Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00042 * 2 1 4 4 H 1.48495 * 109.47324 * 265.30121 * 3 2 1 5 5 H 1.48507 * 109.47166 * 25.29877 * 3 2 1 6 6 H 1.48495 * 109.47082 * 145.29526 * 3 2 1 7 7 C 1.38806 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00322 * 333.08170 * 7 2 1 9 9 N 1.36940 * 120.00390 * 153.07965 * 7 2 1 10 10 C 1.49297 * 127.09831 * 350.02685 * 9 7 2 11 11 C 1.56316 * 106.46289 * 171.24177 * 10 9 7 12 12 C 1.52139 * 100.90669 * 336.89031 * 11 10 9 13 13 N 1.46493 * 111.49533 * 285.68491 * 12 11 10 14 14 C 1.34774 * 120.00392 * 288.52649 * 13 12 11 15 15 O 1.21692 * 119.99709 * 0.02562 * 14 13 12 16 16 C 1.46725 * 120.00370 * 180.02562 * 14 13 12 17 17 O 1.35341 * 126.64039 * 0.02562 * 16 14 13 18 18 C 1.33668 * 107.68210 * 180.02562 * 17 16 14 19 19 N 1.30617 * 109.15466 * 0.02562 * 18 17 16 20 20 C 1.33691 * 108.99244 * 359.72466 * 19 18 17 21 21 C 1.50705 * 126.27204 * 180.27325 * 20 19 18 22 22 F 1.39899 * 109.47147 * 30.19211 * 21 20 19 23 23 F 1.39897 * 109.47299 * 150.19013 * 21 20 19 24 24 C 1.51364 * 121.49514 * 150.70252 * 12 11 10 25 25 C 1.55692 * 104.22882 * 218.08598 * 24 12 11 26 26 C 1.56283 * 105.93351 * 7.82992 * 25 24 12 27 27 C 1.42697 * 127.10869 * 170.33831 * 9 7 2 28 28 H 1.09005 * 108.16357 * 103.45052 * 27 9 7 29 29 H 0.96995 * 119.99997 * 185.04656 * 1 2 3 30 30 H 1.08996 * 110.05171 * 290.62672 * 10 9 7 31 31 H 1.09001 * 110.04910 * 52.09876 * 10 9 7 32 32 H 1.09005 * 111.28007 * 218.89934 * 11 10 9 33 33 H 1.08999 * 110.96926 * 94.75810 * 11 10 9 34 34 H 0.97002 * 119.99937 * 108.53033 * 13 12 11 35 35 H 1.07998 * 125.42069 * 180.02562 * 18 17 16 36 36 H 1.09005 * 109.46807 * 270.19146 * 21 20 19 37 37 H 1.09000 * 110.09829 * 99.67266 * 24 12 11 38 38 H 1.09000 * 111.18657 * 337.03897 * 24 12 11 39 39 H 1.08997 * 110.15919 * 248.71301 * 25 24 12 40 40 H 1.09002 * 110.22171 * 126.97738 * 25 24 12 41 41 H 1.08999 * 110.97109 * 266.14036 * 26 25 24 42 42 H 1.09005 * 110.97133 * 142.37800 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5971 1.9891 -1.3953 5 1 1.4015 2.6794 0.5983 6 1 3.4945 1.4709 0.7971 7 6 2.0103 -1.2021 -0.0005 8 1 1.5581 -2.0869 0.4225 9 7 3.2684 -1.2662 -0.5375 10 6 3.9599 -0.2138 -1.3395 11 6 5.4390 -0.6890 -1.5124 12 6 5.5795 -1.6304 -0.3255 13 7 5.6889 -0.8923 0.9351 14 6 6.8142 -0.2073 1.2195 15 8 7.7392 -0.2016 0.4288 16 6 6.9240 0.5315 2.4824 17 8 5.9845 0.6162 3.4529 18 6 6.4788 1.3820 4.4307 19 7 7.6815 1.7723 4.1030 20 6 7.9939 1.2619 2.9075 21 6 9.2898 1.4604 2.1644 22 9 10.3316 1.6340 3.0818 23 9 9.5493 0.3376 1.3712 24 6 6.5206 -2.8153 -0.3632 25 6 5.7511 -3.9392 0.3910 26 6 4.3137 -3.3801 0.6434 27 6 4.1868 -2.3549 -0.4512 28 1 4.1844 -2.8781 -1.4075 29 1 -0.4850 -0.8367 0.0739 30 1 3.4816 -0.1117 -2.3136 31 1 3.9342 0.7378 -0.8086 32 1 6.1346 0.1468 -1.4358 33 1 5.5701 -1.2214 -2.4544 34 1 4.9515 -0.8966 1.5652 35 1 5.9654 1.6374 5.3459 36 1 9.2133 2.3436 1.5301 37 1 7.4475 -2.5742 0.1572 38 1 6.7295 -3.1200 -1.3887 39 1 6.2409 -4.1583 1.3398 40 1 5.7018 -4.8390 -0.2223 41 1 4.2438 -2.9128 1.6256 42 1 3.5649 -4.1644 0.5321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992187308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = -51.852549 kcal Electronic energy + Delta-G solvation = -31915.430906 eV Core-core repulsion = 27342.040536 eV Total energy + Delta-G solvation = -4573.390370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.96388 -46.95196 -43.76413 -40.80678 -38.41041 -35.52213 -34.78769 -33.35852 -32.24891 -31.38748 -30.15170 -27.32531 -27.20623 -26.27181 -24.19909 -23.55440 -22.42914 -21.40522 -20.97229 -19.63055 -19.09063 -18.71626 -17.82107 -17.36284 -17.22858 -17.05993 -16.80843 -15.99742 -15.76304 -15.24987 -15.03244 -14.87197 -14.60514 -14.20670 -14.09452 -13.71538 -13.63212 -13.26467 -13.21594 -12.90489 -12.65455 -12.27541 -12.00191 -11.92741 -11.66131 -11.47103 -11.17813 -11.13170 -11.11881 -10.99921 -10.82458 -10.52985 -10.37781 -10.14420 -9.73688 -9.57034 -9.45172 -9.25950 -8.86073 -8.52451 -7.25391 -6.44051 -3.30762 0.48169 2.00864 2.15848 2.99135 3.15758 3.20042 3.32099 3.36778 3.56420 3.83696 4.08125 4.23646 4.45541 4.47441 4.73641 4.89304 4.97989 4.99968 5.09562 5.12704 5.24944 5.32159 5.40719 5.49344 5.55646 5.65222 5.70496 5.79045 5.97698 6.02074 6.08490 6.18367 6.24987 6.29062 6.37951 6.43173 6.63703 6.76014 6.79376 7.08644 7.57889 7.58871 8.12944 8.20565 8.89309 9.51363 10.16096 11.03966 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.004943 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.905242 B = 5663.655569 C = 6751.181500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.014 4.014 3 Si 1.065 2.935 4 H -0.294 1.294 5 H -0.300 1.300 6 H -0.295 1.295 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.591 5.591 10 C 0.116 3.884 11 C -0.122 4.122 12 C 0.123 3.877 13 N -0.674 5.674 14 C 0.592 3.408 15 O -0.497 6.497 16 C -0.047 4.047 17 O -0.176 6.176 18 C 0.204 3.796 19 N -0.470 5.470 20 C -0.022 4.022 21 C 0.357 3.643 22 F -0.192 7.192 23 F -0.162 7.162 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.114 4.114 27 C 0.163 3.837 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.410 0.590 35 H 0.263 0.737 36 H 0.130 0.870 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.181 -0.770 5.163 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.216 4.216 3 Si 0.900 3.100 4 H -0.222 1.222 5 H -0.228 1.228 6 H -0.223 1.223 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.316 5.316 10 C -0.007 4.007 11 C -0.161 4.161 12 C 0.036 3.964 13 N -0.324 5.324 14 C 0.375 3.625 15 O -0.373 6.373 16 C -0.105 4.105 17 O -0.061 6.061 18 C -0.021 4.021 19 N -0.198 5.198 20 C -0.147 4.147 21 C 0.303 3.697 22 F -0.173 7.173 23 F -0.143 7.143 24 C -0.150 4.150 25 C -0.156 4.156 26 C -0.153 4.153 27 C 0.052 3.948 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.247 0.753 35 H 0.278 0.722 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.813 1.188 4.936 16.608 hybrid contribution -0.692 -1.907 0.381 2.064 sum 15.121 -0.719 5.317 16.045 Atomic orbital electron populations 1.70911 1.05880 1.30172 1.48477 1.25679 0.96282 1.00635 0.98963 0.83716 0.73607 0.76385 0.76289 1.22198 1.22798 1.22319 1.19973 0.88915 0.97151 1.39930 0.90271 1.44035 1.13644 1.13661 1.60225 1.22557 0.90372 0.92319 0.95478 1.22523 0.96882 0.99641 0.97041 1.21705 1.00094 0.91608 0.83000 1.45678 1.16445 1.48770 1.21551 1.16391 0.84014 0.79336 0.82739 1.90968 1.37799 1.62263 1.46305 1.23339 0.89094 1.05270 0.92799 1.84631 1.41325 1.54980 1.25163 1.28447 0.89778 0.89889 0.94007 1.70201 1.13932 1.23625 1.11995 1.22454 0.97775 1.00272 0.94224 1.19303 0.78927 0.89100 0.82413 1.93019 1.59782 1.95808 1.68731 1.93198 1.93942 1.54064 1.73105 1.21904 0.98099 0.93603 1.01361 1.22844 0.94936 0.97902 0.99926 1.21848 0.95933 0.98298 0.99208 1.20937 0.86527 0.90211 0.97085 0.94893 0.92501 0.93590 0.94669 0.90612 0.90001 0.75307 0.72159 0.85341 0.90875 0.90431 0.92089 0.91621 0.91630 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.40 13.70 55.49 0.76 -26.64 16 2 C -0.01 -0.39 5.45 -17.43 -0.09 -0.48 16 3 Si 1.07 25.85 24.77 -169.99 -4.21 21.64 16 4 H -0.29 -6.89 6.86 56.52 0.39 -6.51 16 5 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.29 -6.72 6.83 56.52 0.39 -6.34 16 7 C -0.33 -8.78 10.45 -15.06 -0.16 -8.94 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 9 N -0.59 -13.23 3.01 -162.64 -0.49 -13.72 16 10 C 0.12 2.42 5.24 -0.71 0.00 2.42 16 11 C -0.12 -2.07 6.19 -25.39 -0.16 -2.23 16 12 C 0.12 2.02 0.38 -130.64 -0.05 1.97 16 13 N -0.67 -11.20 4.41 -47.79 -0.21 -11.41 16 14 C 0.59 9.62 7.08 -12.83 -0.09 9.53 16 15 O -0.50 -8.51 11.29 5.20 0.06 -8.45 16 16 C -0.05 -0.70 7.14 -36.84 -0.26 -0.97 16 17 O -0.18 -2.35 10.57 4.42 0.05 -2.31 16 18 C 0.20 2.10 13.21 52.25 0.69 2.79 16 19 N -0.47 -6.08 11.22 -10.88 -0.12 -6.20 16 20 C -0.02 -0.31 6.78 -82.47 -0.56 -0.87 16 21 C 0.36 4.59 5.62 36.01 0.20 4.79 16 22 F -0.19 -2.58 17.29 2.25 0.04 -2.54 16 23 F -0.16 -2.43 13.49 2.25 0.03 -2.40 16 24 C -0.11 -1.55 6.06 -26.12 -0.16 -1.71 16 25 C -0.12 -1.52 6.93 -23.53 -0.16 -1.69 16 26 C -0.11 -1.80 6.45 -26.21 -0.17 -1.97 16 27 C 0.16 2.97 2.64 -68.73 -0.18 2.79 16 28 H 0.03 0.62 7.96 -51.93 -0.41 0.21 16 29 H 0.26 7.84 8.73 -40.82 -0.36 7.48 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.79 3.22 -51.93 -0.17 0.62 16 32 H 0.08 1.28 7.19 -51.93 -0.37 0.91 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.41 7.13 7.54 -40.82 -0.31 6.83 16 35 H 0.26 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.08 6.84 -51.93 -0.36 0.72 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.06 7.28 -51.93 -0.38 0.68 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -32.23 342.04 -5.08 -37.31 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -4.98 Total: 4.13 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -1.15 Total: 5.44 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.06 Total: -57.97 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.11 Total: -10.75 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.07 Total: -4.94 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -4.21 Total: 21.64 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.23 -5.08 -37.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992187308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.542 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds