Wall clock time and date at job start Sat Apr 11 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30208 * 126.78888 * 2 1 4 4 O 1.20922 * 111.64586 * 180.26623 * 3 2 1 5 5 C 1.34071 * 111.55090 * 359.73219 * 4 3 2 6 6 Cl 1.73596 * 126.79706 * 179.97438 * 5 4 3 7 7 C 1.35678 * 106.40376 * 359.97438 * 5 4 3 8 8 C 1.50702 * 128.01162 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47143 * 90.02836 * 8 7 5 10 10 O 1.21275 * 119.99961 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99872 * 179.97438 * 9 8 7 12 12 C 1.47018 * 125.64981 * 0.02817 * 11 9 8 13 13 C 1.54325 * 107.40412 * 178.82520 * 12 11 9 14 14 H 1.09002 * 110.72265 * 219.52294 * 13 12 11 15 15 N 1.46501 * 110.72113 * 96.24493 * 13 12 11 16 16 C 1.36931 * 119.99967 * 86.45843 * 15 13 12 17 17 H 1.08005 * 120.00140 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00234 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99941 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46966 * 59.99259 * 20 18 16 22 22 H 1.48495 * 109.46855 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46632 * 299.99251 * 20 18 16 24 24 C 1.55405 * 102.82616 * 337.97548 * 13 12 11 25 25 C 1.53000 * 110.89394 * 277.26684 * 24 13 12 26 26 C 1.52998 * 111.06990 * 153.48436 * 24 13 12 27 27 C 1.47426 * 125.64500 * 179.97438 * 11 9 8 28 28 H 1.09004 * 109.46823 * 270.17954 * 1 2 3 29 29 H 1.08999 * 109.47147 * 30.17523 * 1 2 3 30 30 H 1.08992 * 109.47218 * 150.17977 * 1 2 3 31 31 H 1.08997 * 109.46955 * 330.02378 * 8 7 5 32 32 H 1.09007 * 109.46827 * 210.03059 * 8 7 5 33 33 H 1.09002 * 109.88241 * 298.32048 * 12 11 9 34 34 H 1.09000 * 109.88049 * 59.33177 * 12 11 9 35 35 H 0.97002 * 119.99754 * 266.45742 * 15 13 12 36 36 H 0.96993 * 120.00092 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.47124 * 173.68399 * 25 24 13 38 38 H 1.09000 * 109.46711 * 293.68751 * 25 24 13 39 39 H 1.08996 * 109.47179 * 53.68650 * 25 24 13 40 40 H 1.08997 * 109.47394 * 306.20721 * 26 24 13 41 41 H 1.08994 * 109.47153 * 66.21219 * 26 24 13 42 42 H 1.09004 * 109.47185 * 186.21200 * 26 24 13 43 43 H 1.08999 * 110.36956 * 323.01018 * 27 11 9 44 44 H 1.09001 * 110.36709 * 85.22211 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0428 0.0000 4 8 3.4541 0.7269 -0.0052 5 6 3.6037 -0.6054 -0.0037 6 17 5.1012 -1.4836 -0.0102 7 6 2.3531 -1.1315 0.0040 8 6 1.9580 -2.5858 0.0082 9 6 1.8335 -3.0684 1.4303 10 8 2.0444 -2.3064 2.3499 11 7 1.4869 -4.3466 1.6803 12 6 1.2036 -5.3717 0.6652 13 6 0.8812 -6.6836 1.4114 14 1 1.3217 -7.5379 0.8974 15 7 -0.5664 -6.8545 1.5575 16 6 -1.2898 -7.4494 0.5586 17 1 -0.7933 -7.7921 -0.3372 18 6 -2.6616 -7.6109 0.6968 19 7 -3.2668 -7.1927 1.7882 20 14 -3.6483 -8.4231 -0.6657 21 1 -3.1450 -9.8025 -0.8866 22 1 -5.0803 -8.4755 -0.2759 23 1 -3.5040 -7.6370 -1.9173 24 6 1.5511 -6.4660 2.7967 25 6 3.0431 -6.8001 2.7399 26 6 0.8496 -7.2855 3.8817 27 6 1.3300 -4.9486 3.0168 28 1 -0.3633 0.0032 1.0277 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8915 -0.5110 31 1 2.7189 -3.1704 -0.5087 32 1 1.0013 -2.7038 -0.5007 33 1 0.3482 -5.0690 0.0613 34 1 2.0762 -5.5129 0.0274 35 1 -1.0124 -6.5463 2.3619 36 1 -4.2253 -7.3059 1.8849 37 1 3.5114 -6.5341 3.6875 38 1 3.1697 -7.8675 2.5589 39 1 3.5111 -6.2367 1.9326 40 1 -0.2171 -7.0616 3.8735 41 1 0.9995 -8.3477 3.6887 42 1 1.2667 -7.0309 4.8561 43 1 2.0790 -4.5516 3.7020 44 1 0.3276 -4.7617 3.4019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996406360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:29 Heat of formation + Delta-G solvation = 19.449319 kcal Electronic energy + Delta-G solvation = -28238.526216 eV Core-core repulsion = 24220.024408 eV Total energy + Delta-G solvation = -4018.501808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.19170 -41.33558 -39.38868 -38.29737 -36.43667 -35.67574 -34.60655 -33.49549 -32.55565 -30.39179 -29.67617 -29.39252 -27.98034 -27.10951 -25.62218 -23.50256 -22.85325 -22.57060 -20.40483 -20.01443 -19.07034 -19.00912 -18.77450 -17.89320 -17.29733 -16.72589 -16.42707 -16.13568 -15.76703 -15.43862 -15.04142 -14.81776 -14.49838 -14.36508 -14.18163 -14.14203 -13.74058 -13.68060 -13.52431 -13.34105 -13.25777 -13.17647 -13.00013 -12.92310 -12.75659 -12.71389 -12.61465 -12.14906 -12.04570 -12.00454 -11.78602 -11.39262 -11.31481 -11.16826 -10.95257 -10.83242 -10.32219 -9.58568 -8.95475 -7.87450 -5.15239 -0.07794 0.08928 0.90218 1.54175 1.54969 1.59781 1.60810 2.07581 2.48102 2.61755 2.93150 3.40724 3.42784 3.44713 3.69975 3.72872 3.85585 3.91469 3.97079 4.10199 4.35103 4.37404 4.47302 4.51416 4.53927 4.60844 4.67200 4.70094 4.73617 4.84450 4.91372 4.96975 5.07064 5.08876 5.13153 5.13775 5.31226 5.38516 5.44075 5.59346 5.64773 6.33663 6.58626 6.92205 7.13045 7.41791 8.16597 8.38937 9.35606 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.003304 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.007508 B = 8471.345140 C = 9673.938141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.039 3.961 3 N -0.370 5.370 4 O 0.100 5.900 5 C 0.010 3.990 6 Cl 0.067 6.933 7 C -0.156 4.156 8 C -0.057 4.057 9 C 0.528 3.472 10 O -0.582 6.582 11 N -0.602 5.602 12 C 0.078 3.922 13 C 0.169 3.831 14 H 0.080 0.920 15 N -0.723 5.723 16 C -0.233 4.233 17 H 0.084 0.916 18 C -0.070 4.070 19 N -0.969 5.969 20 Si 0.964 3.036 21 H -0.279 1.279 22 H -0.306 1.306 23 H -0.277 1.277 24 C -0.077 4.077 25 C -0.123 4.123 26 C -0.123 4.123 27 C 0.122 3.878 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.375 0.625 36 H 0.247 0.753 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.039 0.961 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.991 7.268 -4.767 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 N -0.079 5.079 4 O 0.036 5.964 5 C -0.081 4.081 6 Cl 0.095 6.905 7 C -0.161 4.161 8 C -0.097 4.097 9 C 0.317 3.683 10 O -0.463 6.463 11 N -0.334 5.334 12 C -0.048 4.048 13 C 0.059 3.941 14 H 0.098 0.902 15 N -0.363 5.363 16 C -0.365 4.365 17 H 0.102 0.898 18 C -0.263 4.263 19 N -0.620 5.620 20 Si 0.794 3.206 21 H -0.206 1.206 22 H -0.232 1.232 23 H -0.203 1.203 24 C -0.079 4.079 25 C -0.180 4.180 26 C -0.181 4.181 27 C -0.001 4.001 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.208 0.792 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.995 8.871 -4.476 18.830 hybrid contribution -1.111 -0.989 -0.066 1.488 sum 14.885 7.882 -4.542 17.445 Atomic orbital electron populations 1.20365 0.83738 1.05514 1.04122 1.23710 1.00203 0.87647 1.00343 1.73893 0.88813 1.23586 1.21597 1.84856 1.22074 1.21046 1.68453 1.24680 0.91636 0.84781 1.06965 1.98450 1.27063 1.68444 1.96553 1.20320 0.90169 0.97350 1.08235 1.19999 1.06840 0.88811 0.94046 1.20401 0.76152 0.80169 0.91544 1.90683 1.52871 1.54859 1.47914 1.48418 1.66638 1.09549 1.08796 1.23146 1.00892 0.89308 0.91419 1.21508 0.84279 0.94475 0.93807 0.90198 1.42636 1.02452 1.70760 1.20492 1.19598 0.89936 1.29230 0.97724 0.89815 1.25424 0.98034 1.03355 0.99453 1.69804 1.09000 1.54346 1.28847 0.85351 0.77203 0.78739 0.79273 1.20563 1.23248 1.20332 1.22001 0.97346 0.92658 0.95873 1.21641 0.91773 1.02200 1.02400 1.21531 0.99543 0.99630 0.97352 1.22191 1.00024 0.92937 0.84913 0.90168 0.88739 0.88157 0.84746 0.85135 0.91864 0.88808 0.79155 0.94373 0.91754 0.91178 0.92081 0.94240 0.92213 0.91593 0.90910 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 10.39 71.24 0.74 -0.90 16 2 C 0.04 1.01 7.32 43.55 0.32 1.33 16 3 N -0.37 -10.35 12.07 -49.43 -0.60 -10.95 16 4 O 0.10 2.65 11.20 71.34 0.80 3.45 16 5 C 0.01 0.23 8.12 67.23 0.55 0.78 16 6 Cl 0.07 1.25 29.23 -2.72 -0.08 1.18 16 7 C -0.16 -3.81 4.82 -19.71 -0.10 -3.91 16 8 C -0.06 -1.24 5.29 29.10 0.15 -1.09 16 9 C 0.53 15.49 7.84 87.66 0.69 16.18 16 10 O -0.58 -21.47 16.29 -3.01 -0.05 -21.52 16 11 N -0.60 -17.44 3.31 -811.81 -2.69 -20.13 16 12 C 0.08 2.13 5.83 86.73 0.51 2.63 16 13 C 0.17 5.41 2.88 46.27 0.13 5.54 16 14 H 0.08 2.44 8.03 -2.39 -0.02 2.42 16 15 N -0.72 -31.41 4.60 -316.91 -1.46 -32.87 16 16 C -0.23 -11.38 9.98 84.03 0.84 -10.54 16 17 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 18 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 19 N -0.97 -55.96 13.06 21.65 0.28 -55.68 16 20 Si 0.96 42.97 29.55 68.60 2.03 45.00 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.31 -14.21 7.11 99.48 0.71 -13.51 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 C -0.08 -2.12 0.83 -50.70 -0.04 -2.17 16 25 C -0.12 -2.56 8.60 71.98 0.62 -1.94 16 26 C -0.12 -3.62 8.35 71.98 0.60 -3.02 16 27 C 0.12 3.74 5.82 86.85 0.51 4.24 16 28 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.10 1.73 7.65 -2.39 -0.02 1.72 16 31 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.13 2.43 7.65 -2.38 -0.02 2.41 16 33 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.37 18.22 6.02 -92.71 -0.56 17.66 16 36 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.20 7.81 -2.39 -0.02 1.18 16 40 H 0.04 1.44 6.18 -2.39 -0.01 1.42 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.07 2.18 7.95 -2.39 -0.02 2.16 16 44 H 0.04 1.52 8.04 -2.39 -0.02 1.50 16 Total: -1.00 -65.33 380.86 4.68 -60.65 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.47 Total: 26.98 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 5.98 Total: 3.89 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -4.46 Total: -119.63 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.75 Total: -18.07 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 17 Polarization: 1.25 SS G_CDS: -0.08 Total: 1.18 kcal Total: -65.33 4.68 -60.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996406360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.097 kcal (2) G-P(sol) polarization free energy of solvation -65.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds