Wall clock time and date at job start Sat Apr 11 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30216 * 126.78838 * 2 1 4 4 O 1.20921 * 111.64555 * 179.97438 * 3 2 1 5 5 C 1.34073 * 111.55203 * 359.75995 * 4 3 2 6 6 Cl 1.73593 * 126.79831 * 180.25773 * 5 4 3 7 7 C 1.35678 * 106.40416 * 0.38480 * 5 4 3 8 8 C 1.50704 * 128.01167 * 179.91069 * 7 5 4 9 9 C 1.50696 * 109.46832 * 269.67612 * 8 7 5 10 10 O 1.21282 * 120.00094 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99529 * 180.02562 * 9 8 7 12 12 C 1.47483 * 127.03508 * 0.02562 * 11 9 8 13 13 C 1.54004 * 107.08427 * 205.41336 * 12 11 9 14 14 H 1.09002 * 110.32612 * 117.58996 * 13 12 11 15 15 N 1.46499 * 110.32826 * 239.70363 * 13 12 11 16 16 C 1.36939 * 120.00067 * 272.16553 * 15 13 12 17 17 H 1.08001 * 119.99735 * 359.97438 * 16 15 13 18 18 C 1.38803 * 120.00265 * 179.97438 * 16 15 13 19 19 N 1.31622 * 120.00427 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00089 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47425 * 89.99915 * 20 18 16 22 22 H 1.48497 * 109.47638 * 209.99970 * 20 18 16 23 23 H 1.48500 * 109.47335 * 330.00029 * 20 18 16 24 24 C 1.54625 * 105.13368 * 358.64533 * 13 12 11 25 25 C 1.52999 * 110.73798 * 96.53892 * 24 13 12 26 26 C 1.52993 * 110.73731 * 219.86169 * 24 13 12 27 27 C 1.48117 * 127.03008 * 179.97438 * 11 9 8 28 28 H 1.08999 * 109.47052 * 270.02339 * 1 2 3 29 29 H 1.09007 * 109.47153 * 30.01914 * 1 2 3 30 30 H 1.08998 * 109.47411 * 150.02468 * 1 2 3 31 31 H 1.08999 * 109.46649 * 149.67259 * 8 7 5 32 32 H 1.09000 * 109.46807 * 29.67701 * 8 7 5 33 33 H 1.09001 * 109.91158 * 86.06000 * 12 11 9 34 34 H 1.08991 * 110.07287 * 324.86608 * 12 11 9 35 35 H 0.97000 * 119.99964 * 92.16169 * 15 13 12 36 36 H 0.96997 * 120.00530 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.47203 * 60.00020 * 25 24 13 38 38 H 1.08994 * 109.47146 * 179.97438 * 25 24 13 39 39 H 1.09002 * 109.47218 * 299.99746 * 25 24 13 40 40 H 1.09001 * 109.47019 * 60.00374 * 26 24 13 41 41 H 1.09000 * 109.46864 * 179.97438 * 26 24 13 42 42 H 1.08995 * 109.47592 * 300.00183 * 26 24 13 43 43 H 1.09001 * 110.66111 * 259.17821 * 27 11 9 44 44 H 1.08999 * 110.66710 * 22.13257 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7270 0.0005 5 6 3.6037 -0.6054 0.0061 6 17 5.1011 -1.4835 0.0151 7 6 2.3531 -1.1315 0.0006 8 6 1.9580 -2.5858 0.0016 9 6 1.8262 -3.0714 -1.4189 10 8 2.0322 -2.3113 -2.3412 11 7 1.4783 -4.3502 -1.6643 12 6 1.1919 -5.3996 -0.6684 13 6 1.4785 -6.7540 -1.3431 14 1 2.2840 -7.2730 -0.8236 15 7 0.2690 -7.5805 -1.3594 16 6 -0.0188 -8.3939 -0.2960 17 1 0.6461 -8.4264 0.5545 18 6 -1.1650 -9.1766 -0.3111 19 7 -1.4414 -9.9588 0.7108 20 14 -2.3154 -9.1199 -1.7816 21 1 -1.9021 -10.1450 -2.7734 22 1 -3.7044 -9.3955 -1.3346 23 1 -2.2544 -7.7741 -2.4063 24 6 1.9085 -6.4030 -2.7863 25 6 3.4336 -6.3622 -2.9024 26 6 1.3140 -7.3972 -3.7857 27 6 1.3042 -4.9887 -2.9894 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8899 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 1.0040 -2.7027 0.5157 32 1 2.7217 -3.1694 0.5157 33 1 0.1458 -5.3494 -0.3664 34 1 1.8359 -5.2749 0.2021 35 1 -0.3280 -7.5515 -2.1233 36 1 -2.2425 -10.5055 0.7004 37 1 3.8441 -7.3373 -2.6402 38 1 3.7135 -6.1139 -3.9261 39 1 3.8296 -5.6068 -2.2237 40 1 0.2261 -7.3664 -3.7254 41 1 1.6293 -7.1307 -4.7945 42 1 1.6626 -8.4025 -3.5493 43 1 0.2475 -5.0569 -3.2476 44 1 1.8515 -4.4399 -3.7557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996406357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:25 Heat of formation + Delta-G solvation = 27.238168 kcal Electronic energy + Delta-G solvation = -28208.002754 eV Core-core repulsion = 24189.838695 eV Total energy + Delta-G solvation = -4018.164058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -46.18104 -41.36364 -39.47209 -38.29965 -36.43741 -35.85031 -34.62816 -33.50308 -33.00045 -30.41689 -29.70231 -29.51910 -28.16917 -27.09048 -25.44366 -23.48047 -22.86908 -22.56726 -20.57333 -20.17227 -19.34391 -19.02465 -18.76328 -17.95426 -17.27555 -16.64447 -16.51438 -16.22510 -15.93147 -15.37077 -15.17407 -14.78482 -14.55361 -14.39826 -14.28847 -14.16836 -13.87132 -13.70533 -13.54568 -13.52009 -13.29993 -13.26885 -13.08438 -12.92884 -12.88784 -12.74967 -12.54789 -12.19083 -11.99987 -11.92613 -11.84164 -11.54588 -11.32083 -11.20936 -10.99482 -10.88076 -10.32576 -9.67981 -9.29342 -7.96596 -5.29581 -0.06781 0.08470 0.91001 1.40973 1.42897 1.49964 1.56688 1.99189 2.47485 2.52258 2.93997 3.34109 3.37830 3.41477 3.59350 3.71265 3.71666 3.82787 3.93731 4.00095 4.32590 4.35671 4.40942 4.47679 4.58479 4.59601 4.61433 4.66403 4.69739 4.77581 4.87353 4.94375 5.01112 5.07197 5.09080 5.12138 5.14888 5.35069 5.41382 5.50385 5.85963 6.27588 6.54969 6.92400 7.08632 7.14248 7.89245 8.06766 9.24515 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015390 B = 0.003076 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.952536 B = 9101.114959 C = 9686.223600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.041 3.959 3 N -0.371 5.371 4 O 0.097 5.903 5 C 0.008 3.992 6 Cl 0.064 6.936 7 C -0.156 4.156 8 C -0.061 4.061 9 C 0.535 3.465 10 O -0.577 6.577 11 N -0.609 5.609 12 C 0.081 3.919 13 C 0.173 3.827 14 H 0.072 0.928 15 N -0.741 5.741 16 C -0.221 4.221 17 H 0.067 0.933 18 C -0.057 4.057 19 N -0.982 5.982 20 Si 0.938 3.062 21 H -0.280 1.280 22 H -0.303 1.303 23 H -0.253 1.253 24 C -0.082 4.082 25 C -0.123 4.123 26 C -0.128 4.128 27 C 0.116 3.884 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.367 0.633 36 H 0.255 0.745 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.820 16.526 -3.525 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 N -0.080 5.080 4 O 0.034 5.966 5 C -0.082 4.082 6 Cl 0.092 6.908 7 C -0.161 4.161 8 C -0.101 4.101 9 C 0.325 3.675 10 O -0.457 6.457 11 N -0.342 5.342 12 C -0.044 4.044 13 C 0.063 3.937 14 H 0.090 0.910 15 N -0.385 5.385 16 C -0.352 4.352 17 H 0.085 0.915 18 C -0.249 4.249 19 N -0.633 5.633 20 Si 0.767 3.233 21 H -0.206 1.206 22 H -0.230 1.230 23 H -0.177 1.177 24 C -0.083 4.083 25 C -0.181 4.181 26 C -0.186 4.186 27 C -0.006 4.006 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.203 0.797 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.908 18.145 -3.786 21.018 hybrid contribution -0.852 -1.245 -0.517 1.595 sum 9.056 16.900 -4.303 19.650 Atomic orbital electron populations 1.20373 0.83387 1.04666 1.05165 1.23765 1.00361 0.87455 1.00142 1.73904 0.88784 1.23674 1.21655 1.84863 1.22176 1.21028 1.68577 1.24717 0.91669 0.84835 1.06973 1.98458 1.27322 1.68472 1.96549 1.20321 0.90089 0.97345 1.08315 1.20031 1.07041 0.88741 0.94245 1.20305 0.75842 0.79912 0.91433 1.90700 1.52583 1.54875 1.47526 1.48763 1.67032 1.09171 1.09229 1.23162 1.01608 0.87484 0.92158 1.21267 0.88718 0.89397 0.94321 0.91034 1.42945 1.25670 1.49746 1.20094 1.19042 1.04770 1.14751 0.96611 0.91493 1.25324 1.00272 0.99424 0.99833 1.69853 1.28519 1.31972 1.32911 0.85674 0.78489 0.78802 0.80369 1.20636 1.22983 1.17740 1.21935 0.97128 0.94011 0.95248 1.21650 0.92112 1.02054 1.02273 1.21623 0.99891 0.98717 0.98393 1.22558 1.00356 0.92166 0.85529 0.87409 0.89724 0.89498 0.84587 0.85231 0.91500 0.89073 0.79672 0.93570 0.91872 0.91432 0.92820 0.93724 0.90683 0.92386 0.91595 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.39 71.24 0.74 -0.55 16 2 C 0.04 0.95 7.32 43.55 0.32 1.27 16 3 N -0.37 -9.61 12.07 -49.42 -0.60 -10.21 16 4 O 0.10 2.44 11.20 71.32 0.80 3.24 16 5 C 0.01 0.19 8.12 67.23 0.55 0.73 16 6 Cl 0.06 1.18 29.23 -2.72 -0.08 1.10 16 7 C -0.16 -3.47 4.82 -19.71 -0.10 -3.56 16 8 C -0.06 -1.17 5.18 29.10 0.15 -1.02 16 9 C 0.54 13.75 7.89 87.66 0.69 14.44 16 10 O -0.58 -18.86 16.24 -3.04 -0.05 -18.91 16 11 N -0.61 -15.40 3.20 -809.03 -2.59 -17.99 16 12 C 0.08 2.14 6.55 86.53 0.57 2.71 16 13 C 0.17 5.28 3.10 45.88 0.14 5.42 16 14 H 0.07 2.27 7.82 -2.39 -0.02 2.25 16 15 N -0.74 -29.28 4.28 -318.72 -1.36 -30.64 16 16 C -0.22 -11.08 10.45 84.03 0.88 -10.20 16 17 H 0.07 3.66 8.06 -2.91 -0.02 3.63 16 18 C -0.06 -3.09 5.50 84.86 0.47 -2.62 16 19 N -0.98 -59.20 13.97 21.65 0.30 -58.89 16 20 Si 0.94 42.28 27.73 68.60 1.90 44.18 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 23 H -0.25 -10.18 6.52 99.48 0.65 -9.53 16 24 C -0.08 -2.05 0.94 -50.90 -0.05 -2.10 16 25 C -0.12 -2.63 8.50 71.98 0.61 -2.02 16 26 C -0.13 -3.26 7.84 71.98 0.56 -2.69 16 27 C 0.12 2.97 5.99 86.80 0.52 3.49 16 28 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.13 2.01 7.92 -2.39 -0.02 1.99 16 33 H 0.07 2.01 7.92 -2.39 -0.02 1.99 16 34 H 0.09 2.00 7.55 -2.39 -0.02 1.98 16 35 H 0.37 14.32 3.44 -92.71 -0.32 14.00 16 36 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.15 8.07 -2.39 -0.02 1.13 16 40 H 0.04 1.24 6.25 -2.39 -0.01 1.23 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 1.75 8.02 -2.39 -0.02 1.73 16 44 H 0.08 2.08 7.77 -2.39 -0.02 2.06 16 Total: -1.00 -66.86 377.48 5.03 -61.83 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.65 Total: 23.01 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 6.05 Total: 3.29 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -4.24 Total: -117.74 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.75 Total: -15.67 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.90 Total: 44.18 kcal Atomic # 17 Polarization: 1.18 SS G_CDS: -0.08 Total: 1.10 kcal Total: -66.86 5.03 -61.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996406357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.068 kcal (2) G-P(sol) polarization free energy of solvation -66.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds