Wall clock time and date at job start Sat Apr 11 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30209 * 126.78424 * 2 1 4 4 O 1.20923 * 111.64458 * 179.97438 * 3 2 1 5 5 C 1.34061 * 111.55027 * 0.02562 * 4 3 2 6 6 Cl 1.73600 * 126.79765 * 179.97438 * 5 4 3 7 7 C 1.35676 * 106.40782 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.01051 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.47142 * 89.97627 * 8 7 5 10 10 O 1.21290 * 120.00005 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00230 * 179.97438 * 9 8 7 12 12 C 1.46922 * 120.62695 * 359.72230 * 11 9 8 13 13 C 1.53625 * 108.54427 * 126.36590 * 12 11 9 14 14 C 1.53040 * 109.24150 * 54.85454 * 13 12 11 15 15 H 1.08998 * 109.45099 * 178.50220 * 14 13 12 16 16 N 1.46495 * 109.45882 * 58.53169 * 14 13 12 17 17 C 1.36938 * 120.00076 * 84.93496 * 16 14 13 18 18 H 1.08002 * 119.99933 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00262 * 179.97438 * 17 16 14 20 20 N 1.31614 * 120.00041 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00070 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47245 * 89.99900 * 21 19 17 23 23 H 1.48497 * 109.46927 * 210.00402 * 21 19 17 24 24 H 1.48503 * 109.46668 * 329.99821 * 21 19 17 25 25 C 1.53042 * 109.53884 * 298.50989 * 14 13 12 26 26 H 1.09000 * 109.50052 * 301.42011 * 25 14 13 27 27 C 1.53002 * 109.52520 * 181.33237 * 25 14 13 28 28 C 1.46925 * 120.63081 * 179.97438 * 11 9 8 29 29 H 1.08999 * 109.47541 * 90.02288 * 1 2 3 30 30 H 1.09010 * 109.46941 * 210.01743 * 1 2 3 31 31 H 1.09001 * 109.47388 * 330.01537 * 1 2 3 32 32 H 1.09003 * 109.46820 * 209.97016 * 8 7 5 33 33 H 1.08996 * 109.47102 * 329.97467 * 8 7 5 34 34 H 1.08998 * 109.58751 * 246.19555 * 12 11 9 35 35 H 1.08999 * 109.59050 * 6.62700 * 12 11 9 36 36 H 1.09003 * 109.63243 * 294.86774 * 13 12 11 37 37 H 1.08998 * 109.46131 * 174.73936 * 13 12 11 38 38 H 0.97000 * 120.00430 * 264.92738 * 16 14 13 39 39 H 0.96999 * 120.00401 * 180.02562 * 20 19 17 40 40 H 1.08999 * 109.47073 * 300.14466 * 27 25 14 41 41 H 1.08992 * 109.47260 * 60.14786 * 27 25 14 42 42 H 1.09005 * 109.47029 * 180.15187 * 27 25 14 43 43 H 1.08994 * 109.58805 * 353.37289 * 28 11 9 44 44 H 1.08995 * 109.58711 * 113.80470 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0428 0.0000 4 8 3.4540 0.7270 0.0005 5 6 3.6036 -0.6052 0.0004 6 17 5.1012 -1.4833 0.0003 7 6 2.3531 -1.1314 0.0003 8 6 1.9581 -2.5857 0.0006 9 6 1.8268 -3.0702 1.4215 10 8 2.0340 -2.3096 2.3432 11 7 1.4791 -4.3488 1.6682 12 6 1.2190 -5.2804 0.5622 13 6 2.0955 -6.5270 0.7570 14 6 1.8364 -7.1135 2.1466 15 1 2.4370 -8.0135 2.2784 16 7 0.4168 -7.4506 2.2771 17 6 -0.0448 -8.6576 1.8240 18 1 0.6378 -9.3612 1.3708 19 6 -1.3899 -8.9773 1.9481 20 7 -2.2216 -8.1205 2.5018 21 14 -2.0194 -10.6241 1.3307 22 1 -1.9358 -11.6270 2.4227 23 1 -3.4322 -10.4824 0.8958 24 1 -1.1907 -11.0718 0.1827 25 6 2.2168 -6.0859 3.2150 26 1 3.2669 -5.8161 3.1028 27 6 1.9890 -6.6847 4.6045 28 6 1.3476 -4.8360 3.0480 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8899 0.5142 31 1 -0.3634 0.8901 0.5136 32 1 1.0039 -2.7032 -0.5129 33 1 2.7217 -3.1697 -0.5133 34 1 0.1671 -5.5661 0.5648 35 1 1.4675 -4.8018 -0.3850 36 1 3.1468 -6.2530 0.6681 37 1 1.8471 -7.2680 -0.0027 38 1 -0.1963 -6.8189 2.6846 39 1 -3.1614 -8.3439 2.5888 40 1 0.9390 -6.9553 4.7158 41 1 2.6079 -7.5739 4.7229 42 1 2.2576 -5.9511 5.3647 43 1 1.6810 -4.0640 3.7414 44 1 0.3060 -5.0861 3.2495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036213379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:20 Heat of formation + Delta-G solvation = 32.879650 kcal Electronic energy + Delta-G solvation = -28295.157147 eV Core-core repulsion = 24277.237722 eV Total energy + Delta-G solvation = -4017.919425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -45.23650 -40.11548 -37.88114 -37.41049 -35.49403 -34.33537 -33.03592 -32.46009 -31.42664 -29.43711 -29.18593 -28.78090 -26.12858 -24.89489 -23.53169 -22.36382 -21.70103 -21.66482 -19.65209 -18.32512 -18.04302 -17.80355 -17.41746 -16.84145 -15.92278 -15.66972 -15.06814 -14.69009 -14.33707 -14.01392 -13.96498 -13.61171 -13.43173 -13.37494 -13.31124 -13.07032 -12.87399 -12.63974 -12.57113 -12.33150 -12.19836 -12.05237 -11.55960 -11.40396 -11.23281 -11.10498 -10.95261 -10.84084 -10.53612 -10.51865 -10.23106 -10.22527 -9.88425 -9.74164 -9.59752 -9.31980 -8.97881 -8.28379 -7.02760 -5.83861 -3.12423 0.83426 1.03022 1.84906 2.72821 3.18854 3.38024 3.42346 3.43931 3.45371 3.81958 4.30818 4.53157 4.57769 4.61287 4.75210 5.12783 5.17923 5.25831 5.27877 5.31891 5.35829 5.41672 5.47248 5.48438 5.54246 5.68119 5.76159 5.85147 5.89659 6.02676 6.04272 6.19987 6.26932 6.35782 6.46348 6.58168 6.63844 6.71782 6.88224 6.95907 7.63575 7.64285 7.86517 8.30528 8.34643 9.46451 10.02864 10.37912 11.38436 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.002904 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.397045 B = 9638.526359 C =10154.246954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.046 3.954 3 N -0.349 5.349 4 O 0.108 5.892 5 C 0.011 3.989 6 Cl 0.048 6.952 7 C -0.145 4.145 8 C -0.068 4.068 9 C 0.515 3.485 10 O -0.544 6.544 11 N -0.599 5.599 12 C 0.111 3.889 13 C -0.150 4.150 14 C 0.179 3.821 15 H 0.051 0.949 16 N -0.719 5.719 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.283 1.283 25 C -0.108 4.108 26 H 0.065 0.935 27 C -0.137 4.137 28 C 0.120 3.880 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.043 0.957 43 H 0.083 0.917 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.667 12.640 -6.586 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 N -0.056 5.056 4 O 0.042 5.958 5 C -0.079 4.079 6 Cl 0.076 6.924 7 C -0.150 4.150 8 C -0.108 4.108 9 C 0.302 3.698 10 O -0.422 6.422 11 N -0.331 5.331 12 C -0.011 4.011 13 C -0.191 4.191 14 C 0.068 3.932 15 H 0.069 0.931 16 N -0.361 5.361 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.735 3.265 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.128 4.128 26 H 0.083 0.917 27 C -0.195 4.195 28 C -0.002 4.002 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.650 14.095 -6.158 18.709 hybrid contribution -0.409 -1.759 -0.296 1.830 sum 10.241 12.336 -6.455 17.283 Atomic orbital electron populations 1.20244 0.85156 1.04576 1.03610 1.23253 0.99117 0.87681 1.01249 1.73908 0.88473 1.22871 1.20373 1.84890 1.22165 1.20538 1.68217 1.24452 0.90818 0.84945 1.07671 1.98453 1.28267 1.68998 1.96686 1.20157 0.90059 0.96916 1.07897 1.20035 1.04946 0.89277 0.96565 1.20206 0.77167 0.81938 0.90491 1.90695 1.50883 1.54613 1.46050 1.48103 1.67167 1.09524 1.08291 1.21876 1.02063 0.89707 0.87476 1.22600 0.97492 0.96989 1.02031 1.20207 0.88042 0.94412 0.90529 0.93148 1.42478 1.02441 1.18802 1.72394 1.19213 0.92119 0.93573 1.32028 0.91268 1.24695 0.96240 0.98108 1.01646 1.69641 1.03473 1.35329 1.49572 0.86248 0.78033 0.83885 0.78329 1.21836 1.21887 1.20841 1.21697 0.98819 0.95399 0.96890 0.91663 1.21667 1.03533 0.99684 0.94655 1.21645 1.00782 0.95865 0.81944 0.89662 0.89549 0.90041 0.86821 0.87214 0.89419 0.91218 0.93243 0.90686 0.78093 0.93516 0.91035 0.92812 0.93780 0.89824 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.39 36.01 0.37 -0.36 16 2 C 0.05 0.56 7.32 -82.13 -0.60 -0.04 16 3 N -0.35 -4.72 12.07 33.43 0.40 -4.31 16 4 O 0.11 1.40 11.20 17.12 0.19 1.60 16 5 C 0.01 0.14 8.12 29.82 0.24 0.38 16 6 Cl 0.05 0.49 29.23 -51.86 -1.52 -1.03 16 7 C -0.15 -1.76 4.82 -104.38 -0.50 -2.27 16 8 C -0.07 -0.74 4.45 -29.03 -0.13 -0.87 16 9 C 0.51 7.46 7.69 -10.99 -0.08 7.38 16 10 O -0.54 -9.73 15.45 5.55 0.09 -9.64 16 11 N -0.60 -8.80 2.97 -172.53 -0.51 -9.31 16 12 C 0.11 1.56 6.11 -3.49 -0.02 1.53 16 13 C -0.15 -2.25 5.79 -26.39 -0.15 -2.40 16 14 C 0.18 3.13 2.53 -67.89 -0.17 2.96 16 15 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 16 N -0.72 -15.73 3.64 -53.39 -0.19 -15.92 16 17 C -0.24 -5.98 9.93 -15.06 -0.15 -6.13 16 18 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -26.25 13.06 55.49 0.72 -25.52 16 21 Si 0.90 21.17 29.55 -169.99 -5.02 16.15 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.11 -1.68 2.67 -90.51 -0.24 -1.93 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 C -0.14 -2.14 9.06 37.16 0.34 -1.80 16 28 C 0.12 1.92 5.42 -3.73 -0.02 1.90 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.11 1.00 7.93 -51.93 -0.41 0.59 16 33 H 0.11 1.00 7.70 -51.93 -0.40 0.60 16 34 H 0.09 1.47 7.73 -51.93 -0.40 1.07 16 35 H 0.07 0.75 5.93 -51.93 -0.31 0.44 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.38 9.04 5.93 -40.82 -0.24 8.80 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.07 1.29 7.53 -51.93 -0.39 0.90 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 44 H 0.08 1.35 6.64 -51.93 -0.34 1.01 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -29.94 374.03 -7.63 -37.57 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.21 Total: 6.82 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.22 Total: -2.03 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.42 Total: -55.07 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.28 Total: -8.05 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: 0.49 SS G_CDS: -1.52 Total: -1.03 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.94 -7.63 -37.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.451 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds