Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30205 * 126.79131 * 2 1 4 4 O 1.20916 * 111.64929 * 180.02562 * 3 2 1 5 5 C 1.34065 * 111.54940 * 359.76301 * 4 3 2 6 6 Cl 1.73604 * 126.79706 * 180.25648 * 5 4 3 7 7 C 1.35669 * 106.40899 * 0.37989 * 5 4 3 8 8 C 1.50697 * 128.01720 * 179.91803 * 7 5 4 9 9 C 1.53002 * 109.46658 * 269.67438 * 8 7 5 10 10 C 1.50705 * 109.47038 * 179.97438 * 9 8 7 11 11 O 1.21275 * 119.99983 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99968 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.63015 * 359.97438 * 12 10 9 14 14 C 1.53197 * 108.77500 * 126.41163 * 13 12 10 15 15 C 1.53036 * 109.31163 * 54.63555 * 14 13 12 16 16 C 1.53045 * 109.53904 * 298.63062 * 15 14 13 17 17 H 1.08997 * 109.52129 * 301.40465 * 16 15 14 18 18 N 1.46493 * 109.49861 * 181.31693 * 16 15 14 19 19 C 1.36945 * 119.99892 * 155.16163 * 18 16 15 20 20 H 1.08000 * 119.99422 * 359.72792 * 19 18 16 21 21 C 1.38811 * 120.00031 * 179.72716 * 19 18 16 22 22 N 1.31616 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47389 * 59.99917 * 23 21 19 25 25 H 1.48501 * 109.47057 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47102 * 299.99569 * 23 21 19 27 27 C 1.46928 * 120.62939 * 180.02562 * 12 10 9 28 28 H 1.09002 * 109.47223 * 269.97384 * 1 2 3 29 29 H 1.09002 * 109.47261 * 29.97321 * 1 2 3 30 30 H 1.08998 * 109.47674 * 149.97613 * 1 2 3 31 31 H 1.08993 * 109.47382 * 149.67747 * 8 7 5 32 32 H 1.08998 * 109.47175 * 29.67170 * 8 7 5 33 33 H 1.09002 * 109.47053 * 60.00213 * 9 8 7 34 34 H 1.09000 * 109.47491 * 299.99405 * 9 8 7 35 35 H 1.09003 * 109.58630 * 246.19528 * 13 12 10 36 36 H 1.08996 * 109.59193 * 6.62362 * 13 12 10 37 37 H 1.08998 * 109.49332 * 174.58233 * 14 13 12 38 38 H 1.08995 * 109.49626 * 294.65043 * 14 13 12 39 39 H 1.09002 * 109.45549 * 178.61382 * 15 14 13 40 40 H 1.08992 * 109.46447 * 58.65358 * 15 14 13 41 41 H 0.97000 * 120.00738 * 334.89628 * 18 16 15 42 42 H 0.97004 * 119.99151 * 179.97438 * 22 21 19 43 43 H 1.08999 * 109.58560 * 113.80345 * 27 12 10 44 44 H 1.08997 * 109.70489 * 353.44402 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0427 0.0000 4 8 3.4540 0.7269 -0.0005 5 6 3.6036 -0.6054 0.0042 6 17 5.1011 -1.4836 0.0116 7 6 2.3531 -1.1315 -0.0006 8 6 1.9580 -2.5858 0.0000 9 6 1.8230 -3.0781 -1.4424 10 6 1.4285 -4.5326 -1.4419 11 8 1.2704 -5.1176 -0.3914 12 7 1.2504 -5.1829 -2.6088 13 6 1.4366 -4.4872 -3.8895 14 6 2.4290 -5.2831 -4.7432 15 6 1.9375 -6.7261 -4.8775 16 6 1.8647 -7.3730 -3.4924 17 1 2.8492 -7.3460 -3.0255 18 7 1.4242 -8.7639 -3.6248 19 6 1.7529 -9.6808 -2.6623 20 1 2.3406 -9.3795 -1.8077 21 6 1.3308 -10.9975 -2.7849 22 7 0.6150 -11.3647 -3.8266 23 14 1.7786 -12.2481 -1.4715 24 1 1.2235 -11.8136 -0.1645 25 1 1.2124 -13.5719 -1.8349 26 1 3.2565 -12.3531 -1.3714 27 6 0.8652 -6.6007 -2.6245 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.0044 -2.7030 0.5146 32 1 2.7220 -3.1697 0.5132 33 1 2.7767 -2.9609 -1.9570 34 1 1.0589 -2.4943 -1.9556 35 1 0.4813 -4.4172 -4.4096 36 1 1.8305 -3.4872 -3.7083 37 1 2.5029 -4.8305 -5.7320 38 1 3.4084 -5.2748 -4.2651 39 1 2.6291 -7.2883 -5.5049 40 1 0.9475 -6.7317 -5.3333 41 1 0.8965 -9.0346 -4.3924 42 1 0.3204 -12.2849 -3.9124 43 1 -0.1366 -6.7026 -3.0417 44 1 0.8802 -6.9969 -1.6092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001041882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = 5.214620 kcal Electronic energy + Delta-G solvation = -27317.864586 eV Core-core repulsion = 23298.745515 eV Total energy + Delta-G solvation = -4019.119071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.15160 -41.19568 -38.79011 -38.27055 -36.86816 -36.18918 -34.28564 -33.81564 -32.70733 -31.77818 -29.99174 -29.66768 -27.23291 -25.86670 -25.31986 -23.22438 -22.67394 -22.41311 -21.48639 -19.88651 -19.11712 -18.95142 -18.80110 -18.09234 -17.01492 -16.81921 -16.60518 -16.18609 -15.69757 -15.44691 -15.32541 -15.02645 -14.65796 -14.33792 -14.23216 -14.05366 -13.96167 -13.67790 -13.66298 -13.51146 -13.50617 -13.28333 -13.01930 -12.88919 -12.84681 -12.46921 -12.26260 -12.25171 -11.98591 -11.87384 -11.79707 -11.64829 -11.32408 -11.09451 -11.00404 -10.77108 -10.28171 -9.69468 -8.99918 -7.98554 -5.27509 0.01277 0.09628 0.97178 1.44432 1.46977 1.53166 1.67997 2.05722 2.51754 2.54338 2.99235 3.34712 3.43806 3.57089 3.73512 3.78491 3.99640 4.01543 4.08061 4.17417 4.24637 4.30638 4.37828 4.42480 4.50366 4.64014 4.68199 4.69967 4.79409 4.80616 4.90847 4.94570 4.97963 5.04602 5.08909 5.17453 5.23634 5.40992 5.44858 5.49311 5.61926 6.24378 6.53789 6.96808 7.24036 7.30829 8.04035 8.28441 9.23983 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.002409 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.885221 B =11618.263011 C =11932.481198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.039 3.961 3 N -0.370 5.370 4 O 0.097 5.903 5 C -0.001 4.001 6 Cl 0.059 6.941 7 C -0.163 4.163 8 C -0.026 4.026 9 C -0.122 4.122 10 C 0.505 3.495 11 O -0.592 6.592 12 N -0.607 5.607 13 C 0.101 3.899 14 C -0.123 4.123 15 C -0.119 4.119 16 C 0.167 3.833 17 H 0.031 0.969 18 N -0.731 5.731 19 C -0.245 4.245 20 H 0.065 0.935 21 C -0.068 4.068 22 N -0.964 5.964 23 Si 0.967 3.033 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.278 1.278 27 C 0.108 3.892 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.377 0.623 42 H 0.253 0.747 43 H 0.056 0.944 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 27.980 1.607 28.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 N -0.079 5.079 4 O 0.033 5.967 5 C -0.091 4.091 6 Cl 0.087 6.913 7 C -0.167 4.167 8 C -0.064 4.064 9 C -0.161 4.161 10 C 0.295 3.705 11 O -0.472 6.472 12 N -0.339 5.339 13 C -0.020 4.020 14 C -0.161 4.161 15 C -0.157 4.157 16 C 0.057 3.943 17 H 0.049 0.951 18 N -0.371 5.371 19 C -0.377 4.377 20 H 0.083 0.917 21 C -0.261 4.261 22 N -0.614 5.614 23 Si 0.796 3.204 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.204 1.204 27 C -0.018 4.018 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.103 0.897 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.209 0.791 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.560 28.818 2.278 29.126 hybrid contribution 0.209 -2.310 0.580 2.390 sum 3.769 26.508 2.858 26.927 Atomic orbital electron populations 1.20425 0.83184 1.05389 1.04887 1.23818 1.00366 0.87218 1.00541 1.73958 0.88815 1.23815 1.21270 1.84899 1.22189 1.21096 1.68524 1.24783 0.91665 0.84777 1.07847 1.98483 1.27724 1.68517 1.96588 1.20842 0.89749 0.98086 1.08051 1.19622 1.03841 0.86351 0.96605 1.21662 1.05596 0.90226 0.98639 1.21321 0.76146 0.90311 0.82715 1.90700 1.53536 1.70318 1.32688 1.48340 1.67708 1.10662 1.07210 1.22115 1.00656 0.96687 0.82519 1.21882 0.98825 0.93604 1.01805 1.21741 1.01822 0.96853 0.95321 1.20675 0.94565 0.83531 0.95499 0.95114 1.42527 1.64190 1.04424 1.25932 1.19477 1.26695 0.90256 1.01229 0.91682 1.25478 1.01224 0.99170 1.00227 1.69784 1.42810 1.17598 1.31243 0.85313 0.77905 0.78358 0.78825 1.20884 1.21627 1.20409 1.22158 0.98559 0.80394 1.00713 0.88801 0.89264 0.88069 0.89005 0.90465 0.86809 0.85621 0.89743 0.86280 0.87319 0.91731 0.92360 0.91609 0.79086 0.93841 0.92612 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.39 71.24 0.74 -0.04 16 2 C 0.04 0.62 7.32 43.55 0.32 0.94 16 3 N -0.37 -7.23 12.07 -49.44 -0.60 -7.82 16 4 O 0.10 1.86 11.20 71.40 0.80 2.66 16 5 C 0.00 -0.01 8.12 67.22 0.55 0.53 16 6 Cl 0.06 0.88 29.23 -2.72 -0.08 0.80 16 7 C -0.16 -2.61 5.58 -19.71 -0.11 -2.72 16 8 C -0.03 -0.44 4.90 29.85 0.15 -0.30 16 9 C -0.12 -1.88 4.03 29.85 0.12 -1.76 16 10 C 0.51 13.54 7.70 87.66 0.67 14.21 16 11 O -0.59 -21.96 15.40 -3.02 -0.05 -22.00 16 12 N -0.61 -16.16 2.97 -818.78 -2.43 -18.59 16 13 C 0.10 1.67 6.34 86.36 0.55 2.21 16 14 C -0.12 -2.27 6.08 30.67 0.19 -2.08 16 15 C -0.12 -3.43 5.35 30.62 0.16 -3.26 16 16 C 0.17 6.53 2.92 45.09 0.13 6.66 16 17 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 18 N -0.73 -36.85 5.12 -322.48 -1.65 -38.50 16 19 C -0.24 -13.92 9.93 84.03 0.83 -13.08 16 20 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 21 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 22 N -0.96 -58.84 13.06 21.65 0.28 -58.56 16 23 Si 0.97 47.15 29.55 68.60 2.03 49.17 16 24 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 C 0.11 3.99 6.01 86.38 0.52 4.51 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 32 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 33 H 0.11 1.38 7.69 -2.39 -0.02 1.36 16 34 H 0.13 1.20 7.94 -2.39 -0.02 1.18 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 36 H 0.12 1.08 5.93 -2.39 -0.01 1.06 16 37 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.38 20.00 7.80 -92.71 -0.72 19.28 16 42 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.05 2.18 7.01 -2.39 -0.02 2.17 16 Total: -1.00 -74.06 380.19 3.89 -70.17 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.30 Total: 20.33 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 5.29 Total: 2.33 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -4.40 Total: -123.47 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.75 Total: -19.34 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.17 kcal Atomic # 17 Polarization: 0.88 SS G_CDS: -0.08 Total: 0.80 kcal Total: -74.06 3.89 -70.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001041882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.383 kcal (2) G-P(sol) polarization free energy of solvation -74.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds