Wall clock time and date at job start Sat Apr 11 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00255 * 2 1 4 4 H 1.48505 * 109.47419 * 240.00202 * 3 2 1 5 5 H 1.48500 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47115 * 120.00021 * 3 2 1 7 7 C 1.38810 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00166 * 196.91841 * 7 2 1 9 9 N 1.37067 * 120.00383 * 16.91428 * 7 2 1 10 10 C 1.44801 * 120.09975 * 205.90418 * 9 7 2 11 11 C 1.51425 * 113.02061 * 268.40411 * 10 9 7 12 12 C 1.51178 * 114.24665 * 296.62302 * 11 10 9 13 13 H 1.09763 * 110.65465 * 178.37970 * 12 11 10 14 14 C 1.54111 * 108.49091 * 300.23662 * 12 11 10 15 15 C 1.53989 * 104.86358 * 93.31730 * 14 12 11 16 16 C 1.52113 * 105.56940 * 10.97898 * 15 14 12 17 17 H 1.09384 * 108.30092 * 123.73638 * 16 15 14 18 18 C 1.49299 * 120.12640 * 25.65171 * 9 7 2 19 19 N 1.47730 * 109.46816 * 5.88201 * 16 15 14 20 20 C 1.35006 * 127.13496 * 158.36521 * 19 16 15 21 21 O 1.21681 * 120.00148 * 180.02562 * 20 19 16 22 22 C 1.46724 * 119.99850 * 0.03401 * 20 19 16 23 23 O 1.35347 * 126.64308 * 359.96992 * 22 20 19 24 24 C 1.33657 * 107.68321 * 179.97438 * 23 22 20 25 25 N 1.30617 * 109.15684 * 0.02562 * 24 23 22 26 26 C 1.33694 * 108.99463 * 0.02562 * 25 24 23 27 27 C 1.50704 * 126.27411 * 179.97438 * 26 25 24 28 28 F 1.39896 * 109.46915 * 30.02573 * 27 26 25 29 29 F 1.39898 * 109.46864 * 150.02136 * 27 26 25 30 30 H 0.97000 * 120.00099 * 359.97438 * 1 2 3 31 31 H 1.08901 * 109.17352 * 146.57702 * 10 9 7 32 32 H 1.09338 * 108.42217 * 28.85829 * 10 9 7 33 33 H 1.09337 * 108.47905 * 175.44793 * 11 10 9 34 34 H 1.09173 * 108.71653 * 58.35625 * 11 10 9 35 35 H 1.09276 * 110.69437 * 334.02968 * 14 12 11 36 36 H 1.09372 * 110.55084 * 212.38254 * 14 12 11 37 37 H 1.09059 * 110.61901 * 251.40765 * 15 14 12 38 38 H 1.09272 * 110.29118 * 129.88817 * 15 14 12 39 39 H 1.09049 * 109.65894 * 13.08902 * 18 9 7 40 40 H 1.09147 * 109.45977 * 253.39782 * 18 9 7 41 41 H 1.08001 * 125.42455 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.46941 * 270.02044 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2226 0.2716 9 7 1.3693 -2.3634 -0.3464 10 6 1.8467 -3.6341 0.1576 11 6 2.8450 -4.3002 -0.7659 12 6 2.2844 -4.6761 -2.1186 13 1 3.0623 -5.1267 -2.7484 14 6 1.1131 -5.6552 -1.9074 15 6 -0.1429 -4.7653 -1.8656 16 6 0.3160 -3.3895 -2.3245 17 1 -0.2956 -3.0915 -3.1810 18 6 0.1735 -2.3220 -1.2394 19 7 1.7247 -3.4615 -2.7637 20 6 2.3653 -2.6076 -3.5902 21 8 3.5357 -2.7922 -3.8675 22 6 1.6505 -1.4569 -4.1539 23 8 0.3562 -1.1252 -3.9378 24 6 0.1006 -0.0129 -4.6334 25 7 1.1817 0.3535 -5.2684 26 6 2.1611 -0.5154 -4.9973 27 6 3.5712 -0.4629 -5.5264 28 9 3.9351 0.8688 -5.7528 29 9 4.4418 -1.0315 -4.5905 30 1 -0.4850 0.8400 0.0004 31 1 0.9985 -4.2998 0.3101 32 1 2.3264 -3.4638 1.1253 33 1 3.2157 -5.2066 -0.2796 34 1 3.6919 -3.6266 -0.9106 35 1 1.2298 -6.1997 -0.9672 36 1 1.0515 -6.3648 -2.7373 37 1 -0.5450 -4.7159 -0.8530 38 1 -0.9050 -5.1532 -2.5458 39 1 0.0936 -1.3368 -1.7001 40 1 -0.7257 -2.5163 -0.6521 41 1 -0.8488 0.5008 -4.6661 42 1 3.6292 -1.0196 -6.4617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039436774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:34 Heat of formation + Delta-G solvation = -85.184548 kcal Electronic energy + Delta-G solvation = -33058.299440 eV Core-core repulsion = 28483.463687 eV Total energy + Delta-G solvation = -4574.835753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.02728 -48.04329 -44.64167 -41.51676 -39.26636 -36.49582 -36.32305 -34.32158 -33.04165 -32.76763 -31.99723 -28.80873 -28.22767 -26.94893 -25.82212 -25.12389 -23.66261 -22.58564 -22.30731 -21.15508 -20.31551 -19.17578 -18.82526 -18.68018 -18.13671 -18.05435 -17.66289 -17.17323 -16.82312 -16.68661 -16.36471 -15.88748 -15.42206 -15.27846 -14.97762 -14.79873 -14.63437 -14.39412 -14.37008 -14.14126 -13.99262 -13.62602 -13.34850 -13.17035 -12.92764 -12.87015 -12.75760 -12.48143 -12.44126 -12.41022 -12.09138 -11.99085 -11.91842 -11.55933 -11.51897 -11.25905 -10.88061 -10.53615 -10.38018 -9.58419 -8.69145 -7.94105 -5.30916 -0.44796 1.15333 1.22566 1.29312 1.33275 1.40179 1.84228 2.03814 2.36367 2.41375 2.92047 3.12549 3.18085 3.30907 3.63334 3.70590 3.76201 3.84243 4.00218 4.07046 4.12402 4.17870 4.26885 4.34572 4.46140 4.63919 4.68625 4.75618 4.92587 4.96733 5.02600 5.08693 5.11378 5.20531 5.25148 5.38155 5.49941 5.55895 5.65361 5.71784 6.21464 6.35236 6.45560 6.92051 7.12842 7.88333 8.32298 9.12132 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.007333 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.510305 B = 3817.484773 C = 5064.965307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.026 4.026 3 Si 0.926 3.074 4 H -0.305 1.305 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.041 0.959 9 N -0.598 5.598 10 C 0.153 3.847 11 C -0.145 4.145 12 C 0.139 3.861 13 H 0.088 0.912 14 C -0.111 4.111 15 C -0.114 4.114 16 C 0.104 3.896 17 H 0.076 0.924 18 C 0.170 3.830 19 N -0.575 5.575 20 C 0.612 3.388 21 O -0.536 6.536 22 C -0.054 4.054 23 O -0.171 6.171 24 C 0.219 3.781 25 N -0.495 5.495 26 C -0.038 4.038 27 C 0.350 3.650 28 F -0.201 7.201 29 F -0.184 7.184 30 H 0.251 0.749 31 H 0.061 0.939 32 H 0.027 0.973 33 H 0.097 0.903 34 H 0.017 0.983 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.308 0.692 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 -10.819 -9.946 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.757 3.243 4 H -0.233 1.233 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.059 0.941 9 N -0.321 5.321 10 C 0.027 3.973 11 C -0.186 4.186 12 C 0.038 3.962 13 H 0.106 0.894 14 C -0.149 4.149 15 C -0.152 4.152 16 C 0.000 4.000 17 H 0.094 0.906 18 C 0.045 3.955 19 N -0.306 5.306 20 C 0.399 3.601 21 O -0.416 6.416 22 C -0.112 4.112 23 O -0.056 6.056 24 C -0.006 4.006 25 N -0.222 5.222 26 C -0.162 4.162 27 C 0.296 3.704 28 F -0.182 7.182 29 F -0.165 7.165 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.115 0.885 34 H 0.036 0.964 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.322 0.678 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.509 -10.206 -10.427 15.006 hybrid contribution 0.686 1.441 0.837 1.803 sum -2.823 -8.765 -9.589 13.295 Atomic orbital electron populations 1.70064 1.05148 1.25386 1.55483 1.25179 0.95826 0.99273 1.01951 0.85981 0.78460 0.82454 0.77451 1.23337 1.20634 1.20280 1.19125 0.91950 0.86824 1.40148 0.94138 1.44105 1.32606 1.01400 1.53953 1.20168 0.96034 0.87096 0.94017 1.21971 0.99185 1.00756 0.96664 1.21868 0.97543 0.84158 0.92677 0.89396 1.22489 0.91399 0.96212 1.04783 1.22079 0.98456 0.91426 1.03210 1.22353 0.80874 0.98734 0.98051 0.90607 1.21549 0.87775 0.96977 0.89188 1.48656 1.13339 1.25323 1.43240 1.15963 0.84901 0.80080 0.79168 1.90904 1.14422 1.73238 1.63038 1.22895 0.83726 1.01279 1.03294 1.84715 1.26037 1.39138 1.55687 1.29518 1.01018 0.83407 0.86650 1.70180 0.99459 1.26743 1.25822 1.22638 0.98441 0.94006 1.01143 1.19839 0.80293 0.77709 0.92588 1.92983 1.92325 1.37811 1.95120 1.93161 1.70470 1.84028 1.68800 0.93944 0.92092 0.95429 0.88509 0.96368 0.87757 0.88743 0.90075 0.88139 0.91964 0.95997 0.67761 0.81175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.95 11.11 21.65 0.24 -50.71 16 2 C -0.03 -1.43 4.93 84.86 0.42 -1.02 16 3 Si 0.93 47.21 29.59 68.60 2.03 49.24 16 4 H -0.31 -16.56 7.11 99.48 0.71 -15.85 16 5 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.25 -13.93 9.58 84.01 0.80 -13.12 16 8 H 0.04 2.39 7.89 -2.91 -0.02 2.36 16 9 N -0.60 -28.36 2.55 -701.42 -1.79 -30.15 16 10 C 0.15 5.90 5.26 86.18 0.45 6.36 16 11 C -0.15 -4.83 5.03 29.48 0.15 -4.68 16 12 C 0.14 4.10 3.53 44.39 0.16 4.26 16 13 H 0.09 2.54 8.09 -1.98 -0.02 2.53 16 14 C -0.11 -2.20 5.99 31.30 0.19 -2.02 16 15 C -0.11 -2.58 5.74 30.64 0.18 -2.41 16 16 C 0.10 3.37 2.29 44.43 0.10 3.47 16 17 H 0.08 2.31 6.57 -2.18 -0.01 2.30 16 18 C 0.17 7.28 4.54 85.80 0.39 7.67 16 19 N -0.58 -20.51 2.28 -772.13 -1.76 -22.27 16 20 C 0.61 24.92 7.80 86.42 0.67 25.59 16 21 O -0.54 -23.64 13.47 -4.29 -0.06 -23.70 16 22 C -0.05 -2.10 6.93 24.05 0.17 -1.93 16 23 O -0.17 -5.84 6.61 -7.06 -0.05 -5.89 16 24 C 0.22 6.11 13.21 130.42 1.72 7.83 16 25 N -0.49 -16.65 11.21 -303.13 -3.40 -20.05 16 26 C -0.04 -1.40 6.78 41.83 0.28 -1.11 16 27 C 0.35 11.95 5.63 71.24 0.40 12.35 16 28 F -0.20 -7.25 17.29 44.97 0.78 -6.47 16 29 F -0.18 -7.63 13.48 44.97 0.61 -7.02 16 30 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 31 H 0.06 2.01 5.70 -2.44 -0.01 2.00 16 32 H 0.03 1.13 8.00 -2.21 -0.02 1.11 16 33 H 0.10 2.47 8.14 -2.21 -0.02 2.45 16 34 H 0.02 0.74 8.16 -2.30 -0.02 0.72 16 35 H 0.10 1.69 7.66 -2.24 -0.02 1.67 16 36 H 0.09 1.43 8.17 -2.19 -0.02 1.41 16 37 H 0.08 1.92 6.56 -2.36 -0.02 1.90 16 38 H 0.10 1.70 8.16 -2.24 -0.02 1.68 16 39 H 0.06 3.03 4.59 -2.36 -0.01 3.02 16 40 H 0.02 0.98 7.82 -2.31 -0.02 0.97 16 41 H 0.31 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.17 4.12 8.14 -2.39 -0.02 4.10 16 Total: -1.00 -75.96 336.16 3.77 -72.19 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 1.09 Total: 3.58 kcal Atomic # 6 Polarization: 35.17 SS G_CDS: 6.08 Total: 41.25 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -6.71 Total: -123.19 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.10 Total: -29.58 kcal Atomic # 9 Polarization: -14.88 SS G_CDS: 1.38 Total: -13.50 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -75.96 3.77 -72.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039436774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.990 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds