Wall clock time and date at job start Sat Apr 11 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00369 * 2 1 4 4 H 1.48501 * 109.46943 * 270.00628 * 3 2 1 5 5 H 1.48501 * 109.46785 * 30.00112 * 3 2 1 6 6 H 1.48496 * 109.47257 * 150.00317 * 3 2 1 7 7 C 1.38812 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.47663 * 126.19929 * 359.97438 * 9 7 2 11 11 C 1.54644 * 106.93887 * 178.36119 * 10 9 7 12 12 C 1.56267 * 102.20602 * 335.91515 * 11 10 9 13 13 H 1.08997 * 112.61638 * 158.27058 * 12 11 10 14 14 C 1.51872 * 106.81860 * 282.54937 * 12 11 10 15 15 N 1.43527 * 116.04548 * 130.06547 * 14 12 11 16 16 C 1.34774 * 115.76417 * 180.58748 * 15 14 12 17 17 O 1.21682 * 120.00052 * 359.97438 * 16 15 14 18 18 C 1.46724 * 119.99909 * 179.97438 * 16 15 14 19 19 O 1.35352 * 126.64355 * 0.02562 * 18 16 15 20 20 C 1.33657 * 107.68418 * 180.02562 * 19 18 16 21 21 N 1.30620 * 109.15638 * 359.97438 * 20 19 18 22 22 C 1.33690 * 108.99317 * 359.73153 * 21 20 19 23 23 C 1.50704 * 126.27480 * 180.26928 * 22 21 20 24 24 F 1.39901 * 109.47235 * 120.18878 * 23 22 21 25 25 F 1.39894 * 109.46948 * 240.18889 * 23 22 21 26 26 C 1.44221 * 128.47251 * 0.56304 * 15 14 12 27 27 C 1.51864 * 112.74934 * 6.20384 * 26 15 14 28 28 C 1.46661 * 126.19820 * 179.97438 * 9 7 2 29 29 H 1.09001 * 108.98356 * 90.75376 * 28 9 7 30 30 H 0.97000 * 119.99299 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.96628 * 58.99147 * 10 9 7 32 32 H 1.08994 * 109.99284 * 297.74704 * 10 9 7 33 33 H 1.08998 * 110.85655 * 217.73850 * 11 10 9 34 34 H 1.08996 * 110.85958 * 94.09752 * 11 10 9 35 35 H 1.09003 * 108.16955 * 251.77390 * 14 12 11 36 36 H 1.09000 * 108.16438 * 8.36289 * 14 12 11 37 37 H 1.08002 * 125.42671 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.46993 * 0.18807 * 23 22 21 39 39 H 1.09003 * 108.82833 * 245.36776 * 26 15 14 40 40 H 1.08994 * 108.74468 * 126.98672 * 26 15 14 41 41 H 1.08993 * 109.00183 * 203.59622 * 27 26 15 42 42 H 1.09004 * 108.99178 * 84.83927 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1424 -2.5475 0.0005 11 6 -0.4307 -4.0662 -0.0422 12 6 0.8752 -4.6324 -0.6872 13 1 1.0289 -5.6883 -0.4647 14 6 0.7858 -4.3537 -2.1774 15 7 1.9327 -3.7278 -2.7714 16 6 1.8425 -3.4719 -4.0915 17 8 0.8329 -3.7705 -4.7016 18 6 2.9617 -2.8332 -4.7932 19 8 4.1403 -2.4472 -4.2510 20 6 4.8795 -1.9102 -5.2266 21 7 4.2066 -1.9498 -6.3455 22 6 3.0185 -2.5193 -6.1187 23 6 1.9380 -2.7650 -7.1401 24 9 1.6689 -4.1359 -7.2137 25 9 0.7768 -2.0814 -6.7643 26 6 3.1690 -3.3365 -2.1401 27 6 3.2582 -3.7886 -0.6931 28 6 1.9174 -3.7300 -0.0016 29 1 2.0489 -4.0603 1.0288 30 1 -0.4849 0.8401 0.0004 31 1 -0.5701 -2.0626 -0.8770 32 1 -0.5637 -2.1141 0.9075 33 1 -1.2969 -4.2793 -0.6687 34 1 -0.5707 -4.4632 0.9632 35 1 0.6112 -5.2996 -2.6903 36 1 -0.0791 -3.7138 -2.3522 37 1 5.8750 -1.5084 -5.1089 38 1 2.2709 -2.4073 -8.1144 39 1 3.2533 -2.2502 -2.1749 40 1 3.9993 -3.7713 -2.6963 41 1 3.9596 -3.1447 -0.1627 42 1 3.6281 -4.8136 -0.6639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036822421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:28 Heat of formation + Delta-G solvation = -84.259829 kcal Electronic energy + Delta-G solvation = -32132.319766 eV Core-core repulsion = 27557.524112 eV Total energy + Delta-G solvation = -4574.795655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -50.03220 -48.06240 -44.74804 -41.77195 -39.78590 -37.06476 -36.15725 -34.75886 -33.50301 -32.45748 -31.24147 -29.58564 -28.26162 -26.89621 -25.83764 -24.60356 -24.15807 -23.15573 -21.93112 -21.56556 -19.76563 -19.03843 -18.66820 -18.49208 -18.31778 -18.15076 -17.91432 -17.33826 -17.21932 -16.66268 -16.59809 -15.93272 -15.76868 -15.28526 -15.24256 -14.94163 -14.81031 -14.47252 -14.40500 -14.11100 -13.91125 -13.89063 -13.26514 -13.11938 -13.01764 -12.84862 -12.76716 -12.55605 -12.42470 -12.31890 -12.08046 -12.03967 -11.61639 -11.57434 -11.45749 -11.31739 -11.21846 -10.68481 -10.49114 -9.60824 -8.83308 -7.81113 -5.13269 -0.54614 1.12089 1.16349 1.41959 1.42998 1.51492 1.73277 1.95947 2.28695 2.49326 3.06929 3.13140 3.24107 3.38323 3.51777 3.74837 3.77092 3.88523 3.89644 4.00355 4.05103 4.08683 4.14389 4.25362 4.47285 4.53072 4.53396 4.75002 4.77644 4.83092 4.96872 5.01401 5.02851 5.15412 5.29128 5.36442 5.53954 5.58416 5.67501 5.78662 6.02489 6.21842 6.23237 6.80583 7.11671 7.82716 8.50173 9.30823 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011280 B = 0.005096 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.612749 B = 5492.879840 C = 6372.567318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.074 4.074 3 Si 0.962 3.038 4 H -0.296 1.296 5 H -0.303 1.303 6 H -0.259 1.259 7 C -0.209 4.209 8 H 0.092 0.908 9 N -0.607 5.607 10 C 0.184 3.816 11 C -0.130 4.130 12 C -0.096 4.096 13 H 0.132 0.868 14 C 0.144 3.856 15 N -0.560 5.560 16 C 0.569 3.431 17 O -0.536 6.536 18 C -0.067 4.067 19 O -0.174 6.174 20 C 0.228 3.772 21 N -0.491 5.491 22 C -0.026 4.026 23 C 0.353 3.647 24 F -0.195 7.195 25 F -0.203 7.203 26 C 0.125 3.875 27 C -0.117 4.117 28 C 0.157 3.843 29 H 0.038 0.962 30 H 0.239 0.761 31 H -0.002 1.002 32 H 0.004 0.996 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.319 0.681 38 H 0.173 0.827 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.299 -10.176 -8.652 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.267 4.267 3 Si 0.792 3.208 4 H -0.223 1.223 5 H -0.231 1.231 6 H -0.183 1.183 7 C -0.338 4.338 8 H 0.109 0.891 9 N -0.333 5.333 10 C 0.059 3.941 11 C -0.168 4.168 12 C -0.116 4.116 13 H 0.150 0.850 14 C 0.022 3.978 15 N -0.288 5.288 16 C 0.355 3.645 17 O -0.416 6.416 18 C -0.124 4.124 19 O -0.059 6.059 20 C 0.003 3.997 21 N -0.218 5.218 22 C -0.150 4.150 23 C 0.299 3.701 24 F -0.176 7.176 25 F -0.184 7.184 26 C 0.003 3.997 27 C -0.156 4.156 28 C 0.050 3.950 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.016 0.984 32 H 0.022 0.978 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.334 0.666 38 H 0.190 0.810 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.959 -9.933 -9.341 18.137 hybrid contribution -0.558 1.466 0.815 1.767 sum 11.402 -8.468 -8.525 16.564 Atomic orbital electron populations 1.70191 1.06385 1.24542 1.59421 1.25548 0.96322 1.00767 1.04022 0.85293 0.78237 0.80266 0.76981 1.22340 1.23066 1.18311 1.19304 0.90931 0.82989 1.40581 0.89080 1.44609 1.01655 1.00703 1.86295 1.21004 0.84469 0.91741 0.96866 1.23204 0.97036 0.95341 1.01230 1.22520 0.96633 1.00863 0.91547 0.85032 1.20396 0.85946 0.96683 0.94792 1.46364 1.17506 1.57724 1.07243 1.16956 0.84819 0.79709 0.83023 1.90890 1.29700 1.53674 1.67309 1.22845 0.88234 1.07555 0.93779 1.84872 1.22824 1.58440 1.39811 1.29808 0.99611 0.91894 0.78359 1.70184 1.03141 1.18998 1.29438 1.22548 0.96692 1.02489 0.93265 1.19753 0.78293 0.74425 0.97624 1.93016 1.94343 1.33062 1.97186 1.93036 1.52074 1.79570 1.93704 1.20955 0.83619 0.99761 0.95372 1.21234 0.98142 1.03175 0.93015 1.20562 0.92413 0.85164 0.96836 0.94432 0.95135 0.98388 0.97805 0.90825 0.89881 0.90954 0.94825 0.66646 0.80989 0.93302 0.89241 0.90220 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.38 10.41 21.65 0.23 -58.15 16 2 C -0.07 -4.17 5.49 84.86 0.47 -3.70 16 3 Si 0.96 45.31 29.55 68.60 2.03 47.34 16 4 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 5 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.21 -10.79 8.84 84.03 0.74 -10.04 16 8 H 0.09 4.34 6.89 -2.91 -0.02 4.32 16 9 N -0.61 -28.51 3.04 -673.36 -2.05 -30.56 16 10 C 0.18 8.99 4.82 86.72 0.42 9.40 16 11 C -0.13 -4.52 6.14 32.29 0.20 -4.32 16 12 C -0.10 -2.93 3.80 -9.70 -0.04 -2.97 16 13 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 14 C 0.14 5.05 4.61 86.56 0.40 5.45 16 15 N -0.56 -19.92 3.19 -843.85 -2.69 -22.61 16 16 C 0.57 21.71 7.49 86.46 0.65 22.35 16 17 O -0.54 -23.16 13.50 -4.29 -0.06 -23.22 16 18 C -0.07 -2.15 6.70 24.05 0.16 -1.99 16 19 O -0.17 -4.33 7.05 -7.11 -0.05 -4.38 16 20 C 0.23 3.92 13.21 130.42 1.72 5.64 16 21 N -0.49 -11.57 11.26 -303.13 -3.41 -14.99 16 22 C -0.03 -0.75 6.59 41.83 0.28 -0.48 16 23 C 0.35 10.05 5.10 71.24 0.36 10.41 16 24 F -0.19 -6.16 16.21 44.97 0.73 -5.43 16 25 F -0.20 -7.23 16.18 44.97 0.73 -6.50 16 26 C 0.12 3.86 4.23 86.43 0.37 4.22 16 27 C -0.12 -3.32 5.10 29.56 0.15 -3.17 16 28 C 0.16 5.45 2.92 44.63 0.13 5.58 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.00 -0.13 7.13 -2.39 -0.02 -0.14 16 32 H 0.00 0.21 7.58 -2.39 -0.02 0.19 16 33 H 0.07 2.42 7.81 -2.39 -0.02 2.40 16 34 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 36 H 0.03 1.44 6.56 -2.39 -0.02 1.42 16 37 H 0.32 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.17 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.05 1.81 6.71 -2.39 -0.02 1.79 16 40 H 0.09 2.23 6.41 -2.39 -0.02 2.22 16 41 H 0.08 2.27 7.36 -2.39 -0.02 2.25 16 42 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -78.98 338.34 2.52 -76.46 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 1.07 Total: 5.66 kcal Atomic # 6 Polarization: 30.39 SS G_CDS: 6.00 Total: 36.40 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -7.93 Total: -126.32 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.11 Total: -27.60 kcal Atomic # 9 Polarization: -13.39 SS G_CDS: 1.46 Total: -11.93 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -78.98 2.52 -76.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.804 kcal (2) G-P(sol) polarization free energy of solvation -78.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds