Wall clock time and date at job start Sat Apr 11 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00234 * 2 1 4 4 H 1.48499 * 109.46934 * 270.00002 * 3 2 1 5 5 H 1.48503 * 109.46858 * 29.99831 * 3 2 1 6 6 H 1.48494 * 109.47295 * 149.99731 * 3 2 1 7 7 C 1.38815 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00099 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.47664 * 134.45912 * 179.97438 * 9 7 2 11 11 C 1.53508 * 85.97836 * 204.31488 * 10 9 7 12 12 C 1.47667 * 134.45667 * 0.02562 * 9 7 2 13 13 C 1.52674 * 113.57032 * 91.02100 * 11 10 9 14 14 C 1.53337 * 109.11104 * 73.80047 * 13 11 10 15 15 N 1.46879 * 108.76056 * 52.41275 * 14 13 11 16 16 C 1.34783 * 120.47017 * 124.48612 * 15 14 13 17 17 O 1.21684 * 119.99906 * 174.32473 * 16 15 14 18 18 C 1.46720 * 119.99781 * 354.31727 * 16 15 14 19 19 O 1.35337 * 126.64425 * 6.11234 * 18 16 15 20 20 C 1.33671 * 107.68547 * 179.97438 * 19 18 16 21 21 N 1.30618 * 109.14920 * 0.02562 * 20 19 18 22 22 C 1.33687 * 109.00036 * 359.76275 * 21 20 19 23 23 C 1.50695 * 126.27628 * 180.25479 * 22 21 20 24 24 F 1.39900 * 109.47300 * 120.13948 * 23 22 21 25 25 F 1.39899 * 109.47226 * 240.13902 * 23 22 21 26 26 C 1.46888 * 119.06366 * 304.46026 * 15 14 13 27 27 C 1.52677 * 113.56121 * 222.22711 * 11 10 9 28 28 H 0.96995 * 120.00099 * 359.97438 * 1 2 3 29 29 H 1.09003 * 113.78983 * 90.05005 * 10 9 7 30 30 H 1.09004 * 113.79272 * 318.58375 * 10 9 7 31 31 H 1.09000 * 113.79112 * 41.40787 * 12 9 7 32 32 H 1.09004 * 113.79398 * 269.95063 * 12 9 7 33 33 H 1.09003 * 109.53009 * 193.69410 * 13 11 10 34 34 H 1.09002 * 109.53012 * 313.91643 * 13 11 10 35 35 H 1.09004 * 109.58603 * 172.18727 * 14 13 11 36 36 H 1.08991 * 109.59363 * 292.62520 * 14 13 11 37 37 H 1.08005 * 125.42192 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.47259 * 0.14154 * 23 22 21 39 39 H 1.09004 * 109.59289 * 295.76409 * 26 15 14 40 40 H 1.09003 * 109.59334 * 175.33178 * 26 15 14 41 41 H 1.08999 * 109.53051 * 46.09620 * 27 11 10 42 42 H 1.09005 * 109.52916 * 166.24210 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 1.7213 -3.8107 0.0019 11 6 0.3475 -4.0812 -0.6274 12 6 -0.1043 -2.7567 0.0019 13 6 0.3603 -4.0593 -2.1539 14 6 1.0370 -5.3354 -2.6686 15 7 0.3915 -6.4974 -2.0436 16 6 -0.1308 -7.4802 -2.8040 17 8 -0.5707 -8.4863 -2.2798 18 6 -0.1690 -7.3367 -4.2636 19 8 0.3811 -6.3371 -4.9917 20 6 0.1203 -6.5819 -6.2796 21 7 -0.5669 -7.6886 -6.3748 22 6 -0.7613 -8.1870 -5.1496 23 6 -1.5015 -9.4549 -4.8099 24 9 -0.6392 -10.3351 -4.1475 25 9 -2.5871 -9.1533 -3.9807 26 6 0.3236 -6.5735 -0.5783 27 6 -0.3580 -5.3058 -0.0498 28 1 -0.4850 0.8400 0.0004 29 1 1.8390 -4.2341 0.9994 30 1 2.5592 -4.0343 -0.6584 31 1 -0.7168 -2.1427 -0.6583 32 1 -0.5299 -2.8665 0.9994 33 1 -0.6631 -4.0139 -2.5263 34 1 0.9147 -3.1875 -2.5013 35 1 0.9280 -5.3955 -3.7515 36 1 2.0946 -5.3198 -2.4059 37 1 0.4287 -5.9631 -7.1094 38 1 -1.8629 -9.9213 -5.7264 39 1 1.3313 -6.6444 -0.1689 40 1 -0.2550 -7.4493 -0.2842 41 1 -0.2938 -5.2840 1.0381 42 1 -1.4049 -5.3001 -0.3532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035794894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:06 Heat of formation + Delta-G solvation = -31.112579 kcal Electronic energy + Delta-G solvation = -30799.042635 eV Core-core repulsion = 26226.551618 eV Total energy + Delta-G solvation = -4572.491017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -49.07522 -47.08036 -43.99515 -40.35215 -38.78613 -36.26597 -35.41144 -32.65424 -31.86227 -30.84580 -30.43016 -27.63491 -26.71962 -25.13544 -24.50927 -23.58765 -23.21262 -22.27979 -21.27143 -20.36784 -18.45962 -17.94485 -17.67683 -17.42538 -16.98251 -16.81957 -16.75159 -16.25852 -15.96059 -15.09468 -14.94016 -14.74070 -14.65662 -13.98805 -13.94973 -13.80557 -13.67204 -13.41592 -13.19436 -12.97352 -12.62010 -12.29164 -12.19505 -12.04674 -11.78398 -11.64137 -11.36265 -11.11595 -11.03848 -10.92695 -10.88756 -10.49877 -10.35848 -10.13440 -9.76991 -9.66981 -9.59411 -9.39940 -8.82356 -8.61333 -6.89331 -5.79256 -3.11234 0.29943 1.84843 1.89661 2.72022 2.85534 3.00927 3.35657 3.41126 3.42973 3.80834 3.96561 4.05081 4.42706 4.52055 4.79239 4.79976 4.96710 4.99076 5.01504 5.10778 5.23738 5.30490 5.39401 5.41197 5.55177 5.68623 5.78633 5.85270 5.96071 6.05405 6.20726 6.27533 6.37998 6.50886 6.55202 6.72838 6.75311 6.90547 7.18080 7.20510 7.33107 7.54915 7.78441 7.95974 9.02417 9.68635 10.58687 11.37584 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021350 B = 0.002874 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.134712 B = 9741.099455 C =10434.505109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.127 3.873 11 C -0.111 4.111 12 C 0.174 3.826 13 C -0.094 4.094 14 C 0.090 3.910 15 N -0.588 5.588 16 C 0.592 3.408 17 O -0.502 6.502 18 C -0.039 4.039 19 O -0.170 6.170 20 C 0.199 3.801 21 N -0.472 5.472 22 C -0.022 4.022 23 C 0.362 3.638 24 F -0.181 7.181 25 F -0.183 7.183 26 C 0.116 3.884 27 C -0.118 4.118 28 H 0.253 0.747 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.026 0.974 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.262 0.738 38 H 0.131 0.869 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 -16.446 -12.017 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.001 3.999 11 C -0.113 4.113 12 C 0.049 3.951 13 C -0.133 4.133 14 C -0.032 4.032 15 N -0.320 5.320 16 C 0.377 3.623 17 O -0.378 6.378 18 C -0.096 4.096 19 O -0.056 6.056 20 C -0.026 4.026 21 N -0.199 5.199 22 C -0.147 4.147 23 C 0.307 3.693 24 F -0.162 7.162 25 F -0.164 7.164 26 C -0.005 4.005 27 C -0.157 4.157 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.278 0.722 38 H 0.148 0.852 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.357 -16.830 -12.213 20.839 hybrid contribution 0.814 1.595 0.664 1.910 sum -0.542 -15.234 -11.550 19.125 Atomic orbital electron populations 1.69812 1.04972 1.25274 1.56710 1.24758 0.95625 0.97418 1.02580 0.86163 0.78620 0.83642 0.77583 1.21578 1.21691 1.20761 1.19006 0.90205 0.82090 1.43720 0.90417 1.45966 1.02314 0.99149 1.86057 1.22592 0.94190 0.86657 0.96507 1.22408 0.98193 0.95822 0.94848 1.22216 0.88086 0.88182 0.96653 1.21478 1.00788 0.96401 0.94587 1.22483 0.97376 0.84986 0.98317 1.48035 1.55681 1.20639 1.07615 1.16549 0.79605 0.84117 0.82004 1.90948 1.47771 1.28315 1.70783 1.23338 1.02409 0.89743 0.94108 1.84819 1.59357 1.42070 1.19401 1.28581 0.94602 0.94257 0.85199 1.70163 1.16509 1.09798 1.23461 1.22384 1.03615 0.99652 0.89004 1.19177 0.77293 0.83396 0.89392 1.93070 1.70953 1.68836 1.83383 1.93067 1.54453 1.93780 1.75145 1.21777 1.01883 0.99770 0.77068 1.21851 0.99666 0.93469 1.00725 0.93688 0.95011 0.94205 0.90976 0.95637 0.92069 0.89108 0.88184 0.90417 0.72223 0.85229 0.90768 0.88965 0.90289 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 11.39 55.49 0.63 -26.00 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.22 -6.03 10.70 -15.06 -0.16 -6.19 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.61 -14.81 3.53 -179.81 -0.64 -15.45 16 10 C 0.13 2.40 7.72 -3.15 -0.02 2.38 16 11 C -0.11 -1.90 0.77 -154.45 -0.12 -2.02 16 12 C 0.17 3.89 6.64 -3.19 -0.02 3.87 16 13 C -0.09 -1.47 5.21 -26.72 -0.14 -1.61 16 14 C 0.09 1.15 6.21 -3.66 -0.02 1.12 16 15 N -0.59 -7.96 2.94 -174.19 -0.51 -8.47 16 16 C 0.59 8.57 7.65 -12.83 -0.10 8.47 16 17 O -0.50 -8.34 13.38 5.20 0.07 -8.27 16 18 C -0.04 -0.49 6.89 -36.84 -0.25 -0.75 16 19 O -0.17 -1.72 7.25 4.43 0.03 -1.69 16 20 C 0.20 1.49 13.21 52.25 0.69 2.18 16 21 N -0.47 -4.81 11.26 -10.88 -0.12 -4.94 16 22 C -0.02 -0.26 6.59 -82.47 -0.54 -0.81 16 23 C 0.36 4.11 5.10 36.00 0.18 4.30 16 24 F -0.18 -2.40 16.02 2.25 0.04 -2.37 16 25 F -0.18 -2.47 16.40 2.25 0.04 -2.44 16 26 C 0.12 1.52 6.30 -3.66 -0.02 1.50 16 27 C -0.12 -1.69 5.26 -26.72 -0.14 -1.83 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.03 0.59 8.07 -51.93 -0.42 0.18 16 30 H 0.04 0.72 7.41 -51.93 -0.38 0.33 16 31 H 0.07 1.80 7.12 -51.93 -0.37 1.43 16 32 H 0.03 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.61 8.01 -51.93 -0.42 1.19 16 35 H 0.10 1.16 3.71 -55.35 -0.21 0.95 16 36 H 0.08 0.97 7.49 -51.93 -0.39 0.58 16 37 H 0.26 0.49 8.06 -52.48 -0.42 0.07 16 38 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 41 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -33.62 348.53 -6.05 -39.67 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -5.05 Total: -2.26 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -0.77 Total: 10.31 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.64 Total: -54.85 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.10 Total: -9.95 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.07 Total: -4.80 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.62 -6.05 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035794894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.553 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds