Wall clock time and date at job start Sat Apr 11 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48491 * 109.47251 * 87.57020 * 3 2 1 5 5 H 1.48499 * 109.47271 * 327.56628 * 3 2 1 6 6 H 1.48506 * 109.47000 * 207.56864 * 3 2 1 7 7 C 1.38810 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99772 * 37.45409 * 7 2 1 9 9 N 1.36933 * 120.00350 * 217.46423 * 7 2 1 10 10 C 1.46867 * 125.33652 * 357.25965 * 9 7 2 11 11 C 1.54465 * 106.66539 * 195.33446 * 10 9 7 12 12 C 1.53387 * 102.53775 * 332.27495 * 11 10 9 13 13 H 1.08996 * 105.69828 * 277.66624 * 12 11 10 14 14 C 1.49272 * 114.28532 * 161.96977 * 12 11 10 15 15 N 1.45261 * 114.71719 * 258.59551 * 14 12 11 16 16 C 1.34773 * 120.15524 * 143.67525 * 15 14 12 17 17 O 1.21690 * 119.99822 * 185.95068 * 16 15 14 18 18 C 1.46719 * 120.00416 * 5.94522 * 16 15 14 19 19 O 1.35341 * 126.64112 * 7.31054 * 18 16 15 20 20 C 1.33658 * 107.68814 * 180.02562 * 19 18 16 21 21 N 1.30618 * 109.15462 * 359.97438 * 20 19 18 22 22 C 1.33699 * 108.99298 * 359.72905 * 21 20 19 23 23 C 1.50696 * 126.27638 * 180.26711 * 22 21 20 24 24 F 1.39902 * 109.47088 * 120.19223 * 23 22 21 25 25 F 1.39897 * 109.47495 * 240.19506 * 23 22 21 26 26 C 1.46825 * 119.53827 * 323.90097 * 15 14 12 27 27 C 1.52959 * 107.40215 * 54.77507 * 26 15 14 28 28 C 1.48008 * 125.34028 * 176.96204 * 9 7 2 29 29 H 1.09004 * 110.22778 * 303.30443 * 28 9 7 30 30 H 0.96999 * 120.00359 * 185.01400 * 1 2 3 31 31 H 1.09003 * 110.02211 * 314.63466 * 10 9 7 32 32 H 1.09002 * 110.02081 * 75.99168 * 10 9 7 33 33 H 1.08999 * 110.79697 * 90.53452 * 11 10 9 34 34 H 1.09003 * 110.79736 * 214.01251 * 11 10 9 35 35 H 1.09009 * 108.43979 * 20.48450 * 14 12 11 36 36 H 1.08992 * 108.44518 * 137.79395 * 14 12 11 37 37 H 1.07995 * 125.42838 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.46886 * 0.19432 * 23 22 21 39 39 H 1.09003 * 109.87338 * 295.30058 * 26 15 14 40 40 H 1.08997 * 109.87006 * 174.25225 * 26 15 14 41 41 H 1.09006 * 109.38091 * 178.38018 * 27 26 15 42 42 H 1.08998 * 109.38326 * 58.70429 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4463 2.0761 1.3987 5 1 1.4744 2.6373 -0.7509 6 1 3.5726 1.4258 -0.6480 7 6 2.0102 -1.2021 -0.0005 8 1 1.6372 -2.0408 -0.5697 9 7 3.1677 -1.3248 0.7207 10 6 3.8091 -0.2486 1.4872 11 6 5.2470 -0.7208 1.7958 12 6 5.0997 -2.2475 1.8127 13 1 4.7266 -2.4968 2.8060 14 6 6.3866 -2.9901 1.6688 15 7 6.6372 -3.5189 0.3393 16 6 7.8898 -3.5353 -0.1578 17 8 8.0830 -3.8772 -1.3096 18 6 9.0207 -3.1408 0.6897 19 8 8.9813 -2.8724 2.0156 20 6 10.2201 -2.5524 2.4022 21 7 11.0199 -2.6131 1.3713 22 6 10.3158 -2.9798 0.2954 23 6 10.8543 -3.1747 -1.0985 24 9 10.6252 -4.4931 -1.5068 25 9 10.2085 -2.2962 -1.9751 26 6 5.5164 -4.0301 -0.4596 27 6 4.4708 -2.9170 -0.5456 28 6 3.9654 -2.5643 0.8552 29 1 3.3474 -3.3687 1.2542 30 1 -0.4850 -0.8368 0.0734 31 1 3.8358 0.6663 0.8953 32 1 3.2648 -0.0763 2.4158 33 1 5.9344 -0.4071 1.0103 34 1 5.5749 -0.3529 2.7681 35 1 7.2030 -2.3212 1.9413 36 1 6.3826 -3.8259 2.3684 37 1 10.5133 -2.2862 3.4069 38 1 11.9254 -2.9731 -1.1058 39 1 5.0856 -4.9065 0.0246 40 1 5.8629 -4.2911 -1.4596 41 1 3.6341 -3.2532 -1.1581 42 1 4.9189 -2.0342 -1.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036822422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:32 Heat of formation + Delta-G solvation = -53.306124 kcal Electronic energy + Delta-G solvation = -31286.719059 eV Core-core repulsion = 26713.265658 eV Total energy + Delta-G solvation = -4573.453401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.08911 -47.09427 -44.04790 -40.43264 -38.63686 -36.11001 -35.37854 -32.96820 -32.42880 -31.30970 -30.35799 -28.55708 -27.43729 -25.54491 -24.11245 -23.39780 -23.14343 -21.98589 -20.88390 -20.63029 -18.95094 -18.03988 -17.76261 -17.56283 -17.46019 -17.30943 -16.98054 -16.35620 -15.96265 -15.47692 -15.13653 -15.05866 -14.66947 -14.15773 -13.97440 -13.73344 -13.59370 -13.42403 -13.21444 -13.02591 -12.96175 -12.57812 -12.21158 -12.09602 -11.97810 -11.77003 -11.62191 -11.41613 -11.23650 -10.88096 -10.80462 -10.51819 -10.43997 -10.11291 -10.06433 -9.70796 -9.66629 -9.14983 -8.74623 -8.30372 -7.16019 -6.43837 -3.12987 0.24440 1.78197 1.86671 2.65384 2.81816 2.96598 3.41316 3.52027 3.67343 3.76847 3.92984 4.01597 4.48260 4.58522 4.61233 4.73497 4.77914 4.84753 4.90688 4.99218 5.06694 5.25079 5.32835 5.33880 5.46518 5.56109 5.57324 5.66557 5.76452 5.90324 5.94967 6.10785 6.13302 6.33915 6.38348 6.43611 6.68435 6.74490 6.84201 6.91896 7.12580 7.69288 7.74474 8.31322 8.98380 9.57972 10.24587 11.04317 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.003409 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.405054 B = 8212.566832 C = 8443.153789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.006 4.006 3 Si 1.043 2.957 4 H -0.295 1.295 5 H -0.299 1.299 6 H -0.293 1.293 7 C -0.344 4.344 8 H 0.081 0.919 9 N -0.603 5.603 10 C 0.119 3.881 11 C -0.123 4.123 12 C -0.108 4.108 13 H 0.073 0.927 14 C 0.124 3.876 15 N -0.586 5.586 16 C 0.593 3.407 17 O -0.495 6.495 18 C -0.039 4.039 19 O -0.175 6.175 20 C 0.201 3.799 21 N -0.471 5.471 22 C -0.021 4.021 23 C 0.361 3.639 24 F -0.181 7.181 25 F -0.183 7.183 26 C 0.112 3.888 27 C -0.141 4.141 28 C 0.177 3.823 29 H 0.050 0.950 30 H 0.267 0.733 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.278 -7.482 6.887 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.209 4.209 3 Si 0.876 3.124 4 H -0.223 1.223 5 H -0.228 1.228 6 H -0.222 1.222 7 C -0.470 4.470 8 H 0.099 0.901 9 N -0.329 5.329 10 C -0.006 4.006 11 C -0.161 4.161 12 C -0.128 4.128 13 H 0.092 0.908 14 C 0.001 3.999 15 N -0.318 5.318 16 C 0.378 3.622 17 O -0.371 6.371 18 C -0.096 4.096 19 O -0.061 6.061 20 C -0.025 4.025 21 N -0.198 5.198 22 C -0.145 4.145 23 C 0.307 3.693 24 F -0.162 7.162 25 F -0.164 7.164 26 C -0.009 4.009 27 C -0.181 4.181 28 C 0.070 3.930 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.279 0.721 38 H 0.148 0.852 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 22.588 -5.903 6.190 24.153 hybrid contribution -0.445 -1.535 0.343 1.635 sum 22.143 -7.438 6.533 24.255 Atomic orbital electron populations 1.70889 1.06678 1.29460 1.46468 1.25490 0.95605 1.00612 0.99186 0.84152 0.74564 0.77474 0.76181 1.22337 1.22750 1.22165 1.19820 0.96955 1.00691 1.29536 0.90135 1.45013 1.26809 1.04089 1.56972 1.21588 0.90659 0.92793 0.95594 1.22424 0.98492 0.94182 1.01019 1.20745 0.94355 0.96112 1.01572 0.90821 1.20712 0.98419 0.98137 0.82676 1.47591 1.06456 1.59820 1.17887 1.16473 0.81041 0.79321 0.85404 1.90965 1.83358 1.47821 1.14965 1.23281 0.97442 1.07201 0.81717 1.84799 1.33767 1.64211 1.23279 1.28466 0.76696 0.96564 1.00779 1.70165 1.34072 1.17671 0.97920 1.22403 0.90210 1.04680 0.97230 1.19190 0.96674 0.73457 0.80016 1.93074 1.96247 1.36042 1.90820 1.93078 1.84609 1.68648 1.70033 1.21852 0.85625 0.97017 0.96450 1.22438 0.97584 0.97726 1.00356 1.20451 0.89714 0.90863 0.91996 0.93209 0.92347 0.94522 0.95024 0.91896 0.91059 0.89543 0.91681 0.72136 0.85183 0.90824 0.88725 0.90530 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.70 55.49 0.76 -26.61 16 2 C -0.01 -0.17 5.38 -17.43 -0.09 -0.27 16 3 Si 1.04 26.29 24.94 -169.99 -4.24 22.05 16 4 H -0.30 -7.08 7.08 56.52 0.40 -6.68 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16 6 H -0.29 -7.18 6.68 56.52 0.38 -6.80 16 7 C -0.34 -9.47 9.90 -15.06 -0.15 -9.62 16 8 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 9 N -0.60 -14.12 3.02 -164.00 -0.50 -14.62 16 10 C 0.12 2.52 5.41 -3.07 -0.02 2.50 16 11 C -0.12 -1.96 6.37 -25.76 -0.16 -2.12 16 12 C -0.11 -1.59 2.45 -92.87 -0.23 -1.82 16 13 H 0.07 1.00 8.05 -51.93 -0.42 0.58 16 14 C 0.12 1.50 5.24 -6.54 -0.03 1.47 16 15 N -0.59 -8.18 2.99 -178.17 -0.53 -8.71 16 16 C 0.59 8.80 7.64 -12.84 -0.10 8.70 16 17 O -0.50 -8.58 13.38 5.20 0.07 -8.51 16 18 C -0.04 -0.49 6.70 -36.84 -0.25 -0.74 16 19 O -0.17 -1.64 7.59 4.45 0.03 -1.61 16 20 C 0.20 1.36 13.21 52.25 0.69 2.05 16 21 N -0.47 -4.62 11.26 -10.89 -0.12 -4.74 16 22 C -0.02 -0.25 6.59 -82.46 -0.54 -0.79 16 23 C 0.36 4.18 5.10 36.00 0.18 4.36 16 24 F -0.18 -2.43 15.99 2.25 0.04 -2.40 16 25 F -0.18 -2.57 16.44 2.25 0.04 -2.53 16 26 C 0.11 1.61 6.44 -3.89 -0.03 1.58 16 27 C -0.14 -2.47 5.18 -26.73 -0.14 -2.61 16 28 C 0.18 3.28 3.41 -67.70 -0.23 3.04 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16 31 H 0.04 0.85 3.04 -51.93 -0.16 0.69 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.97 4.65 -51.92 -0.24 0.72 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.26 0.24 8.06 -52.49 -0.42 -0.18 16 38 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.40 6.98 -51.93 -0.36 1.04 16 41 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -34.59 340.02 -5.43 -40.02 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -5.01 Total: -3.20 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -1.09 Total: 5.74 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.39 Total: -54.68 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.10 Total: -10.12 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.07 Total: -4.93 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -4.24 Total: 22.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.59 -5.43 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.284 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds