Wall clock time and date at job start Sat Apr 11 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30205 * 126.79131 * 2 1 4 4 O 1.20916 * 111.64929 * 180.02562 * 3 2 1 5 5 C 1.34065 * 111.54940 * 359.76301 * 4 3 2 6 6 Cl 1.73604 * 126.79706 * 180.25648 * 5 4 3 7 7 C 1.35669 * 106.40899 * 0.37989 * 5 4 3 8 8 C 1.50697 * 128.01720 * 179.91803 * 7 5 4 9 9 C 1.53002 * 109.46658 * 269.67438 * 8 7 5 10 10 C 1.50705 * 109.47038 * 179.97438 * 9 8 7 11 11 O 1.21275 * 119.99983 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99968 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.63015 * 359.97438 * 12 10 9 14 14 C 1.53197 * 108.77500 * 126.41163 * 13 12 10 15 15 C 1.53036 * 109.31163 * 54.63555 * 14 13 12 16 16 C 1.53045 * 109.53904 * 298.63062 * 15 14 13 17 17 H 1.08997 * 109.52129 * 301.40465 * 16 15 14 18 18 N 1.46493 * 109.49861 * 181.31693 * 16 15 14 19 19 C 1.36945 * 119.99892 * 155.16163 * 18 16 15 20 20 H 1.08000 * 119.99422 * 359.72792 * 19 18 16 21 21 C 1.38811 * 120.00031 * 179.72716 * 19 18 16 22 22 N 1.31616 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47389 * 59.99917 * 23 21 19 25 25 H 1.48501 * 109.47057 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47102 * 299.99569 * 23 21 19 27 27 C 1.46928 * 120.62939 * 180.02562 * 12 10 9 28 28 H 1.09002 * 109.47223 * 269.97384 * 1 2 3 29 29 H 1.09002 * 109.47261 * 29.97321 * 1 2 3 30 30 H 1.08998 * 109.47674 * 149.97613 * 1 2 3 31 31 H 1.08993 * 109.47382 * 149.67747 * 8 7 5 32 32 H 1.08998 * 109.47175 * 29.67170 * 8 7 5 33 33 H 1.09002 * 109.47053 * 60.00213 * 9 8 7 34 34 H 1.09000 * 109.47491 * 299.99405 * 9 8 7 35 35 H 1.09003 * 109.58630 * 246.19528 * 13 12 10 36 36 H 1.08996 * 109.59193 * 6.62362 * 13 12 10 37 37 H 1.08998 * 109.49332 * 174.58233 * 14 13 12 38 38 H 1.08995 * 109.49626 * 294.65043 * 14 13 12 39 39 H 1.09002 * 109.45549 * 178.61382 * 15 14 13 40 40 H 1.08992 * 109.46447 * 58.65358 * 15 14 13 41 41 H 0.97000 * 120.00738 * 334.89628 * 18 16 15 42 42 H 0.97004 * 119.99151 * 179.97438 * 22 21 19 43 43 H 1.08999 * 109.58560 * 113.80345 * 27 12 10 44 44 H 1.08997 * 109.70489 * 353.44402 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0427 0.0000 4 8 3.4540 0.7269 -0.0005 5 6 3.6036 -0.6054 0.0042 6 17 5.1011 -1.4836 0.0116 7 6 2.3531 -1.1315 -0.0006 8 6 1.9580 -2.5858 0.0000 9 6 1.8230 -3.0781 -1.4424 10 6 1.4285 -4.5326 -1.4419 11 8 1.2704 -5.1176 -0.3914 12 7 1.2504 -5.1829 -2.6088 13 6 1.4366 -4.4872 -3.8895 14 6 2.4290 -5.2831 -4.7432 15 6 1.9375 -6.7261 -4.8775 16 6 1.8647 -7.3730 -3.4924 17 1 2.8492 -7.3460 -3.0255 18 7 1.4242 -8.7639 -3.6248 19 6 1.7529 -9.6808 -2.6623 20 1 2.3406 -9.3795 -1.8077 21 6 1.3308 -10.9975 -2.7849 22 7 0.6150 -11.3647 -3.8266 23 14 1.7786 -12.2481 -1.4715 24 1 1.2235 -11.8136 -0.1645 25 1 1.2124 -13.5719 -1.8349 26 1 3.2565 -12.3531 -1.3714 27 6 0.8652 -6.6007 -2.6245 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.0044 -2.7030 0.5146 32 1 2.7220 -3.1697 0.5132 33 1 2.7767 -2.9609 -1.9570 34 1 1.0589 -2.4943 -1.9556 35 1 0.4813 -4.4172 -4.4096 36 1 1.8305 -3.4872 -3.7083 37 1 2.5029 -4.8305 -5.7320 38 1 3.4084 -5.2748 -4.2651 39 1 2.6291 -7.2883 -5.5049 40 1 0.9475 -6.7317 -5.3333 41 1 0.8965 -9.0346 -4.3924 42 1 0.3204 -12.2849 -3.9124 43 1 -0.1366 -6.7026 -3.0417 44 1 0.8802 -6.9969 -1.6092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001041882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:15 Heat of formation + Delta-G solvation = 25.294255 kcal Electronic energy + Delta-G solvation = -27316.993868 eV Core-core repulsion = 23298.745515 eV Total energy + Delta-G solvation = -4018.248353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -45.44338 -40.03603 -37.66361 -37.44211 -36.10881 -34.50921 -33.46275 -32.32864 -31.30053 -30.83363 -29.17188 -28.33643 -26.18847 -24.43779 -23.85831 -21.95984 -21.91401 -21.65084 -20.14345 -18.75922 -18.20679 -18.08524 -17.10735 -17.04151 -16.08259 -15.65628 -15.35903 -14.82631 -14.45213 -14.17653 -13.84990 -13.80056 -13.72541 -13.48612 -13.31086 -13.21557 -13.01921 -12.92109 -12.65860 -12.50116 -12.40518 -12.23515 -12.12354 -11.55373 -11.36021 -11.11041 -11.04908 -10.84292 -10.69292 -10.59983 -10.33375 -10.24661 -9.85648 -9.80382 -9.65248 -9.46702 -9.07741 -8.36451 -7.01498 -5.80004 -3.09879 0.70093 0.80868 1.64813 2.77214 3.11870 3.26901 3.45034 3.48873 3.50674 3.63051 4.14691 4.41112 4.43621 4.56815 4.73091 4.83851 4.92071 4.94529 5.06259 5.09412 5.13532 5.22801 5.26753 5.34708 5.46730 5.52562 5.59956 5.62372 5.71475 5.76944 5.87796 5.90484 6.01154 6.14133 6.19127 6.32350 6.47057 6.70750 6.81018 6.98931 7.63694 7.66405 7.69887 8.34678 8.38985 9.49990 10.03936 10.39040 11.42192 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.002409 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.885221 B =11618.263011 C =11932.481198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.034 3.966 3 N -0.348 5.348 4 O 0.109 5.891 5 C -0.001 4.001 6 Cl 0.052 6.948 7 C -0.163 4.163 8 C -0.031 4.031 9 C -0.135 4.135 10 C 0.510 3.490 11 O -0.541 6.541 12 N -0.606 5.606 13 C 0.107 3.893 14 C -0.130 4.130 15 C -0.126 4.126 16 C 0.169 3.831 17 H 0.050 0.950 18 N -0.718 5.718 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.010 4.010 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.092 3.908 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.060 0.940 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 25.584 2.384 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 N -0.054 5.054 4 O 0.042 5.958 5 C -0.091 4.091 6 Cl 0.080 6.920 7 C -0.167 4.167 8 C -0.069 4.069 9 C -0.175 4.175 10 C 0.297 3.703 11 O -0.419 6.419 12 N -0.340 5.340 13 C -0.017 4.017 14 C -0.169 4.169 15 C -0.165 4.165 16 C 0.058 3.942 17 H 0.068 0.932 18 N -0.359 5.359 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.206 4.206 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.033 4.033 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.309 26.352 3.070 26.735 hybrid contribution 0.247 -1.625 0.319 1.675 sum 3.556 24.726 3.388 25.209 Atomic orbital electron populations 1.20258 0.85082 1.04308 1.04012 1.23380 0.99217 0.87818 1.02020 1.73947 0.88567 1.23004 1.19930 1.84914 1.22084 1.20775 1.68071 1.24643 0.91235 0.84873 1.08350 1.98477 1.28051 1.68777 1.96660 1.20931 0.89771 0.98428 1.07601 1.19735 1.04333 0.86338 0.96518 1.21657 1.03741 0.93940 0.98141 1.20454 0.77456 0.88608 0.83739 1.90716 1.51479 1.68840 1.30824 1.48299 1.68030 1.12435 1.05205 1.21745 0.99685 0.95565 0.84683 1.21884 0.99015 0.96514 0.99508 1.21823 1.01479 0.94385 0.98780 1.20497 0.95743 0.85438 0.92560 0.93178 1.42374 1.64127 1.02513 1.26878 1.19221 1.27734 0.89409 1.01069 0.91111 1.24745 1.00460 0.97361 0.98076 1.69652 1.41276 1.17568 1.29557 0.86267 0.77956 0.80736 0.81255 1.21080 1.21673 1.21209 1.22793 0.99194 0.77482 1.03800 0.89606 0.90102 0.89421 0.88850 0.89024 0.88836 0.88897 0.91385 0.90341 0.91019 0.91577 0.91418 0.92044 0.78083 0.93405 0.92152 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.39 36.01 0.37 -0.12 16 2 C 0.03 0.31 7.32 -82.12 -0.60 -0.29 16 3 N -0.35 -3.70 12.07 33.43 0.40 -3.29 16 4 O 0.11 1.12 11.20 17.11 0.19 1.31 16 5 C 0.00 -0.01 8.12 29.81 0.24 0.23 16 6 Cl 0.05 0.43 29.23 -51.86 -1.52 -1.09 16 7 C -0.16 -1.48 5.58 -104.38 -0.58 -2.07 16 8 C -0.03 -0.30 4.90 -27.88 -0.14 -0.43 16 9 C -0.13 -1.27 4.03 -27.88 -0.11 -1.38 16 10 C 0.51 7.21 7.70 -10.98 -0.08 7.12 16 11 O -0.54 -9.91 15.40 5.56 0.09 -9.82 16 12 N -0.61 -8.58 2.97 -172.73 -0.51 -9.09 16 13 C 0.11 1.10 6.34 -3.71 -0.02 1.08 16 14 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 15 C -0.13 -1.90 5.35 -26.69 -0.14 -2.04 16 16 C 0.17 3.25 2.92 -67.78 -0.20 3.06 16 17 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 18 N -0.72 -17.58 5.12 -53.28 -0.27 -17.85 16 19 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.09 1.67 6.01 -3.68 -0.02 1.65 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.09 0.77 7.69 -51.93 -0.40 0.37 16 34 H 0.09 0.69 7.94 -51.93 -0.41 0.27 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.59 5.93 -51.93 -0.31 0.29 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.39 9.92 7.80 -40.82 -0.32 9.61 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.09 1.96 7.01 -51.93 -0.36 1.60 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -32.43 380.19 -8.30 -40.73 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.41 Total: 5.06 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.70 Total: -2.06 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.34 Total: -57.35 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.28 Total: -8.52 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -1.52 Total: -1.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.43 -8.30 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001041882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.023 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds