Wall clock time and date at job start Sat Apr 11 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00156 * 2 1 4 4 H 1.48497 * 109.46949 * 239.99898 * 3 2 1 5 5 H 1.48500 * 109.46660 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47369 * 119.99947 * 3 2 1 7 7 C 1.38817 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99688 * 197.85084 * 7 2 1 9 9 N 1.36933 * 119.99535 * 17.85070 * 7 2 1 10 10 C 1.46843 * 120.38044 * 208.90458 * 9 7 2 11 11 C 1.53356 * 108.81525 * 236.88795 * 10 9 7 12 12 C 1.53184 * 108.76308 * 308.68371 * 11 10 9 13 13 C 1.52850 * 117.66054 * 269.97095 * 12 11 10 14 14 C 1.52819 * 117.71169 * 201.11337 * 12 11 10 15 15 H 1.08999 * 117.50691 * 215.13192 * 14 12 11 16 16 N 1.46504 * 117.49975 * 0.14526 * 14 12 11 17 17 C 1.34777 * 119.99784 * 204.99764 * 16 14 12 18 18 O 1.21688 * 120.00266 * 359.97438 * 17 16 14 19 19 C 1.46720 * 120.00230 * 180.02562 * 17 16 14 20 20 O 1.35341 * 126.64233 * 359.67982 * 19 17 16 21 21 C 1.33663 * 107.68728 * 180.26587 * 20 19 17 22 22 N 1.30612 * 109.15498 * 0.02562 * 21 20 19 23 23 C 1.33699 * 108.99667 * 359.97438 * 22 21 20 24 24 C 1.50695 * 126.27726 * 180.02562 * 23 22 21 25 25 F 1.39898 * 109.47217 * 29.97354 * 24 23 22 26 26 F 1.39902 * 109.47195 * 149.97601 * 24 23 22 27 27 C 1.53181 * 115.07724 * 55.45248 * 12 11 10 28 28 C 1.46841 * 120.38741 * 28.89265 * 9 7 2 29 29 H 0.97001 * 119.99735 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.58028 * 117.08745 * 10 9 7 31 31 H 1.09004 * 109.58299 * 356.68868 * 10 9 7 32 32 H 1.09001 * 109.59100 * 188.90059 * 11 10 9 33 33 H 1.08994 * 109.58727 * 68.47013 * 11 10 9 34 34 H 1.08993 * 117.50109 * 144.82164 * 13 12 11 35 35 H 1.08999 * 117.50215 * 359.76771 * 13 12 11 36 36 H 0.96997 * 120.00005 * 25.00389 * 16 14 12 37 37 H 1.08000 * 125.42224 * 179.97438 * 21 20 19 38 38 H 1.09007 * 109.46566 * 269.97479 * 24 23 22 39 39 H 1.08999 * 109.59299 * 64.33463 * 27 12 11 40 40 H 1.08993 * 109.59027 * 184.77041 * 27 12 11 41 41 H 1.08999 * 109.57390 * 242.92079 * 28 9 7 42 42 H 1.09001 * 109.57970 * 3.31350 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0513 -1.2245 0.2873 9 7 1.3750 -2.3596 -0.3625 10 6 1.8051 -3.6488 0.1937 11 6 2.1667 -4.5900 -0.9617 12 6 1.0058 -4.6121 -1.9609 13 6 -0.0886 -5.6590 -1.7543 14 6 0.9059 -5.8073 -2.9080 15 1 0.5383 -5.6207 -3.9170 16 7 1.9275 -6.8507 -2.7905 17 6 2.2157 -7.6338 -3.8489 18 8 1.6270 -7.4745 -4.9019 19 6 3.2385 -8.6791 -3.7312 20 8 3.9748 -8.9688 -2.6332 21 6 4.7909 -9.9799 -2.9466 22 7 4.5887 -10.3242 -4.1902 23 6 3.6358 -9.5427 -4.7087 24 6 3.0991 -9.6049 -6.1155 25 9 3.1853 -10.9182 -6.5898 26 9 1.7621 -9.1931 -6.1232 27 6 0.5854 -3.2405 -2.4982 28 6 0.2555 -2.3261 -1.3122 29 1 -0.4850 0.8401 -0.0004 30 1 0.9943 -4.0831 0.7787 31 1 2.6777 -3.4994 0.8298 32 1 2.3352 -5.5952 -0.5753 33 1 3.0685 -4.2308 -1.4572 34 1 -1.1107 -5.3747 -2.0042 35 1 0.0175 -6.3376 -0.9079 36 1 2.3965 -6.9780 -1.9510 37 1 5.5045 -10.4386 -2.2783 38 1 3.6855 -8.9475 -6.7574 39 1 1.4021 -2.8085 -3.0765 40 1 -0.2952 -3.3501 -3.1310 41 1 -0.6512 -2.6783 -0.8205 42 1 0.1082 -1.3061 -1.6673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016828513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:24 Heat of formation + Delta-G solvation = -52.989683 kcal Electronic energy + Delta-G solvation = -29762.915141 eV Core-core repulsion = 25189.475462 eV Total energy + Delta-G solvation = -4573.439679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.14145 -47.13280 -44.05248 -40.09843 -38.51655 -35.89770 -35.49784 -33.35787 -31.84707 -31.40526 -30.07455 -28.41115 -27.32620 -24.62254 -24.38966 -22.90390 -22.55381 -21.80704 -21.07806 -20.60381 -19.09257 -18.27367 -18.03502 -17.60936 -17.26238 -17.07008 -16.60489 -16.25275 -15.97927 -15.00755 -14.90056 -14.69943 -14.61697 -14.13291 -13.89647 -13.60314 -13.51598 -13.42225 -13.24008 -13.02750 -12.78360 -12.33118 -12.17390 -11.74918 -11.70211 -11.68841 -11.41837 -11.37031 -11.05173 -10.75527 -10.53944 -10.47753 -10.40102 -10.00286 -9.79390 -9.71361 -9.71155 -9.45821 -8.64494 -8.48571 -6.68922 -5.82778 -3.26203 0.17432 1.74827 1.82842 2.62602 2.75709 2.95606 3.35603 3.41987 3.43066 3.61397 3.87851 4.05245 4.14191 4.46287 4.52856 4.67370 4.80019 4.84978 4.98187 5.01730 5.03352 5.35196 5.37987 5.40698 5.56903 5.69047 5.93092 5.99217 5.99603 6.21779 6.32817 6.36144 6.55037 6.57136 6.62852 6.75093 6.81276 6.90030 7.16268 7.31721 7.62628 7.74622 7.75704 8.42557 9.17815 9.81186 10.37553 11.25011 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022559 B = 0.002360 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.915835 B =11860.640843 C =12277.401437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.150 3.850 11 C -0.099 4.099 12 C -0.093 4.093 13 C -0.178 4.178 14 C 0.064 3.936 15 H 0.138 0.862 16 N -0.677 5.677 17 C 0.597 3.403 18 O -0.490 6.490 19 C -0.053 4.053 20 O -0.181 6.181 21 C 0.209 3.791 22 N -0.468 5.468 23 C -0.014 4.014 24 C 0.355 3.645 25 F -0.190 7.190 26 F -0.162 7.162 27 C -0.106 4.106 28 C 0.173 3.827 29 H 0.255 0.745 30 H 0.019 0.981 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.406 0.594 37 H 0.265 0.735 38 H 0.132 0.868 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.222 -19.800 -6.823 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.023 3.977 11 C -0.138 4.138 12 C -0.094 4.094 13 C -0.217 4.217 14 C -0.041 4.041 15 H 0.156 0.844 16 N -0.326 5.326 17 C 0.380 3.620 18 O -0.365 6.365 19 C -0.110 4.110 20 O -0.067 6.067 21 C -0.017 4.017 22 N -0.195 5.195 23 C -0.139 4.139 24 C 0.300 3.700 25 F -0.171 7.171 26 F -0.143 7.143 27 C -0.145 4.145 28 C 0.047 3.953 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.242 0.758 37 H 0.280 0.720 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.964 -19.996 -7.819 22.571 hybrid contribution 0.423 0.966 1.003 1.455 sum 7.387 -19.030 -6.816 21.522 Atomic orbital electron populations 1.70019 1.05288 1.25707 1.53459 1.25050 0.95247 0.98457 1.00741 0.86389 0.78973 0.83368 0.78148 1.21005 1.21612 1.20885 1.19136 0.92823 0.85036 1.41581 0.91844 1.43966 1.37850 1.01463 1.47839 1.20831 0.97447 0.87057 0.92332 1.21657 0.96204 0.98691 0.97287 1.22006 0.97975 0.91238 0.98197 1.23557 0.96299 1.02451 0.99347 1.22057 0.93046 0.91186 0.97778 0.84434 1.45287 1.39786 1.33657 1.13886 1.16296 0.80763 0.79898 0.85030 1.91015 1.49907 1.68330 1.27290 1.23151 0.99414 1.02675 0.85798 1.84575 1.41131 1.44134 1.36816 1.28488 0.93986 0.86165 0.93058 1.70237 1.15501 1.25399 1.08413 1.22527 0.97730 0.95501 0.98132 1.19354 0.81592 0.80564 0.88453 1.93032 1.96317 1.38806 1.88981 1.93208 1.34743 1.89552 1.96824 1.21899 0.99812 0.92876 0.99955 1.20773 0.88798 0.98733 0.87021 0.93518 0.96265 0.92690 0.93672 0.91666 0.87934 0.88893 0.75823 0.71991 0.85109 0.91999 0.92835 0.96286 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.53 11.23 55.49 0.62 -24.90 16 2 C 0.00 0.11 4.89 -17.43 -0.09 0.02 16 3 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.26 -6.81 9.54 -15.06 -0.14 -6.96 16 8 H 0.06 1.66 7.89 -52.49 -0.41 1.24 16 9 N -0.59 -14.11 2.94 -172.25 -0.51 -14.62 16 10 C 0.15 2.95 6.51 -3.67 -0.02 2.92 16 11 C -0.10 -1.55 5.37 -26.45 -0.14 -1.69 16 12 C -0.09 -1.43 1.94 -154.49 -0.30 -1.73 16 13 C -0.18 -2.40 9.87 -26.79 -0.26 -2.67 16 14 C 0.06 0.87 6.14 -68.00 -0.42 0.45 16 15 H 0.14 1.97 7.40 -51.93 -0.38 1.58 16 16 N -0.68 -8.10 5.34 -55.17 -0.29 -8.39 16 17 C 0.60 7.63 7.73 -12.83 -0.10 7.53 16 18 O -0.49 -7.45 12.71 5.20 0.07 -7.39 16 19 C -0.05 -0.58 7.14 -36.84 -0.26 -0.85 16 20 O -0.18 -1.55 10.57 4.43 0.05 -1.50 16 21 C 0.21 1.34 13.21 52.24 0.69 2.03 16 22 N -0.47 -4.62 11.21 -10.89 -0.12 -4.74 16 23 C -0.01 -0.15 6.78 -82.46 -0.56 -0.71 16 24 C 0.36 3.79 5.62 36.00 0.20 3.99 16 25 F -0.19 -2.21 17.29 2.25 0.04 -2.17 16 26 F -0.16 -2.16 13.50 2.25 0.03 -2.13 16 27 C -0.11 -1.91 5.83 -26.46 -0.15 -2.07 16 28 C 0.17 3.93 5.40 -3.68 -0.02 3.91 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 32 H 0.04 0.57 6.75 -51.93 -0.35 0.22 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.41 4.20 6.91 -40.82 -0.28 3.91 16 37 H 0.26 0.17 8.06 -52.49 -0.42 -0.25 16 38 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 2.35 5.93 -51.93 -0.31 2.04 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -32.42 355.94 -6.45 -38.87 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.09 Total: 1.25 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.58 Total: 4.17 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.30 Total: -52.65 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.11 Total: -8.88 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.07 Total: -4.30 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.42 -6.45 -38.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016828513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.121 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds