Wall clock time and date at job start Sat Apr 11 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00042 * 2 1 4 4 H 1.48495 * 109.47324 * 265.30121 * 3 2 1 5 5 H 1.48507 * 109.47166 * 25.29877 * 3 2 1 6 6 H 1.48495 * 109.47082 * 145.29526 * 3 2 1 7 7 C 1.38806 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00322 * 333.08170 * 7 2 1 9 9 N 1.36940 * 120.00390 * 153.07965 * 7 2 1 10 10 C 1.49297 * 127.09831 * 350.02685 * 9 7 2 11 11 C 1.56316 * 106.46289 * 171.24177 * 10 9 7 12 12 C 1.52139 * 100.90669 * 336.89031 * 11 10 9 13 13 N 1.46493 * 111.49533 * 285.68491 * 12 11 10 14 14 C 1.34774 * 120.00392 * 288.52649 * 13 12 11 15 15 O 1.21692 * 119.99709 * 0.02562 * 14 13 12 16 16 C 1.46725 * 120.00370 * 180.02562 * 14 13 12 17 17 O 1.35341 * 126.64039 * 0.02562 * 16 14 13 18 18 C 1.33668 * 107.68210 * 180.02562 * 17 16 14 19 19 N 1.30617 * 109.15466 * 0.02562 * 18 17 16 20 20 C 1.33691 * 108.99244 * 359.72466 * 19 18 17 21 21 C 1.50705 * 126.27204 * 180.27325 * 20 19 18 22 22 F 1.39899 * 109.47147 * 30.19211 * 21 20 19 23 23 F 1.39897 * 109.47299 * 150.19013 * 21 20 19 24 24 C 1.51364 * 121.49514 * 150.70252 * 12 11 10 25 25 C 1.55692 * 104.22882 * 218.08598 * 24 12 11 26 26 C 1.56283 * 105.93351 * 7.82992 * 25 24 12 27 27 C 1.42697 * 127.10869 * 170.33831 * 9 7 2 28 28 H 1.09005 * 108.16357 * 103.45052 * 27 9 7 29 29 H 0.96995 * 119.99997 * 185.04656 * 1 2 3 30 30 H 1.08996 * 110.05171 * 290.62672 * 10 9 7 31 31 H 1.09001 * 110.04910 * 52.09876 * 10 9 7 32 32 H 1.09005 * 111.28007 * 218.89934 * 11 10 9 33 33 H 1.08999 * 110.96926 * 94.75810 * 11 10 9 34 34 H 0.97002 * 119.99937 * 108.53033 * 13 12 11 35 35 H 1.07998 * 125.42069 * 180.02562 * 18 17 16 36 36 H 1.09005 * 109.46807 * 270.19146 * 21 20 19 37 37 H 1.09000 * 110.09829 * 99.67266 * 24 12 11 38 38 H 1.09000 * 111.18657 * 337.03897 * 24 12 11 39 39 H 1.08997 * 110.15919 * 248.71301 * 25 24 12 40 40 H 1.09002 * 110.22171 * 126.97738 * 25 24 12 41 41 H 1.08999 * 110.97109 * 266.14036 * 26 25 24 42 42 H 1.09005 * 110.97133 * 142.37800 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5971 1.9891 -1.3953 5 1 1.4015 2.6794 0.5983 6 1 3.4945 1.4709 0.7971 7 6 2.0103 -1.2021 -0.0005 8 1 1.5581 -2.0869 0.4225 9 7 3.2684 -1.2662 -0.5375 10 6 3.9599 -0.2138 -1.3395 11 6 5.4390 -0.6890 -1.5124 12 6 5.5795 -1.6304 -0.3255 13 7 5.6889 -0.8923 0.9351 14 6 6.8142 -0.2073 1.2195 15 8 7.7392 -0.2016 0.4288 16 6 6.9240 0.5315 2.4824 17 8 5.9845 0.6162 3.4529 18 6 6.4788 1.3820 4.4307 19 7 7.6815 1.7723 4.1030 20 6 7.9939 1.2619 2.9075 21 6 9.2898 1.4604 2.1644 22 9 10.3316 1.6340 3.0818 23 9 9.5493 0.3376 1.3712 24 6 6.5206 -2.8153 -0.3632 25 6 5.7511 -3.9392 0.3910 26 6 4.3137 -3.3801 0.6434 27 6 4.1868 -2.3549 -0.4512 28 1 4.1844 -2.8781 -1.4075 29 1 -0.4850 -0.8367 0.0739 30 1 3.4816 -0.1117 -2.3136 31 1 3.9342 0.7378 -0.8086 32 1 6.1346 0.1468 -1.4358 33 1 5.5701 -1.2214 -2.4544 34 1 4.9515 -0.8966 1.5652 35 1 5.9654 1.6374 5.3459 36 1 9.2133 2.3436 1.5301 37 1 7.4475 -2.5742 0.1572 38 1 6.7295 -3.1200 -1.3887 39 1 6.2409 -4.1583 1.3398 40 1 5.7018 -4.8390 -0.2223 41 1 4.2438 -2.9128 1.6256 42 1 3.5649 -4.1644 0.5321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992187308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:03 Heat of formation + Delta-G solvation = -76.313522 kcal Electronic energy + Delta-G solvation = -31916.491613 eV Core-core repulsion = 27342.040536 eV Total energy + Delta-G solvation = -4574.451077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.99233 -47.99543 -44.72809 -42.13845 -39.70048 -36.55226 -36.33384 -34.63193 -34.08052 -32.52450 -31.60388 -28.75706 -28.35320 -27.54850 -25.48733 -25.06634 -23.49633 -22.78023 -22.10376 -21.12716 -20.37180 -19.86287 -19.15111 -18.80827 -18.37289 -18.08054 -17.80651 -17.40941 -16.90653 -16.65890 -16.44019 -16.15523 -15.82960 -15.52727 -15.30894 -15.16511 -14.87734 -14.71781 -14.32980 -14.17741 -13.92293 -13.76928 -13.50867 -13.10466 -12.92041 -12.78707 -12.57995 -12.52533 -12.43765 -12.19188 -12.08696 -12.02065 -11.70723 -11.56313 -11.36053 -11.09586 -10.94513 -10.56054 -10.48158 -10.10890 -9.17870 -8.61288 -5.40406 -0.54383 1.10184 1.19677 1.35505 1.42669 1.63030 1.81412 2.00207 2.30137 2.47723 2.79613 2.92752 3.13519 3.14543 3.36072 3.51483 3.72295 3.78914 3.96741 3.99690 4.04230 4.10172 4.17567 4.27288 4.29125 4.34171 4.53776 4.67568 4.75886 4.78789 4.84854 4.87654 4.93549 5.04173 5.11274 5.15847 5.29235 5.40113 5.55432 5.66601 6.08850 6.11014 6.35047 6.78609 6.89121 7.52314 8.18242 8.87768 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.004943 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.905242 B = 5663.655569 C = 6751.181500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 1.104 2.896 4 H -0.284 1.284 5 H -0.310 1.310 6 H -0.275 1.275 7 C -0.306 4.306 8 H 0.054 0.946 9 N -0.606 5.606 10 C 0.110 3.890 11 C -0.112 4.112 12 C 0.133 3.867 13 N -0.681 5.681 14 C 0.595 3.405 15 O -0.509 6.509 16 C -0.078 4.078 17 O -0.188 6.188 18 C 0.232 3.768 19 N -0.496 5.496 20 C -0.018 4.018 21 C 0.352 3.648 22 F -0.197 7.197 23 F -0.176 7.176 24 C -0.105 4.105 25 C -0.104 4.104 26 C -0.113 4.113 27 C 0.146 3.854 28 H 0.038 0.962 29 H 0.251 0.749 30 H 0.037 0.963 31 H 0.025 0.975 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.404 0.596 35 H 0.315 0.685 36 H 0.161 0.839 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.561 -0.789 5.626 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.263 4.263 3 Si 0.935 3.065 4 H -0.211 1.211 5 H -0.239 1.239 6 H -0.202 1.202 7 C -0.434 4.434 8 H 0.072 0.928 9 N -0.331 5.331 10 C -0.014 4.014 11 C -0.150 4.150 12 C 0.046 3.954 13 N -0.331 5.331 14 C 0.379 3.621 15 O -0.387 6.387 16 C -0.135 4.135 17 O -0.074 6.074 18 C 0.008 3.992 19 N -0.223 5.223 20 C -0.142 4.142 21 C 0.298 3.702 22 F -0.178 7.178 23 F -0.157 7.157 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.152 4.152 27 C 0.037 3.963 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.240 0.760 35 H 0.329 0.671 36 H 0.178 0.822 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.266 1.139 5.389 19.078 hybrid contribution -1.425 -1.963 0.324 2.447 sum 16.841 -0.824 5.714 17.803 Atomic orbital electron populations 1.71013 1.07092 1.29383 1.52424 1.26639 0.96233 1.03607 0.99856 0.83191 0.73103 0.73188 0.76996 1.21136 1.23941 1.20218 1.19838 0.90411 0.95797 1.37395 0.92811 1.44004 1.13316 1.15445 1.60315 1.22648 0.92723 0.91624 0.94390 1.22503 0.93879 1.00136 0.98527 1.21713 0.99014 0.91851 0.82829 1.45729 1.16531 1.49334 1.21480 1.16471 0.83495 0.79013 0.83161 1.90951 1.37976 1.62737 1.47010 1.23029 0.90080 1.07046 0.93329 1.84636 1.41413 1.55782 1.25563 1.29731 0.88846 0.86719 0.93948 1.70261 1.15354 1.24873 1.11841 1.22667 0.97762 0.99348 0.94446 1.19683 0.78378 0.89632 0.82535 1.93005 1.59982 1.95801 1.69024 1.93163 1.94009 1.55036 1.73472 1.21907 0.97225 0.92548 1.02639 1.22775 0.92475 0.98097 1.00892 1.21863 0.97994 0.97494 0.97846 1.21145 0.86836 0.90138 0.98170 0.94419 0.93933 0.94511 0.95777 0.90258 0.87660 0.75989 0.67088 0.82234 0.91298 0.88555 0.90937 0.89472 0.92552 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.14 13.70 21.65 0.30 -58.85 16 2 C -0.07 -3.87 5.45 84.86 0.46 -3.41 16 3 Si 1.10 52.82 24.77 68.60 1.70 54.52 16 4 H -0.28 -12.96 6.86 99.48 0.68 -12.27 16 5 H -0.31 -15.26 7.11 99.48 0.71 -14.55 16 6 H -0.28 -12.07 6.83 99.48 0.68 -11.39 16 7 C -0.31 -16.43 10.45 84.03 0.88 -15.55 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 9 N -0.61 -26.88 3.01 -668.46 -2.01 -28.89 16 10 C 0.11 4.44 5.24 86.99 0.46 4.89 16 11 C -0.11 -3.54 6.19 31.46 0.19 -3.34 16 12 C 0.13 4.06 0.38 4.37 0.00 4.07 16 13 N -0.68 -21.58 4.41 -423.34 -1.87 -23.45 16 14 C 0.59 18.36 7.08 86.46 0.61 18.98 16 15 O -0.51 -16.53 11.29 -4.32 -0.05 -16.57 16 16 C -0.08 -2.18 7.14 24.05 0.17 -2.01 16 17 O -0.19 -4.64 10.57 -7.09 -0.07 -4.71 16 18 C 0.23 4.05 13.21 130.42 1.72 5.78 16 19 N -0.50 -11.61 11.22 -303.12 -3.40 -15.01 16 20 C -0.02 -0.46 6.78 41.83 0.28 -0.18 16 21 C 0.35 8.41 5.62 71.24 0.40 8.81 16 22 F -0.20 -4.98 17.29 44.97 0.78 -4.20 16 23 F -0.18 -5.02 13.49 44.97 0.61 -4.41 16 24 C -0.10 -2.60 6.06 30.99 0.19 -2.41 16 25 C -0.10 -2.38 6.93 32.66 0.23 -2.15 16 26 C -0.11 -3.41 6.45 30.93 0.20 -3.21 16 27 C 0.15 5.13 2.64 46.47 0.12 5.26 16 28 H 0.04 1.33 7.96 -2.38 -0.02 1.31 16 29 H 0.25 15.58 8.73 -92.71 -0.81 14.77 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.02 1.05 3.22 -2.39 -0.01 1.04 16 32 H 0.08 2.49 7.19 -2.38 -0.02 2.47 16 33 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.40 13.70 7.54 -92.71 -0.70 13.00 16 35 H 0.31 1.37 8.06 -2.91 -0.02 1.34 16 36 H 0.16 2.77 8.14 -2.38 -0.02 2.75 16 37 H 0.07 1.83 6.84 -2.39 -0.02 1.81 16 38 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 1.78 7.28 -2.39 -0.02 1.77 16 42 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -71.68 342.04 2.20 -69.49 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.30 Total: 16.55 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 5.92 Total: 15.53 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -6.98 Total: -126.19 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.12 Total: -21.28 kcal Atomic # 9 Polarization: -10.00 SS G_CDS: 1.38 Total: -8.61 kcal Atomic # 14 Polarization: 52.82 SS G_CDS: 1.70 Total: 54.52 kcal Total: -71.68 2.20 -69.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992187308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.827 kcal (2) G-P(sol) polarization free energy of solvation -71.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds