Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30215 * 126.78538 * 2 1 4 4 O 1.20922 * 111.64176 * 180.26591 * 3 2 1 5 5 C 1.34063 * 111.55339 * 359.72849 * 4 3 2 6 6 Cl 1.73600 * 126.79596 * 179.97438 * 5 4 3 7 7 C 1.35672 * 106.40591 * 0.02562 * 5 4 3 8 8 C 1.50704 * 128.01119 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47301 * 90.02265 * 8 7 5 10 10 O 1.21284 * 120.00190 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99720 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99951 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.49249 * 324.99438 * 12 11 9 14 14 C 1.53034 * 109.49798 * 85.05926 * 12 11 9 15 15 C 1.53046 * 109.53698 * 181.34773 * 14 12 11 16 16 C 1.53185 * 109.31276 * 298.63794 * 15 14 12 17 17 N 1.46930 * 108.77761 * 54.63730 * 16 15 14 18 18 C 1.36933 * 120.63061 * 126.41309 * 17 16 15 19 19 H 1.08004 * 119.99705 * 209.01356 * 18 17 16 20 20 C 1.38806 * 120.00405 * 29.00852 * 18 17 16 21 21 N 1.31614 * 120.00086 * 15.01936 * 20 18 17 22 22 Si 1.86802 * 120.00189 * 195.02060 * 20 18 17 23 23 H 1.48501 * 109.47024 * 59.99917 * 22 20 18 24 24 H 1.48502 * 109.47281 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47155 * 300.00048 * 22 20 18 26 26 C 1.46925 * 118.73438 * 306.38947 * 17 16 15 27 27 H 1.09001 * 109.58529 * 293.81784 * 26 17 16 28 28 C 1.52997 * 109.58587 * 173.39701 * 26 17 16 29 29 H 1.08997 * 109.46896 * 270.17732 * 1 2 3 30 30 H 1.08993 * 109.47267 * 30.18139 * 1 2 3 31 31 H 1.09002 * 109.46706 * 150.18471 * 1 2 3 32 32 H 1.08993 * 109.47012 * 330.01489 * 8 7 5 33 33 H 1.09010 * 109.46480 * 210.02008 * 8 7 5 34 34 H 0.97003 * 120.00157 * 359.97438 * 11 9 8 35 35 H 1.08990 * 109.46574 * 301.37461 * 14 12 11 36 36 H 1.09002 * 109.45797 * 61.34443 * 14 12 11 37 37 H 1.08996 * 109.49596 * 58.59094 * 15 14 12 38 38 H 1.09005 * 109.49440 * 178.68511 * 15 14 12 39 39 H 1.09004 * 109.58515 * 174.42306 * 16 15 14 40 40 H 1.08998 * 109.58896 * 294.84761 * 16 15 14 41 41 H 0.97002 * 120.00256 * 179.97438 * 21 20 18 42 42 H 1.09006 * 109.47033 * 300.71025 * 28 26 17 43 43 H 1.08999 * 109.47515 * 60.70777 * 28 26 17 44 44 H 1.08999 * 109.47343 * 180.70742 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0429 0.0000 4 8 3.4540 0.7270 -0.0052 5 6 3.6037 -0.6053 -0.0036 6 17 5.1012 -1.4834 -0.0100 7 6 2.3531 -1.1314 0.0030 8 6 1.9581 -2.5857 0.0068 9 6 1.8326 -3.0685 1.4288 10 8 2.0435 -2.3067 2.3487 11 7 1.4868 -4.3470 1.6783 12 6 1.3653 -4.8166 3.0607 13 1 2.1130 -4.3212 3.6802 14 6 -0.0333 -4.4909 3.5897 15 6 -0.1501 -4.9509 5.0447 16 6 0.0521 -6.4678 5.1143 17 7 1.3322 -6.8040 4.4761 18 6 2.2715 -7.5437 5.1437 19 1 3.3204 -7.4103 4.9232 20 6 1.8758 -8.4648 6.1037 21 7 0.6178 -8.8459 6.1710 22 14 3.1286 -9.1635 7.3002 23 1 3.7293 -8.0583 8.0895 24 1 2.4575 -10.1187 8.2180 25 1 4.1951 -9.8686 6.5446 26 6 1.5848 -6.3319 3.1079 27 1 0.8968 -6.8224 2.4193 28 6 3.0273 -6.6538 2.7125 29 1 -0.3633 0.0032 1.0276 30 1 -0.3633 0.8883 -0.5166 31 1 -0.3633 -0.8917 -0.5110 32 1 2.7194 -3.1703 -0.5096 33 1 1.0017 -2.7037 -0.5028 34 1 1.3185 -4.9564 0.9425 35 1 -0.2013 -3.4155 3.5342 36 1 -0.7794 -5.0066 2.9850 37 1 0.6118 -4.4543 5.6455 38 1 -1.1386 -4.6976 5.4280 39 1 0.0685 -6.7867 6.1565 40 1 -0.7608 -6.9693 4.5893 41 1 0.3414 -9.4899 6.8416 42 1 3.7118 -6.1668 3.4071 43 1 3.1814 -7.7323 2.7466 44 1 3.2165 -6.2917 1.7019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993987590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = 18.231528 kcal Electronic energy + Delta-G solvation = -28092.890477 eV Core-core repulsion = 24074.335861 eV Total energy + Delta-G solvation = -4018.554616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.13378 -41.03758 -39.25778 -38.26753 -36.44386 -35.79334 -34.25755 -33.54993 -33.30917 -31.24411 -29.93138 -29.37739 -27.72090 -26.81516 -24.26933 -23.05435 -22.54349 -22.28908 -21.35801 -20.94030 -19.03635 -18.82428 -18.31655 -17.83015 -17.30255 -16.77487 -16.65364 -15.90940 -15.60454 -15.50466 -15.12894 -14.84986 -14.69674 -14.41488 -14.31239 -14.22003 -14.09655 -13.65005 -13.46217 -13.33387 -13.20911 -13.09926 -12.86257 -12.76855 -12.67830 -12.50349 -12.34558 -12.00814 -11.95514 -11.79297 -11.73896 -11.58708 -11.19721 -11.11574 -10.81572 -10.50598 -10.26877 -9.94186 -8.62994 -7.84119 -5.29615 -0.03314 0.14075 0.97317 1.47071 1.50169 1.55476 1.71678 2.24358 2.51224 2.57804 3.00911 3.31623 3.48550 3.64512 3.76951 3.77877 3.93732 4.04365 4.14665 4.25792 4.40352 4.44460 4.56373 4.59277 4.64404 4.66434 4.70940 4.78806 4.82121 4.92048 4.97014 5.07705 5.16456 5.16867 5.27787 5.33694 5.49839 5.53778 5.65286 5.71998 5.79984 6.43572 6.68037 6.96901 7.18369 7.37286 7.89585 8.39885 9.22419 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018433 B = 0.002801 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.688968 B = 9994.883251 C =10906.658275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.042 3.958 3 N -0.376 5.376 4 O 0.091 5.909 5 C 0.003 3.997 6 Cl 0.060 6.940 7 C -0.154 4.154 8 C -0.061 4.061 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.704 5.704 12 C 0.149 3.851 13 H 0.052 0.948 14 C -0.107 4.107 15 C -0.131 4.131 16 C 0.176 3.824 17 N -0.602 5.602 18 C -0.254 4.254 19 H 0.071 0.929 20 C -0.048 4.048 21 N -0.933 5.933 22 Si 0.958 3.042 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.274 1.274 26 C 0.164 3.836 27 H 0.038 0.962 28 C -0.128 4.128 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.137 0.863 33 H 0.153 0.847 34 H 0.416 0.584 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.005 0.995 41 H 0.248 0.752 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 13.236 -18.882 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 N -0.086 5.086 4 O 0.028 5.972 5 C -0.087 4.087 6 Cl 0.088 6.912 7 C -0.159 4.159 8 C -0.101 4.101 9 C 0.302 3.698 10 O -0.460 6.460 11 N -0.356 5.356 12 C 0.042 3.958 13 H 0.071 0.929 14 C -0.146 4.146 15 C -0.171 4.171 16 C 0.050 3.950 17 N -0.325 5.325 18 C -0.384 4.384 19 H 0.089 0.911 20 C -0.243 4.243 21 N -0.579 5.579 22 Si 0.787 3.213 23 H -0.211 1.211 24 H -0.222 1.222 25 H -0.200 1.200 26 C 0.057 3.943 27 H 0.056 0.944 28 C -0.186 4.186 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.155 0.845 33 H 0.171 0.829 34 H 0.254 0.746 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.770 14.862 -18.128 23.454 hybrid contribution 0.749 -1.593 1.050 2.050 sum 1.519 13.269 -17.078 21.680 Atomic orbital electron populations 1.20409 0.83111 1.05864 1.04230 1.23842 1.00488 0.87449 0.99945 1.73913 0.88820 1.24027 1.21802 1.84859 1.22291 1.21257 1.68750 1.24803 0.91807 0.84852 1.07212 1.98462 1.27668 1.68484 1.96577 1.20416 0.89676 0.97886 1.07909 1.20133 1.07987 0.88258 0.93699 1.20888 0.75609 0.81676 0.91648 1.90735 1.51339 1.55837 1.48108 1.45841 1.69756 1.11451 1.08580 1.21232 0.96691 0.95462 0.82448 0.92939 1.21664 0.96847 1.00030 0.96046 1.22029 1.00576 0.97913 0.96573 1.20628 0.86123 0.90437 0.97764 1.44273 1.16611 1.60355 1.11310 1.19409 0.89044 1.13244 1.16677 0.91101 1.25715 0.97712 0.97856 1.03024 1.70142 1.17001 1.34465 1.36307 0.85482 0.78906 0.77674 0.79238 1.21060 1.22156 1.19968 1.20747 0.96271 0.90588 0.86652 0.94438 1.21739 0.95216 1.01063 1.00560 0.90108 0.89184 0.86906 0.84533 0.82889 0.74626 0.92639 0.91157 0.94241 0.91120 0.92895 0.97643 0.94254 0.94452 0.93455 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.39 71.24 0.74 -0.33 16 2 C 0.04 0.87 7.32 43.55 0.32 1.19 16 3 N -0.38 -9.53 12.07 -49.43 -0.60 -10.13 16 4 O 0.09 2.29 11.20 71.42 0.80 3.09 16 5 C 0.00 0.07 8.12 67.23 0.55 0.62 16 6 Cl 0.06 1.11 29.23 -2.72 -0.08 1.03 16 7 C -0.15 -3.05 4.82 -19.71 -0.10 -3.14 16 8 C -0.06 -0.84 6.10 29.10 0.18 -0.66 16 9 C 0.51 11.92 7.79 87.66 0.68 12.60 16 10 O -0.58 -19.70 15.70 -3.04 -0.05 -19.75 16 11 N -0.70 -15.58 4.58 -442.16 -2.02 -17.60 16 12 C 0.15 4.80 1.99 45.06 0.09 4.88 16 13 H 0.05 2.09 7.58 -2.39 -0.02 2.07 16 14 C -0.11 -3.46 5.46 30.62 0.17 -3.29 16 15 C -0.13 -5.00 6.08 30.67 0.19 -4.82 16 16 C 0.18 8.26 5.29 86.36 0.46 8.72 16 17 N -0.60 -28.65 2.99 -675.25 -2.02 -30.67 16 18 C -0.25 -13.38 8.61 84.03 0.72 -12.65 16 19 H 0.07 3.65 6.20 -2.91 -0.02 3.63 16 20 C -0.05 -2.60 4.96 84.86 0.42 -2.18 16 21 N -0.93 -53.84 11.14 21.65 0.24 -53.60 16 22 Si 0.96 44.41 29.58 68.60 2.03 46.44 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 C 0.16 6.03 3.03 44.97 0.14 6.17 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 C -0.13 -4.30 7.84 71.98 0.56 -3.74 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 0.84 7.65 -2.39 -0.02 0.82 16 32 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.15 0.90 7.65 -2.38 -0.02 0.88 16 34 H 0.42 6.12 8.61 -92.71 -0.80 5.32 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.05 2.86 6.06 -2.38 -0.01 2.85 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 42 H 0.04 1.37 7.40 -2.38 -0.02 1.35 16 43 H 0.05 1.73 7.66 -2.39 -0.02 1.72 16 44 H 0.08 1.99 7.79 -2.39 -0.02 1.97 16 Total: -1.00 -71.83 373.77 3.65 -68.17 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.24 Total: 9.66 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.11 Total: 3.37 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -4.40 Total: -112.00 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.75 Total: -16.66 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 17 Polarization: 1.11 SS G_CDS: -0.08 Total: 1.03 kcal Total: -71.83 3.65 -68.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993987590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.404 kcal (2) G-P(sol) polarization free energy of solvation -71.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds