Wall clock time and date at job start Sat Apr 11 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86797 * 120.00150 * 2 1 4 4 H 1.48504 * 109.47081 * 270.00127 * 3 2 1 5 5 H 1.48503 * 109.46962 * 29.99951 * 3 2 1 6 6 H 1.48506 * 109.47367 * 149.99887 * 3 2 1 7 7 C 1.38820 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99890 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99969 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99526 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.06114 * 324.58154 * 10 9 7 12 12 C 1.55900 * 110.71887 * 202.70593 * 10 9 7 13 13 C 1.54108 * 106.85596 * 241.84885 * 12 10 9 14 14 C 1.54447 * 104.73727 * 336.36941 * 13 12 10 15 15 H 1.08998 * 114.49414 * 271.97458 * 14 13 12 16 16 C 1.54656 * 108.64538 * 143.53489 * 14 13 12 17 17 N 1.47351 * 105.21867 * 288.60134 * 16 14 13 18 18 C 1.34780 * 125.70191 * 155.13411 * 17 16 14 19 19 O 1.21685 * 120.00037 * 179.97438 * 18 17 16 20 20 C 1.46725 * 120.00076 * 359.96852 * 18 17 16 21 21 O 1.35338 * 126.63984 * 0.02884 * 20 18 17 22 22 C 1.33664 * 107.68353 * 179.97438 * 21 20 18 23 23 N 1.30615 * 109.15419 * 0.02562 * 22 21 20 24 24 C 1.33692 * 108.99582 * 359.76251 * 23 22 21 25 25 C 1.50692 * 126.27751 * 180.26019 * 24 23 22 26 26 F 1.39896 * 109.47294 * 30.13521 * 25 24 23 27 27 F 1.39902 * 109.47656 * 150.13954 * 25 24 23 28 28 C 1.47037 * 108.59715 * 335.10813 * 17 16 14 29 29 C 1.53909 * 109.91444 * 85.77777 * 10 9 7 30 30 H 1.09004 * 112.92155 * 265.08299 * 29 10 9 31 31 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00255 * 359.97438 * 9 7 2 33 33 H 1.09003 * 110.11136 * 122.38850 * 12 10 9 34 34 H 1.08995 * 109.77878 * 1.12856 * 12 10 9 35 35 H 1.09000 * 110.38354 * 217.55123 * 13 12 10 36 36 H 1.09008 * 110.48057 * 95.23645 * 13 12 10 37 37 H 1.09002 * 110.31077 * 169.63233 * 16 14 13 38 38 H 1.09000 * 110.30543 * 47.56230 * 16 14 13 39 39 H 1.08011 * 125.42417 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.46995 * 270.13890 * 25 24 23 41 41 H 1.09001 * 109.82320 * 121.80836 * 28 17 16 42 42 H 1.09003 * 109.82791 * 242.68591 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5762 -3.2120 0.5930 12 6 5.5526 -2.2762 0.5635 13 6 6.5294 -2.6463 -0.5696 14 6 5.7232 -3.5872 -1.4917 15 1 5.7723 -4.6407 -1.2165 16 6 6.1252 -3.3058 -2.9583 17 7 5.5392 -1.9913 -3.2746 18 6 5.9862 -1.1370 -4.2163 19 8 5.4205 -0.0739 -4.3912 20 6 7.1550 -1.4887 -5.0306 21 8 7.8816 -2.6277 -4.9510 22 6 8.8550 -2.5529 -5.8640 23 7 8.7586 -1.4168 -6.5012 24 6 7.7164 -0.7335 -6.0172 25 6 7.2492 0.6236 -6.4763 26 9 7.5523 0.7871 -7.8322 27 9 5.8663 0.7279 -6.2918 28 6 4.3850 -1.7677 -2.3916 29 6 4.2824 -2.9779 -1.4432 30 1 3.5078 -3.6855 -1.7388 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3622 0.0004 33 1 5.7111 -2.9299 1.4212 34 1 5.6969 -1.2361 0.8556 35 1 7.3998 -3.1639 -0.1664 36 1 6.8379 -1.7537 -1.1140 37 1 5.7146 -4.0714 -3.6167 38 1 7.2104 -3.2689 -3.0527 39 1 9.6028 -3.3109 -6.0454 40 1 7.7526 1.3967 -5.8958 41 1 4.5334 -0.8560 -1.8130 42 1 3.4752 -1.6842 -2.9862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026360821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:30 Heat of formation + Delta-G solvation = -96.231428 kcal Electronic energy + Delta-G solvation = -31062.350148 eV Core-core repulsion = 26487.035366 eV Total energy + Delta-G solvation = -4575.314782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.05923 -48.07277 -44.72565 -41.65998 -39.74723 -36.93417 -36.30842 -34.95997 -33.08787 -32.54843 -30.65452 -30.15504 -28.21579 -27.05103 -25.62383 -24.62369 -23.99838 -22.99485 -21.35811 -21.12598 -20.31287 -19.73508 -19.15385 -18.85587 -18.33262 -18.14544 -17.91024 -17.22561 -16.99257 -16.66767 -16.55862 -16.04651 -15.72569 -15.40047 -14.95208 -14.86528 -14.75088 -14.63608 -14.47612 -14.19963 -13.96508 -13.93407 -13.60018 -13.36611 -13.07568 -12.91529 -12.51286 -12.44897 -12.31520 -12.19590 -12.04472 -11.87100 -11.69836 -11.59197 -11.49191 -11.44503 -11.34402 -10.94506 -10.49698 -9.77293 -9.28648 -8.04036 -5.34970 -0.56677 1.06504 1.14546 1.30663 1.37431 1.40484 1.73922 1.83523 2.28984 2.44777 2.91028 3.10529 3.24860 3.27676 3.35189 3.53228 3.70632 3.70849 3.92115 3.98839 4.04728 4.21808 4.25594 4.29440 4.36728 4.41145 4.60207 4.67741 4.72171 4.75583 4.92510 4.98101 5.00648 5.09988 5.18993 5.24280 5.34786 5.45225 5.52427 5.79585 6.13883 6.21658 6.30655 6.74737 7.07672 7.85693 8.00249 9.17640 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012965 B = 0.004006 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.134383 B = 6987.031448 C = 8576.919114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.056 4.056 3 Si 0.935 3.065 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.252 1.252 7 C -0.218 4.218 8 H 0.066 0.934 9 N -0.747 5.747 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.125 4.125 13 C -0.107 4.107 14 C -0.082 4.082 15 H 0.146 0.854 16 C 0.099 3.901 17 N -0.600 5.600 18 C 0.594 3.406 19 O -0.536 6.536 20 C -0.062 4.062 21 O -0.170 6.170 22 C 0.241 3.759 23 N -0.501 5.501 24 C -0.018 4.018 25 C 0.344 3.656 26 F -0.197 7.197 27 F -0.185 7.185 28 C 0.135 3.865 29 C -0.115 4.115 30 H 0.086 0.914 31 H 0.255 0.745 32 H 0.360 0.640 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.323 0.677 40 H 0.158 0.842 41 H 0.057 0.943 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.973 -11.600 -8.502 29.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.248 4.248 3 Si 0.764 3.236 4 H -0.221 1.221 5 H -0.222 1.222 6 H -0.176 1.176 7 C -0.349 4.349 8 H 0.084 0.916 9 N -0.389 5.389 10 C 0.065 3.935 11 H 0.078 0.922 12 C -0.163 4.163 13 C -0.145 4.145 14 C -0.101 4.101 15 H 0.164 0.836 16 C -0.022 4.022 17 N -0.332 5.332 18 C 0.381 3.619 19 O -0.415 6.415 20 C -0.119 4.119 21 O -0.056 6.056 22 C 0.016 3.984 23 N -0.228 5.228 24 C -0.142 4.142 25 C 0.289 3.711 26 F -0.178 7.178 27 F -0.166 7.166 28 C 0.013 3.987 29 C -0.137 4.137 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.194 0.806 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.338 0.662 40 H 0.175 0.825 41 H 0.075 0.925 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 25.848 -10.906 -9.077 29.486 hybrid contribution -1.096 1.444 0.142 1.819 sum 24.751 -9.462 -8.935 27.964 Atomic orbital electron populations 1.69835 1.06849 1.26282 1.60265 1.25288 0.95809 1.00370 1.03308 0.85702 0.79050 0.81395 0.77409 1.22076 1.22165 1.17630 1.19036 0.82557 0.93303 1.39980 0.91605 1.43006 1.02508 1.03885 1.89529 1.21414 0.92242 0.86851 0.93029 0.92206 1.22715 0.92925 1.01467 0.99190 1.22208 0.98128 0.98536 0.95597 1.23340 0.92258 1.01619 0.92842 0.83646 1.22700 0.99878 0.82600 0.97023 1.48540 1.30825 1.19647 1.34178 1.16345 0.81982 0.83828 0.79763 1.91029 1.57903 1.24180 1.68406 1.22401 0.98099 0.88164 1.03244 1.84663 1.35562 1.35221 1.50197 1.29869 0.90119 0.96089 0.82277 1.70269 1.17901 1.06562 1.28060 1.22454 0.95899 0.99154 0.96718 1.19768 0.78477 0.93419 0.79397 1.93001 1.92939 1.96374 1.35478 1.93179 1.31898 1.96797 1.94745 1.21726 0.86107 1.00209 0.90667 1.23490 0.98551 0.94992 0.96648 0.89596 0.93557 0.80607 0.89066 0.93242 0.88132 0.93522 0.89688 0.87777 0.66243 0.82468 0.92497 0.94941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.58 13.97 21.65 0.30 -63.28 16 2 C -0.06 -3.33 5.50 84.87 0.47 -2.87 16 3 Si 0.94 47.55 27.74 68.60 1.90 49.45 16 4 H -0.29 -15.48 7.11 99.48 0.71 -14.77 16 5 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 6 H -0.25 -11.50 6.52 99.48 0.65 -10.85 16 7 C -0.22 -12.04 10.44 84.04 0.88 -11.17 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 N -0.75 -33.24 3.41 -316.75 -1.08 -34.32 16 10 C 0.17 5.71 3.34 46.30 0.15 5.87 16 11 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 12 C -0.12 -3.06 6.64 31.97 0.21 -2.85 16 13 C -0.11 -1.98 5.85 31.46 0.18 -1.80 16 14 C -0.08 -1.43 4.29 -8.52 -0.04 -1.47 16 15 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 16 C 0.10 1.78 5.44 86.78 0.47 2.26 16 17 N -0.60 -17.26 2.84 -817.54 -2.32 -19.58 16 18 C 0.59 18.94 7.77 86.46 0.67 19.62 16 19 O -0.54 -21.75 13.47 -4.30 -0.06 -21.81 16 20 C -0.06 -1.49 6.92 24.05 0.17 -1.32 16 21 O -0.17 -2.52 8.05 -7.02 -0.06 -2.58 16 22 C 0.24 2.25 13.21 130.42 1.72 3.97 16 23 N -0.50 -9.47 11.21 -303.13 -3.40 -12.87 16 24 C -0.02 -0.43 6.78 41.83 0.28 -0.15 16 25 C 0.34 8.81 5.62 71.23 0.40 9.21 16 26 F -0.20 -5.25 17.29 44.97 0.78 -4.47 16 27 F -0.19 -6.32 13.49 44.97 0.61 -5.71 16 28 C 0.14 4.82 5.39 86.65 0.47 5.29 16 29 C -0.12 -3.31 3.92 -8.89 -0.03 -3.35 16 30 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 31 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 32 H 0.36 16.21 4.74 -92.71 -0.44 15.77 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.38 7.68 -2.39 -0.02 1.37 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.05 1.05 7.30 -2.38 -0.02 1.03 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.41 6.15 -2.39 -0.01 1.39 16 39 H 0.32 -1.62 8.06 -2.91 -0.02 -1.65 16 40 H 0.16 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.06 2.34 6.16 -2.39 -0.01 2.33 16 42 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -83.14 344.86 3.27 -79.87 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.58 Total: 14.03 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 6.01 Total: 21.25 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -6.50 Total: -130.04 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.11 Total: -24.38 kcal Atomic # 9 Polarization: -11.56 SS G_CDS: 1.38 Total: -10.18 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.90 Total: 49.45 kcal Total: -83.14 3.27 -79.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026360821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.358 kcal (2) G-P(sol) polarization free energy of solvation -83.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds