Wall clock time and date at job start Sat Apr 11 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00255 * 2 1 4 4 H 1.48505 * 109.47419 * 240.00202 * 3 2 1 5 5 H 1.48500 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47115 * 120.00021 * 3 2 1 7 7 C 1.38810 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00166 * 196.91841 * 7 2 1 9 9 N 1.37067 * 120.00383 * 16.91428 * 7 2 1 10 10 C 1.44801 * 120.09975 * 205.90418 * 9 7 2 11 11 C 1.51425 * 113.02061 * 268.40411 * 10 9 7 12 12 C 1.51178 * 114.24665 * 296.62302 * 11 10 9 13 13 H 1.09763 * 110.65465 * 178.37970 * 12 11 10 14 14 C 1.54111 * 108.49091 * 300.23662 * 12 11 10 15 15 C 1.53989 * 104.86358 * 93.31730 * 14 12 11 16 16 C 1.52113 * 105.56940 * 10.97898 * 15 14 12 17 17 H 1.09384 * 108.30092 * 123.73638 * 16 15 14 18 18 C 1.49299 * 120.12640 * 25.65171 * 9 7 2 19 19 N 1.47730 * 109.46816 * 5.88201 * 16 15 14 20 20 C 1.35006 * 127.13496 * 158.36521 * 19 16 15 21 21 O 1.21681 * 120.00148 * 180.02562 * 20 19 16 22 22 C 1.46724 * 119.99850 * 0.03401 * 20 19 16 23 23 O 1.35347 * 126.64308 * 359.96992 * 22 20 19 24 24 C 1.33657 * 107.68321 * 179.97438 * 23 22 20 25 25 N 1.30617 * 109.15684 * 0.02562 * 24 23 22 26 26 C 1.33694 * 108.99463 * 0.02562 * 25 24 23 27 27 C 1.50704 * 126.27411 * 179.97438 * 26 25 24 28 28 F 1.39896 * 109.46915 * 30.02573 * 27 26 25 29 29 F 1.39898 * 109.46864 * 150.02136 * 27 26 25 30 30 H 0.97000 * 120.00099 * 359.97438 * 1 2 3 31 31 H 1.08901 * 109.17352 * 146.57702 * 10 9 7 32 32 H 1.09338 * 108.42217 * 28.85829 * 10 9 7 33 33 H 1.09337 * 108.47905 * 175.44793 * 11 10 9 34 34 H 1.09173 * 108.71653 * 58.35625 * 11 10 9 35 35 H 1.09276 * 110.69437 * 334.02968 * 14 12 11 36 36 H 1.09372 * 110.55084 * 212.38254 * 14 12 11 37 37 H 1.09059 * 110.61901 * 251.40765 * 15 14 12 38 38 H 1.09272 * 110.29118 * 129.88817 * 15 14 12 39 39 H 1.09049 * 109.65894 * 13.08902 * 18 9 7 40 40 H 1.09147 * 109.45977 * 253.39782 * 18 9 7 41 41 H 1.08001 * 125.42455 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.46941 * 270.02044 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2226 0.2716 9 7 1.3693 -2.3634 -0.3464 10 6 1.8467 -3.6341 0.1576 11 6 2.8450 -4.3002 -0.7659 12 6 2.2844 -4.6761 -2.1186 13 1 3.0623 -5.1267 -2.7484 14 6 1.1131 -5.6552 -1.9074 15 6 -0.1429 -4.7653 -1.8656 16 6 0.3160 -3.3895 -2.3245 17 1 -0.2956 -3.0915 -3.1810 18 6 0.1735 -2.3220 -1.2394 19 7 1.7247 -3.4615 -2.7637 20 6 2.3653 -2.6076 -3.5902 21 8 3.5357 -2.7922 -3.8675 22 6 1.6505 -1.4569 -4.1539 23 8 0.3562 -1.1252 -3.9378 24 6 0.1006 -0.0129 -4.6334 25 7 1.1817 0.3535 -5.2684 26 6 2.1611 -0.5154 -4.9973 27 6 3.5712 -0.4629 -5.5264 28 9 3.9351 0.8688 -5.7528 29 9 4.4418 -1.0315 -4.5905 30 1 -0.4850 0.8400 0.0004 31 1 0.9985 -4.2998 0.3101 32 1 2.3264 -3.4638 1.1253 33 1 3.2157 -5.2066 -0.2796 34 1 3.6919 -3.6266 -0.9106 35 1 1.2298 -6.1997 -0.9672 36 1 1.0515 -6.3648 -2.7373 37 1 -0.5450 -4.7159 -0.8530 38 1 -0.9050 -5.1532 -2.5458 39 1 0.0936 -1.3368 -1.7001 40 1 -0.7257 -2.5163 -0.6521 41 1 -0.8488 0.5008 -4.6661 42 1 3.6292 -1.0196 -6.4617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039436774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:35 Heat of formation + Delta-G solvation = -61.998913 kcal Electronic energy + Delta-G solvation = -33057.294035 eV Core-core repulsion = 28483.463687 eV Total energy + Delta-G solvation = -4573.830349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.61107 -46.60248 -43.32982 -40.14406 -37.78319 -35.06506 -34.66282 -32.83993 -31.50812 -31.13084 -30.68592 -27.14065 -26.86108 -25.50796 -24.11954 -23.70516 -22.32442 -21.24540 -20.95436 -19.59757 -18.94302 -17.75144 -17.42668 -17.21437 -16.71801 -16.48985 -16.19545 -15.61146 -15.40553 -15.26310 -14.87179 -14.24597 -13.99398 -13.64306 -13.39363 -13.28058 -13.16918 -13.12198 -12.93336 -12.69102 -12.49461 -12.23548 -11.79487 -11.63288 -11.47328 -11.30589 -11.11992 -10.93958 -10.86510 -10.76811 -10.68699 -10.50732 -10.18019 -10.07663 -9.83111 -9.77198 -9.47065 -9.00690 -8.50121 -8.15375 -6.76599 -5.85630 -3.23928 0.92364 2.42615 2.54153 3.22168 3.37019 3.41596 3.45024 3.49618 3.60683 4.17652 4.40407 4.46621 4.58963 4.84354 4.91757 5.06514 5.07096 5.27452 5.31926 5.36772 5.48729 5.57256 5.60416 5.64621 5.68488 5.87382 5.96510 6.00825 6.06327 6.17434 6.29478 6.37605 6.41293 6.50522 6.64839 6.77814 6.94483 7.19748 7.42710 7.53019 7.77400 7.87835 8.36776 8.38518 9.14148 9.81080 10.32063 11.23906 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.007333 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.510305 B = 3817.484773 C = 5064.965307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.008 3.992 3 Si 0.888 3.112 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.063 0.937 9 N -0.583 5.583 10 C 0.157 3.843 11 C -0.156 4.156 12 C 0.149 3.851 13 H 0.084 0.916 14 C -0.124 4.124 15 C -0.119 4.119 16 C 0.099 3.901 17 H 0.066 0.934 18 C 0.163 3.837 19 N -0.572 5.572 20 C 0.624 3.376 21 O -0.509 6.509 22 C -0.025 4.025 23 O -0.164 6.164 24 C 0.199 3.801 25 N -0.472 5.472 26 C -0.031 4.031 27 C 0.358 3.642 28 F -0.194 7.194 29 F -0.162 7.162 30 H 0.253 0.747 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.035 0.965 41 H 0.258 0.742 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 -8.862 -9.259 13.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.190 4.190 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.080 0.920 9 N -0.305 5.305 10 C 0.029 3.971 11 C -0.197 4.197 12 C 0.047 3.953 13 H 0.102 0.898 14 C -0.163 4.163 15 C -0.157 4.157 16 C -0.006 4.006 17 H 0.084 0.916 18 C 0.037 3.963 19 N -0.304 5.304 20 C 0.410 3.590 21 O -0.387 6.387 22 C -0.083 4.083 23 O -0.048 6.048 24 C -0.027 4.027 25 N -0.199 5.199 26 C -0.156 4.156 27 C 0.303 3.697 28 F -0.175 7.175 29 F -0.143 7.143 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.053 0.947 41 H 0.273 0.727 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.907 -8.219 -9.756 12.899 hybrid contribution 0.204 0.786 0.608 1.015 sum -1.702 -7.433 -9.148 11.909 Atomic orbital electron populations 1.70001 1.04966 1.25392 1.54582 1.24854 0.95221 0.97954 1.01005 0.86574 0.79339 0.83798 0.78531 1.20968 1.21469 1.20663 1.19098 0.92611 0.84960 1.40856 0.91964 1.43916 1.32297 1.01177 1.53089 1.20008 0.94770 0.88022 0.94324 1.22100 1.01507 1.00431 0.95630 1.21590 0.95603 0.84092 0.94055 0.89827 1.22485 0.94363 0.97059 1.02349 1.22065 0.97212 0.93813 1.02615 1.22418 0.81077 0.97628 0.99433 0.91582 1.21718 0.89197 0.96634 0.88728 1.48480 1.12798 1.25106 1.43969 1.15690 0.84920 0.79616 0.78771 1.90940 1.13468 1.72439 1.61871 1.22968 0.82811 1.00538 1.01965 1.84725 1.26726 1.38174 1.55171 1.28275 1.00102 0.84914 0.89376 1.70142 0.98899 1.26438 1.24448 1.22347 0.97710 0.94062 1.01494 1.19263 0.81238 0.77756 0.91395 1.93009 1.92310 1.37043 1.95121 1.93212 1.69750 1.83676 1.67619 0.93731 0.94888 0.93705 0.92298 0.92015 0.89951 0.91612 0.89869 0.91421 0.89004 0.94659 0.72681 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.01 11.11 55.49 0.62 -24.39 16 2 C 0.01 0.21 4.93 -17.43 -0.09 0.13 16 3 Si 0.89 22.53 29.59 -169.99 -5.03 17.50 16 4 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.25 -6.67 9.58 -15.00 -0.14 -6.82 16 8 H 0.06 1.75 7.89 -52.48 -0.41 1.33 16 9 N -0.58 -13.73 2.55 -173.05 -0.44 -14.18 16 10 C 0.16 3.08 5.26 -5.75 -0.03 3.05 16 11 C -0.16 -2.68 5.03 -28.44 -0.14 -2.82 16 12 C 0.15 2.36 3.53 -67.17 -0.24 2.12 16 13 H 0.08 1.29 8.09 -51.50 -0.42 0.88 16 14 C -0.12 -1.53 5.99 -25.63 -0.15 -1.68 16 15 C -0.12 -1.59 5.74 -26.67 -0.15 -1.75 16 16 C 0.10 1.70 2.29 -67.77 -0.16 1.54 16 17 H 0.07 1.07 6.57 -51.71 -0.34 0.73 16 18 C 0.16 3.51 4.54 -2.55 -0.01 3.50 16 19 N -0.57 -10.47 2.28 -158.08 -0.36 -10.84 16 20 C 0.62 12.59 7.80 -12.73 -0.10 12.49 16 21 O -0.51 -10.98 13.47 5.21 0.07 -10.91 16 22 C -0.02 -0.48 6.93 -36.84 -0.26 -0.74 16 23 O -0.16 -2.85 6.61 4.43 0.03 -2.82 16 24 C 0.20 2.93 13.21 52.25 0.69 3.62 16 25 N -0.47 -8.13 11.21 -10.89 -0.12 -8.26 16 26 C -0.03 -0.58 6.78 -82.46 -0.56 -1.14 16 27 C 0.36 6.10 5.63 36.01 0.20 6.30 16 28 F -0.19 -3.47 17.29 2.25 0.04 -3.43 16 29 F -0.16 -3.26 13.48 2.25 0.03 -3.23 16 30 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.03 0.59 5.70 -51.98 -0.30 0.29 16 32 H 0.04 0.92 8.00 -51.74 -0.41 0.51 16 33 H 0.06 0.83 8.14 -51.74 -0.42 0.41 16 34 H 0.06 1.26 8.16 -51.83 -0.42 0.84 16 35 H 0.08 0.90 7.66 -51.77 -0.40 0.50 16 36 H 0.07 0.69 8.17 -51.72 -0.42 0.27 16 37 H 0.08 1.15 6.56 -51.90 -0.34 0.81 16 38 H 0.07 0.75 8.16 -51.78 -0.42 0.33 16 39 H 0.09 2.23 4.59 -51.90 -0.24 1.99 16 40 H 0.04 0.80 7.82 -51.85 -0.41 0.39 16 41 H 0.26 2.33 8.06 -52.49 -0.42 1.90 16 42 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -33.27 336.16 -6.17 -39.44 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -4.93 Total: -1.77 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: -1.13 Total: 17.82 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.31 Total: -57.66 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.10 Total: -13.73 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.07 Total: -6.66 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.27 -6.17 -39.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039436774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.558 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds