Wall clock time and date at job start Sat Apr 11 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00369 * 2 1 4 4 H 1.48501 * 109.46943 * 270.00628 * 3 2 1 5 5 H 1.48501 * 109.46785 * 30.00112 * 3 2 1 6 6 H 1.48496 * 109.47257 * 150.00317 * 3 2 1 7 7 C 1.38812 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.47663 * 126.19929 * 359.97438 * 9 7 2 11 11 C 1.54644 * 106.93887 * 178.36119 * 10 9 7 12 12 C 1.56267 * 102.20602 * 335.91515 * 11 10 9 13 13 H 1.08997 * 112.61638 * 158.27058 * 12 11 10 14 14 C 1.51872 * 106.81860 * 282.54937 * 12 11 10 15 15 N 1.43527 * 116.04548 * 130.06547 * 14 12 11 16 16 C 1.34774 * 115.76417 * 180.58748 * 15 14 12 17 17 O 1.21682 * 120.00052 * 359.97438 * 16 15 14 18 18 C 1.46724 * 119.99909 * 179.97438 * 16 15 14 19 19 O 1.35352 * 126.64355 * 0.02562 * 18 16 15 20 20 C 1.33657 * 107.68418 * 180.02562 * 19 18 16 21 21 N 1.30620 * 109.15638 * 359.97438 * 20 19 18 22 22 C 1.33690 * 108.99317 * 359.73153 * 21 20 19 23 23 C 1.50704 * 126.27480 * 180.26928 * 22 21 20 24 24 F 1.39901 * 109.47235 * 120.18878 * 23 22 21 25 25 F 1.39894 * 109.46948 * 240.18889 * 23 22 21 26 26 C 1.44221 * 128.47251 * 0.56304 * 15 14 12 27 27 C 1.51864 * 112.74934 * 6.20384 * 26 15 14 28 28 C 1.46661 * 126.19820 * 179.97438 * 9 7 2 29 29 H 1.09001 * 108.98356 * 90.75376 * 28 9 7 30 30 H 0.97000 * 119.99299 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.96628 * 58.99147 * 10 9 7 32 32 H 1.08994 * 109.99284 * 297.74704 * 10 9 7 33 33 H 1.08998 * 110.85655 * 217.73850 * 11 10 9 34 34 H 1.08996 * 110.85958 * 94.09752 * 11 10 9 35 35 H 1.09003 * 108.16955 * 251.77390 * 14 12 11 36 36 H 1.09000 * 108.16438 * 8.36289 * 14 12 11 37 37 H 1.08002 * 125.42671 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.46993 * 0.18807 * 23 22 21 39 39 H 1.09003 * 108.82833 * 245.36776 * 26 15 14 40 40 H 1.08994 * 108.74468 * 126.98672 * 26 15 14 41 41 H 1.08993 * 109.00183 * 203.59622 * 27 26 15 42 42 H 1.09004 * 108.99178 * 84.83927 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1424 -2.5475 0.0005 11 6 -0.4307 -4.0662 -0.0422 12 6 0.8752 -4.6324 -0.6872 13 1 1.0289 -5.6883 -0.4647 14 6 0.7858 -4.3537 -2.1774 15 7 1.9327 -3.7278 -2.7714 16 6 1.8425 -3.4719 -4.0915 17 8 0.8329 -3.7705 -4.7016 18 6 2.9617 -2.8332 -4.7932 19 8 4.1403 -2.4472 -4.2510 20 6 4.8795 -1.9102 -5.2266 21 7 4.2066 -1.9498 -6.3455 22 6 3.0185 -2.5193 -6.1187 23 6 1.9380 -2.7650 -7.1401 24 9 1.6689 -4.1359 -7.2137 25 9 0.7768 -2.0814 -6.7643 26 6 3.1690 -3.3365 -2.1401 27 6 3.2582 -3.7886 -0.6931 28 6 1.9174 -3.7300 -0.0016 29 1 2.0489 -4.0603 1.0288 30 1 -0.4849 0.8401 0.0004 31 1 -0.5701 -2.0626 -0.8770 32 1 -0.5637 -2.1141 0.9075 33 1 -1.2969 -4.2793 -0.6687 34 1 -0.5707 -4.4632 0.9632 35 1 0.6112 -5.2996 -2.6903 36 1 -0.0791 -3.7138 -2.3522 37 1 5.8750 -1.5084 -5.1089 38 1 2.2709 -2.4073 -8.1144 39 1 3.2533 -2.2502 -2.1749 40 1 3.9993 -3.7713 -2.6963 41 1 3.9596 -3.1447 -0.1627 42 1 3.6281 -4.8136 -0.6639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036822421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:30 Heat of formation + Delta-G solvation = -59.823308 kcal Electronic energy + Delta-G solvation = -32131.260119 eV Core-core repulsion = 27557.524112 eV Total energy + Delta-G solvation = -4573.736008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.82712 -46.83277 -43.70190 -40.36257 -38.27744 -35.77353 -34.87268 -33.01412 -31.98107 -31.28702 -29.54351 -28.05291 -27.02260 -25.28236 -24.32075 -23.41068 -22.76379 -21.98398 -20.44537 -20.05612 -18.39278 -17.71868 -17.47362 -17.20495 -17.14729 -16.75173 -16.43535 -15.94120 -15.87232 -15.56709 -14.80043 -14.53369 -14.18753 -14.04624 -13.83639 -13.67168 -13.28059 -13.16956 -12.98741 -12.71402 -12.58591 -12.14826 -11.78446 -11.73566 -11.55378 -11.39200 -11.28595 -11.06709 -10.95538 -10.82888 -10.75829 -10.24207 -10.14771 -9.90904 -9.90578 -9.75048 -9.63058 -9.35696 -8.65800 -8.21459 -6.88076 -5.76088 -3.08931 0.60530 2.09669 2.25353 3.08087 3.22373 3.29529 3.33966 3.37926 3.41811 4.03472 4.22260 4.36944 4.42790 4.82343 5.00876 5.04685 5.11136 5.19079 5.22146 5.29659 5.35106 5.42230 5.49267 5.65293 5.69708 5.84209 5.92676 6.01396 6.15278 6.22967 6.27265 6.36168 6.42415 6.59723 6.66037 6.80060 6.92763 7.17281 7.46214 7.49986 7.57550 7.77297 8.18000 8.19136 9.14671 9.77221 10.44921 11.36158 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011280 B = 0.005096 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.612749 B = 5492.879840 C = 6372.567318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.113 4.113 13 H 0.084 0.916 14 C 0.143 3.857 15 N -0.554 5.554 16 C 0.577 3.423 17 O -0.502 6.502 18 C -0.028 4.028 19 O -0.170 6.170 20 C 0.194 3.806 21 N -0.473 5.473 22 C -0.030 4.030 23 C 0.364 3.636 24 F -0.185 7.185 25 F -0.180 7.180 26 C 0.121 3.879 27 C -0.121 4.121 28 C 0.169 3.831 29 H 0.027 0.973 30 H 0.252 0.748 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.261 0.739 38 H 0.128 0.872 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.696 -8.516 -8.481 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.051 3.949 11 C -0.181 4.181 12 C -0.133 4.133 13 H 0.103 0.897 14 C 0.021 3.979 15 N -0.284 5.284 16 C 0.361 3.639 17 O -0.379 6.379 18 C -0.086 4.086 19 O -0.055 6.055 20 C -0.031 4.031 21 N -0.201 5.201 22 C -0.154 4.154 23 C 0.309 3.691 24 F -0.166 7.166 25 F -0.161 7.161 26 C -0.001 4.001 27 C -0.160 4.160 28 C 0.061 3.939 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.276 0.724 38 H 0.146 0.854 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.300 -8.233 -9.180 14.864 hybrid contribution 0.449 0.947 0.801 1.319 sum 8.748 -7.287 -8.379 14.136 Atomic orbital electron populations 1.69941 1.04833 1.25030 1.56538 1.24767 0.95627 0.97493 1.02292 0.86236 0.78688 0.84038 0.77512 1.21764 1.21627 1.20688 1.18876 0.90166 0.82150 1.44102 0.90532 1.44362 1.01442 0.99128 1.86776 1.21321 0.84263 0.88247 1.01037 1.23335 0.95581 0.99699 0.99462 1.22459 0.98789 0.98879 0.93203 0.89749 1.20428 0.87031 0.96946 0.93533 1.46233 1.17059 1.57809 1.07260 1.16607 0.84410 0.80056 0.82797 1.90928 1.28181 1.52197 1.66563 1.23298 0.87253 1.04667 0.93372 1.84901 1.23504 1.57970 1.39091 1.28361 0.99009 0.95785 0.79985 1.70114 1.03724 1.17961 1.28268 1.22327 0.95991 1.03556 0.93572 1.19133 0.79178 0.75027 0.95750 1.93047 1.94299 1.32149 1.97092 1.93086 1.50624 1.79117 1.93321 1.20917 0.83409 1.01380 0.94443 1.21226 0.99983 1.00641 0.94139 1.20248 0.90499 0.87514 0.95679 0.95524 0.93727 0.93484 0.93883 0.91783 0.92087 0.92572 0.90809 0.72391 0.85436 0.90249 0.92214 0.90290 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.43 10.41 55.49 0.58 -25.85 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 3 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.22 -5.77 8.84 -15.06 -0.13 -5.91 16 8 H 0.08 1.87 6.89 -52.49 -0.36 1.51 16 9 N -0.59 -13.81 3.04 -164.19 -0.50 -14.31 16 10 C 0.18 4.10 4.82 -2.54 -0.01 4.08 16 11 C -0.14 -2.53 6.14 -24.11 -0.15 -2.67 16 12 C -0.11 -1.87 3.80 -88.93 -0.34 -2.21 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.14 2.54 4.61 -6.19 -0.03 2.51 16 15 N -0.55 -10.05 3.19 -180.70 -0.58 -10.62 16 16 C 0.58 10.90 7.49 -12.83 -0.10 10.80 16 17 O -0.50 -10.46 13.50 5.20 0.07 -10.39 16 18 C -0.03 -0.47 6.70 -36.84 -0.25 -0.71 16 19 O -0.17 -2.33 7.05 4.42 0.03 -2.30 16 20 C 0.19 2.05 13.21 52.25 0.69 2.74 16 21 N -0.47 -6.24 11.26 -10.88 -0.12 -6.36 16 22 C -0.03 -0.46 6.59 -82.47 -0.54 -1.00 16 23 C 0.36 5.26 5.10 36.01 0.18 5.44 16 24 F -0.18 -2.92 16.21 2.25 0.04 -2.88 16 25 F -0.18 -3.13 16.18 2.25 0.04 -3.09 16 26 C 0.12 2.00 4.23 -5.83 -0.02 1.97 16 27 C -0.12 -1.93 5.10 -28.33 -0.14 -2.07 16 28 C 0.17 3.14 2.92 -68.35 -0.20 2.94 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.05 1.25 7.13 -51.93 -0.37 0.88 16 32 H 0.04 1.12 7.58 -51.93 -0.39 0.72 16 33 H 0.06 1.05 7.81 -51.93 -0.41 0.65 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 36 H 0.07 1.51 6.56 -51.93 -0.34 1.17 16 37 H 0.26 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.51 6.71 -51.93 -0.35 1.16 16 40 H 0.06 0.84 6.41 -51.93 -0.33 0.51 16 41 H 0.08 1.27 7.36 -51.93 -0.38 0.89 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -32.99 338.34 -6.53 -39.52 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.02 Total: -1.05 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: -1.14 Total: 15.68 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.62 Total: -57.14 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.10 Total: -12.69 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.07 Total: -5.97 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.99 -6.53 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.299 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds