037 -0.1988 40 1 3.4805 -6.0745 1.5804 41 1 4.0158 -3.9299 -0.1299 42 1 3.3867 -3.7056 1.5366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992187307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:00 Heat of formation + Delta-G solvation = -84.051924 kcal Electronic energy + Delta-G solvation = -31842.267651 eV Core-core repulsion = 27267.481011 eV Total energy + Delta-G solvation = -4574.786639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.00133 -48.02837 -44.70554 -42.00601 -39.61903 -36.52543 -36.17509 -34.52816 -33.66725 -32.40370 -31.46202 -28.59190 -28.34071 -27.24948 -25.97869 -25.03088 -23.50370 -22.37340 -21.95894 -21.28150 -20.31918 -19.75184 -18.54699 -18.54587 -18.36186 -18.26343 -17.76216 -17.44954 -16.67380 -16.48749 -16.19482 -15.95353 -15.71821 -15.64346 -15.13584 -15.02927 -14.85009 -14.37472 -14.18916 -14.08157 -13.88322 -13.64194 -13.07290 -13.01437 -12.87511 -12.82157 -12.67710 -12.52292 -12.26876 -12.16431 -12.12609 -12.02677 -11.81112 -11.60336 -11.42111 -11.36965 -10.86066 -10.74444 -10.50443 -10.04413 -8.89728 -7.85282 -5.21498 -0.52694 1.11797 1.18237 1.45681 1.47076 1.56742 1.83466 2.05073 2.29158 2.48790 3.04018 3.08505 3.14619 3.34376 3.46524 3.72465 3.84178 3.91199 3.91875 4.06797 4.07898 4.23955 4.26485 4.36063 4.40068 4.53376 4.59946 4.77154 4.89483 4.91548 4.92778 5.05495 5.09603 5.20294 5.25582 5.46999 5.52236 5.53952 5.60611 5.71097 6.10881 6.15951 6.39308 6.93920 7.02526 7.75129 8.47493 9.26693 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011456 B = 0.004675 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.569625 B = 5988.265491 C = 6948.366695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.299 1.299 6 H -0.296 1.296 7 C -0.229 4.229 8 H 0.091 0.909 9 N -0.597 5.597 10 C 0.191 3.809 11 C -0.132 4.132 12 C 0.136 3.864 13 N -0.671 5.671 14 C 0.592 3.408 15 O -0.524 6.524 16 C -0.071 4.071 17 O -0.185 6.185 18 C 0.232 3.768 19 N -0.490 5.490 20 C -0.024 4.024 21 C 0.355 3.645 22 F -0.200 7.200 23 F -0.194 7.194 24 C -0.108 4.108 25 C -0.102 4.102 26 C -0.112 4.112 27 C 0.149 3.851 28 H 0.023 0.977 29 H 0.244 0.756 30 H 0.001 0.999 31 H 0.024 0.976 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.405 0.595 35 H 0.319 0.681 36 H 0.172 0.828 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.537 -10.970 12.583 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.258 4.258 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.227 1.227 6 H -0.223 1.223 7 C -0.358 4.358 8 H 0.109 0.891 9 N -0.320 5.320 10 C 0.066 3.934 11 C -0.171 4.171 12 C 0.049 3.951 13 N -0.320 5.320 14 C 0.376 3.624 15 O -0.402 6.402 16 C -0.129 4.129 17 O -0.071 6.071 18 C 0.007 3.993 19 N -0.217 5.217 20 C -0.149 4.149 21 C 0.301 3.699 22 F -0.181 7.181 23 F -0.175 7.175 24 C -0.146 4.146 25 C -0.140 4.140 26 C -0.150 4.150 27 C 0.040 3.960 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.020 0.980 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.241 0.759 35 H 0.333 0.667 36 H 0.189 0.811 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.677 -11.299 12.803 17.467 hybrid contribution 0.442 1.854 -0.826 2.077 sum 4.119 -9.444 11.976 15.799 Atomic orbital electron populations 1.70163 1.06501 1.25037 1.58435 1.25604 0.96330 1.00959 1.02864 0.85077 0.78520 0.79819 0.76333 1.18447 1.22655 1.22286 1.19443 0.90912 0.83065 1.42364 0.89141 1.43792 1.01756 1.00506 1.85944 1.21658 0.83490 0.90860 0.97353 1.22696 0.97514 0.96540 1.00341 1.21696 0.97396 0.95688 0.80351 1.45584 1.29551 1.47012 1.09823 1.16553 0.82580 0.81393 0.81868 1.90888 1.36364 1.35957 1.77040 1.23151 0.94225 0.99024 0.96510 1.84610 1.45910 1.49713 1.26856 1.29762 0.92044 0.96366 0.81092 1.70178 1.13690 1.10992 1.26868 1.22578 0.99869 1.02499 0.89904 1.19709 0.83325 0.75176 0.91707 1.93041 1.68882 1.87789 1.68378 1.93022 1.90565 1.40723 1.93219 1.22072 0.96345 0.93483 1.02746 1.22910 0.94017 0.93813 1.03255 1.21890 0.96008 0.96255 1.00871 1.21059 0.94126 0.85167 0.95693 0.95922 0.94669 0.98032 0.95796 0.89693 0.91564 0.75861 0.66676 0.81147 0.91625 0.89546 0.89363 0.90321 0.90613 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.87 10.55 21.65 0.23 -56.64 16 2 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 3 Si 0.97 44.38 29.55 68.60 2.03 46.41 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.23 -12.01 10.29 84.03 0.86 -11.14 16 8 H 0.09 4.46 7.83 -2.91 -0.02 4.43 16 9 N -0.60 -28.87 3.16 -668.66 -2.11 -30.98 16 10 C 0.19 9.60 5.33 86.96 0.46 10.07 16 11 C -0.13 -5.38 6.10 31.43 0.19 -5.19 16 12 C 0.14 4.79 0.42 4.33 0.00 4.79 16 13 N -0.67 -23.81 4.48 -423.51 -1.90 -25.70 16 14 C 0.59 21.56 7.18 86.46 0.62 22.18 16 15 O -0.52 -21.03 12.04 -4.28 -0.05 -21.08 16 16 C -0.07 -2.27 7.18 24.05 0.17 -2.09 16 17 O -0.19 -4.79 10.57 -7.09 -0.07 -4.87 16 18 C 0.23 4.09 13.21 130.42 1.72 5.81 16 19 N -0.49 -11.40 11.26 -303.13 -3.41 -14.82 16 20 C -0.02 -0.69 6.60 41.83 0.28 -0.42 16 21 C 0.35 9.60 5.10 71.23 0.36 9.97 16 22 F -0.20 -6.67 16.20 44.97 0.73 -5.95 16 23 F -0.19 -5.89 16.20 44.97 0.73 -5.16 16 24 C -0.11 -3.01 6.24 31.27 0.20 -2.82 16 25 C -0.10 -2.36 6.95 32.99 0.23 -2.13 16 26 C -0.11 -3.28 6.46 30.93 0.20 -3.08 16 27 C 0.15 5.63 2.65 46.47 0.12 5.75 16 28 H 0.02 0.90 7.98 -2.39 -0.02 0.89 16 29 H 0.24 14.34 8.31 -92.70 -0.77 13.57 16 30 H 0.00 0.08 7.98 -2.39 -0.02 0.06 16 31 H 0.02 1.37 7.05 -2.38 -0.02 1.36 16 32 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.07 2.87 6.27 -2.39 -0.01 2.86 16 34 H 0.41 14.33 7.35 -92.71 -0.68 13.65 16 35 H 0.32 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.17 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.07 1.91 7.73 -2.39 -0.02 1.89 16 38 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.06 1.85 7.17 -2.38 -0.02 1.84 16 Total: -1.00 -73.67 349.11 2.46 -71.21 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.40 Total: 18.97 kcal Atomic # 6 Polarization: 22.72 SS G_CDS: 5.89 Total: 28.61 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -7.19 Total: -128.14 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.13 Total: -25.95 kcal Atomic # 9 Polarization: -12.56 SS G_CDS: 1.46 Total: -11.10 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -73.67 2.46 -71.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992187307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.841 kcal (2) G-P(sol) polarization free energy of solvation -73.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds