Wall clock time and date at job start Sat Apr 11 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86797 * 120.00150 * 2 1 4 4 H 1.48504 * 109.47081 * 270.00127 * 3 2 1 5 5 H 1.48503 * 109.46962 * 29.99951 * 3 2 1 6 6 H 1.48506 * 109.47367 * 149.99887 * 3 2 1 7 7 C 1.38820 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99890 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99969 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99526 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.06114 * 324.58154 * 10 9 7 12 12 C 1.55900 * 110.71887 * 202.70593 * 10 9 7 13 13 C 1.54108 * 106.85596 * 241.84885 * 12 10 9 14 14 C 1.54447 * 104.73727 * 336.36941 * 13 12 10 15 15 H 1.08998 * 114.49414 * 271.97458 * 14 13 12 16 16 C 1.54656 * 108.64538 * 143.53489 * 14 13 12 17 17 N 1.47351 * 105.21867 * 288.60134 * 16 14 13 18 18 C 1.34780 * 125.70191 * 155.13411 * 17 16 14 19 19 O 1.21685 * 120.00037 * 179.97438 * 18 17 16 20 20 C 1.46725 * 120.00076 * 359.96852 * 18 17 16 21 21 O 1.35338 * 126.63984 * 0.02884 * 20 18 17 22 22 C 1.33664 * 107.68353 * 179.97438 * 21 20 18 23 23 N 1.30615 * 109.15419 * 0.02562 * 22 21 20 24 24 C 1.33692 * 108.99582 * 359.76251 * 23 22 21 25 25 C 1.50692 * 126.27751 * 180.26019 * 24 23 22 26 26 F 1.39896 * 109.47294 * 30.13521 * 25 24 23 27 27 F 1.39902 * 109.47656 * 150.13954 * 25 24 23 28 28 C 1.47037 * 108.59715 * 335.10813 * 17 16 14 29 29 C 1.53909 * 109.91444 * 85.77777 * 10 9 7 30 30 H 1.09004 * 112.92155 * 265.08299 * 29 10 9 31 31 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00255 * 359.97438 * 9 7 2 33 33 H 1.09003 * 110.11136 * 122.38850 * 12 10 9 34 34 H 1.08995 * 109.77878 * 1.12856 * 12 10 9 35 35 H 1.09000 * 110.38354 * 217.55123 * 13 12 10 36 36 H 1.09008 * 110.48057 * 95.23645 * 13 12 10 37 37 H 1.09002 * 110.31077 * 169.63233 * 16 14 13 38 38 H 1.09000 * 110.30543 * 47.56230 * 16 14 13 39 39 H 1.08011 * 125.42417 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.46995 * 270.13890 * 25 24 23 41 41 H 1.09001 * 109.82320 * 121.80836 * 28 17 16 42 42 H 1.09003 * 109.82791 * 242.68591 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5762 -3.2120 0.5930 12 6 5.5526 -2.2762 0.5635 13 6 6.5294 -2.6463 -0.5696 14 6 5.7232 -3.5872 -1.4917 15 1 5.7723 -4.6407 -1.2165 16 6 6.1252 -3.3058 -2.9583 17 7 5.5392 -1.9913 -3.2746 18 6 5.9862 -1.1370 -4.2163 19 8 5.4205 -0.0739 -4.3912 20 6 7.1550 -1.4887 -5.0306 21 8 7.8816 -2.6277 -4.9510 22 6 8.8550 -2.5529 -5.8640 23 7 8.7586 -1.4168 -6.5012 24 6 7.7164 -0.7335 -6.0172 25 6 7.2492 0.6236 -6.4763 26 9 7.5523 0.7871 -7.8322 27 9 5.8663 0.7279 -6.2918 28 6 4.3850 -1.7677 -2.3916 29 6 4.2824 -2.9779 -1.4432 30 1 3.5078 -3.6855 -1.7388 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3622 0.0004 33 1 5.7111 -2.9299 1.4212 34 1 5.6969 -1.2361 0.8556 35 1 7.3998 -3.1639 -0.1664 36 1 6.8379 -1.7537 -1.1140 37 1 5.7146 -4.0714 -3.6167 38 1 7.2104 -3.2689 -3.0527 39 1 9.6028 -3.3109 -6.0454 40 1 7.7526 1.3967 -5.8958 41 1 4.5334 -0.8560 -1.8130 42 1 3.4752 -1.6842 -2.9862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026360821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:30 Heat of formation + Delta-G solvation = -70.292637 kcal Electronic energy + Delta-G solvation = -31061.225358 eV Core-core repulsion = 26487.035366 eV Total energy + Delta-G solvation = -4574.189992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.99819 -46.98550 -43.93906 -40.50007 -38.51960 -35.81733 -35.12425 -33.39713 -31.63256 -31.23514 -29.51087 -28.81899 -27.20578 -25.72124 -24.59537 -23.22823 -22.71142 -22.07239 -20.28920 -20.06713 -18.96626 -18.23460 -17.93686 -17.78682 -17.31511 -17.09846 -16.98533 -15.99254 -15.95769 -15.68472 -14.91782 -14.78668 -14.56975 -14.07809 -13.78970 -13.63151 -13.58955 -13.34628 -13.11560 -12.83835 -12.69277 -12.53523 -12.34724 -12.04646 -11.97571 -11.58055 -11.34558 -11.17065 -10.91467 -10.83508 -10.69590 -10.54686 -10.48341 -10.32167 -10.16917 -9.98889 -9.61133 -9.59386 -8.95309 -8.57839 -7.32649 -5.81097 -3.18165 0.32838 1.85980 1.95382 2.85897 2.88220 3.08771 3.37220 3.41694 3.48529 3.73474 4.00141 4.15205 4.38719 4.57090 4.60675 4.67511 4.71778 4.86563 4.93220 5.11340 5.25601 5.32083 5.37257 5.38865 5.43387 5.53186 5.55423 5.72860 5.75377 5.85567 5.93111 6.03424 6.08082 6.24142 6.36773 6.47292 6.53505 6.60268 6.75264 6.94688 7.38164 7.90841 7.94011 8.37886 9.14855 9.87754 10.05270 11.36780 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012965 B = 0.004006 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.134383 B = 6987.031448 C = 8576.919114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.012 3.988 3 Si 0.876 3.124 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.187 3.813 11 H 0.064 0.936 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.104 4.104 15 H 0.106 0.894 16 C 0.101 3.899 17 N -0.600 5.600 18 C 0.599 3.401 19 O -0.486 6.486 20 C -0.041 4.041 21 O -0.178 6.178 22 C 0.197 3.803 23 N -0.467 5.467 24 C -0.020 4.020 25 C 0.355 3.645 26 F -0.191 7.191 27 F -0.161 7.161 28 C 0.128 3.872 29 C -0.116 4.116 30 H 0.089 0.911 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.262 0.738 40 H 0.130 0.870 41 H 0.085 0.915 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.256 -8.816 -8.524 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.184 4.184 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.384 5.384 10 C 0.076 3.924 11 H 0.082 0.918 12 C -0.171 4.171 13 C -0.151 4.151 14 C -0.123 4.123 15 H 0.124 0.876 16 C -0.022 4.022 17 N -0.333 5.333 18 C 0.384 3.616 19 O -0.362 6.362 20 C -0.099 4.099 21 O -0.064 6.064 22 C -0.028 4.028 23 N -0.194 5.194 24 C -0.144 4.144 25 C 0.300 3.700 26 F -0.172 7.172 27 F -0.141 7.141 28 C 0.008 3.992 29 C -0.138 4.138 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.196 0.804 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.278 0.722 40 H 0.147 0.853 41 H 0.103 0.897 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.040 -8.057 -9.106 24.300 hybrid contribution 0.256 0.757 0.233 0.832 sum 21.296 -7.300 -8.872 24.198 Atomic orbital electron populations 1.69684 1.05142 1.25960 1.56873 1.24640 0.95142 0.97116 1.01513 0.86684 0.79176 0.85269 0.78243 1.20531 1.21674 1.20423 1.19030 0.80384 0.94694 1.43903 0.89062 1.42951 1.04178 1.01781 1.89518 1.21046 0.90474 0.89268 0.91580 0.91754 1.22775 0.95119 1.01649 0.97516 1.22215 0.97525 0.98693 0.96707 1.23253 0.96402 0.99879 0.92792 0.87626 1.22423 0.98434 0.84457 0.96880 1.48511 1.31644 1.18258 1.34894 1.15983 0.81481 0.84365 0.79806 1.91063 1.56068 1.22121 1.66938 1.23235 0.97680 0.86450 1.02504 1.84679 1.35356 1.36827 1.49517 1.28438 0.91791 0.96880 0.85725 1.70210 1.17796 1.04932 1.26486 1.22488 0.95543 0.99411 0.97003 1.19339 0.79547 0.91739 0.79382 1.93023 1.93048 1.96249 1.34923 1.93230 1.29735 1.96575 1.94607 1.22064 0.86429 1.00068 0.90671 1.23634 0.95223 0.95778 0.99160 0.89228 0.92953 0.80448 0.91560 0.91720 0.91952 0.91900 0.91284 0.90395 0.72247 0.85278 0.89666 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 2 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 3 Si 0.88 22.09 27.74 -169.99 -4.71 17.37 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16 7 C -0.25 -6.69 10.44 -15.06 -0.16 -6.85 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.74 -16.25 3.41 -51.47 -0.18 -16.43 16 10 C 0.19 3.17 3.34 -65.91 -0.22 2.95 16 11 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 12 C -0.13 -1.81 6.64 -24.60 -0.16 -1.97 16 13 C -0.11 -1.30 5.85 -25.39 -0.15 -1.44 16 14 C -0.10 -1.13 4.29 -87.10 -0.37 -1.51 16 15 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 16 C 0.10 1.10 5.44 -2.71 -0.01 1.08 16 17 N -0.60 -8.83 2.84 -172.39 -0.49 -9.32 16 18 C 0.60 9.50 7.77 -12.83 -0.10 9.40 16 19 O -0.49 -9.36 13.47 5.20 0.07 -9.29 16 20 C -0.04 -0.54 6.92 -36.84 -0.26 -0.79 16 21 O -0.18 -1.71 8.05 4.44 0.04 -1.67 16 22 C 0.20 1.44 13.21 52.24 0.69 2.13 16 23 N -0.47 -5.16 11.21 -10.89 -0.12 -5.28 16 24 C -0.02 -0.25 6.78 -82.47 -0.56 -0.81 16 25 C 0.35 4.54 5.62 36.00 0.20 4.74 16 26 F -0.19 -2.56 17.29 2.25 0.04 -2.52 16 27 F -0.16 -2.61 13.49 2.25 0.03 -2.58 16 28 C 0.13 2.22 5.39 -3.18 -0.02 2.20 16 29 C -0.12 -1.73 3.92 -87.69 -0.34 -2.07 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.36 8.05 4.74 -40.82 -0.19 7.86 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.97 7.68 -51.93 -0.40 0.57 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.81 7.30 -51.92 -0.38 0.43 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.74 6.15 -51.93 -0.32 0.42 16 39 H 0.26 0.34 8.06 -52.48 -0.42 -0.08 16 40 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.68 6.16 -51.93 -0.32 1.36 16 42 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -34.39 344.86 -5.91 -40.31 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.00 Total: 4.86 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -1.56 Total: 7.32 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.01 Total: -58.99 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.11 Total: -10.96 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.07 Total: -5.11 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.39 -5.91 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026360821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.987 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds