Wall clock time and date at job start Sat Apr 11 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99930 * 2 1 4 4 H 1.48497 * 109.47375 * 270.00119 * 3 2 1 5 5 H 1.48498 * 109.47327 * 30.00535 * 3 2 1 6 6 H 1.48511 * 109.46971 * 150.00146 * 3 2 1 7 7 C 1.38817 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.47566 * 125.67387 * 0.04628 * 9 7 2 11 11 C 1.55175 * 105.00608 * 203.82936 * 10 9 7 12 12 C 1.53655 * 101.41905 * 324.50550 * 11 10 9 13 13 C 1.53649 * 111.41451 * 155.02773 * 12 11 10 14 14 C 1.55438 * 101.31245 * 87.06852 * 13 12 11 15 15 N 1.47555 * 104.88123 * 35.82407 * 14 13 12 16 16 C 1.34776 * 125.67435 * 156.03634 * 15 14 13 17 17 O 1.21685 * 119.99997 * 179.69735 * 16 15 14 18 18 C 1.46721 * 119.99964 * 359.69468 * 16 15 14 19 19 O 1.35349 * 126.64606 * 359.97438 * 18 16 15 20 20 C 1.33662 * 107.68535 * 179.97438 * 19 18 16 21 21 N 1.30613 * 109.15423 * 359.76922 * 20 19 18 22 22 C 1.33688 * 108.99804 * 0.38109 * 21 20 19 23 23 C 1.50703 * 126.27514 * 179.88654 * 22 21 20 24 24 F 1.39904 * 109.46969 * 239.68650 * 23 22 21 25 25 F 1.39901 * 109.47086 * 119.69054 * 23 22 21 26 26 C 1.47400 * 108.65145 * 335.77456 * 15 14 13 27 27 C 1.47404 * 125.67434 * 180.02562 * 9 7 2 28 28 H 0.96996 * 119.99891 * 359.97438 * 1 2 3 29 29 H 1.09007 * 110.33347 * 322.71136 * 10 9 7 30 30 H 1.08998 * 110.33376 * 84.83798 * 10 9 7 31 31 H 1.09005 * 111.03013 * 206.47325 * 11 10 9 32 32 H 1.08993 * 111.04043 * 82.54727 * 11 10 9 33 33 H 1.09002 * 111.04069 * 205.29714 * 13 12 11 34 34 H 1.09000 * 111.03772 * 329.18521 * 13 12 11 35 35 H 1.09005 * 110.48444 * 276.93562 * 14 13 12 36 36 H 1.09001 * 110.30474 * 154.62520 * 14 13 12 37 37 H 1.08001 * 125.42034 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47152 * 359.68721 * 23 22 21 39 39 H 1.09003 * 109.98425 * 121.71595 * 26 15 14 40 40 H 1.08997 * 109.98812 * 242.98059 * 26 15 14 41 41 H 1.08990 * 109.98554 * 58.57447 * 27 9 7 42 42 H 1.09001 * 109.98135 * 297.26521 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1429 -2.5340 -0.0010 11 6 -0.4073 -3.9380 0.6048 12 6 0.7834 -4.7368 0.0523 13 6 1.1151 -5.9406 0.9477 14 6 0.1668 -7.0251 0.3642 15 7 0.1363 -6.7607 -1.0872 16 6 -0.1594 -7.6624 -2.0443 17 8 -0.1591 -7.3295 -3.2147 18 6 -0.4815 -9.0454 -1.6750 19 8 -0.5210 -9.5590 -0.4234 20 6 -0.8542 -10.8495 -0.5245 21 7 -1.0261 -11.1504 -1.7838 22 6 -0.7995 -10.0619 -2.5262 23 6 -0.8861 -9.9731 -4.0281 24 9 0.3551 -9.5858 -4.5446 25 9 -1.8547 -9.0287 -4.3843 26 6 0.4767 -5.3449 -1.3157 27 6 1.9328 -3.7313 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.6004 -1.7621 0.6180 30 1 -0.5285 -2.4802 -1.0190 31 1 -1.3524 -4.3467 0.2470 32 1 -0.3846 -3.9048 1.6939 33 1 2.1603 -6.2311 0.8414 34 1 0.8736 -5.7315 1.9898 35 1 -0.8325 -6.9263 0.7883 36 1 0.5652 -8.0208 0.5596 37 1 -0.9676 -11.5334 0.3037 38 1 -1.1609 -10.9466 -4.4344 39 1 1.3524 -5.2717 -1.9606 40 1 -0.3668 -4.8280 -1.7732 41 1 2.5729 -3.8507 0.8735 42 1 2.5138 -3.8774 -0.9111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041688757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:38 Heat of formation + Delta-G solvation = -63.623654 kcal Electronic energy + Delta-G solvation = -30466.206369 eV Core-core repulsion = 25892.305566 eV Total energy + Delta-G solvation = -4573.900803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.07719 -47.08360 -44.02092 -40.36596 -38.53526 -36.08104 -35.50343 -32.84665 -31.59803 -30.65000 -29.22666 -28.53268 -27.48100 -25.77857 -24.52696 -23.61692 -22.56380 -22.25414 -20.49100 -20.26516 -18.96642 -18.27204 -17.74892 -17.45548 -17.36613 -16.97680 -16.76522 -16.20340 -15.82917 -15.61355 -14.91343 -14.67193 -14.36626 -14.12598 -13.91049 -13.81017 -13.41443 -13.21094 -13.00459 -12.95886 -12.57312 -12.18612 -12.10376 -12.03315 -11.80281 -11.73254 -11.44075 -11.38098 -11.20108 -10.96154 -10.81556 -10.50279 -10.29198 -10.08736 -9.98446 -9.79060 -9.72142 -9.54220 -8.76877 -8.65971 -6.86358 -5.67195 -3.08849 0.24220 1.76668 1.85576 2.72704 2.76104 2.95796 3.39605 3.44583 3.46292 3.76008 3.93068 4.02376 4.46576 4.47243 4.54664 4.77212 4.78422 4.83490 4.90899 4.98453 5.20362 5.26694 5.35629 5.47272 5.50521 5.69893 5.81795 5.85113 5.92469 6.03397 6.06888 6.13875 6.27516 6.49104 6.52707 6.68210 6.75437 6.83957 7.23370 7.47960 7.60047 7.75729 7.82727 8.32980 9.19676 9.80317 10.44853 11.36920 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022368 B = 0.002657 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.477189 B =10534.732121 C =11184.678045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.131 4.131 12 C -0.082 4.082 13 C -0.116 4.116 14 C 0.097 3.903 15 N -0.601 5.601 16 C 0.604 3.396 17 O -0.492 6.492 18 C -0.034 4.034 19 O -0.178 6.178 20 C 0.202 3.798 21 N -0.471 5.471 22 C -0.023 4.023 23 C 0.362 3.638 24 F -0.182 7.182 25 F -0.181 7.181 26 C 0.129 3.871 27 C 0.152 3.848 28 H 0.252 0.748 29 H 0.106 0.894 30 H 0.013 0.987 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.264 0.736 38 H 0.131 0.869 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.031 0.969 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -24.285 1.678 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.170 4.170 12 C -0.083 4.083 13 C -0.154 4.154 14 C -0.025 4.025 15 N -0.334 5.334 16 C 0.389 3.611 17 O -0.368 6.368 18 C -0.092 4.092 19 O -0.063 6.063 20 C -0.024 4.024 21 N -0.198 5.198 22 C -0.147 4.147 23 C 0.307 3.693 24 F -0.163 7.163 25 F -0.162 7.162 26 C 0.008 3.992 27 C 0.025 3.975 28 H 0.063 0.937 29 H 0.124 0.876 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.279 0.721 38 H 0.148 0.852 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.069 -24.430 0.801 24.635 hybrid contribution 0.589 1.306 0.399 1.487 sum -2.480 -23.124 1.200 23.287 Atomic orbital electron populations 1.69791 1.04894 1.24815 1.57547 1.24784 0.95725 0.97725 1.02378 0.86074 0.78500 0.83321 0.77599 1.21612 1.21671 1.20709 1.19067 0.90502 0.82397 1.43165 0.90466 1.44624 1.01852 0.99597 1.86960 1.22003 0.84634 0.92289 0.98342 1.22927 0.94998 0.98849 1.00218 1.21564 0.98888 0.94728 0.93102 1.22705 0.99177 0.93716 0.99792 1.22651 1.00725 0.99753 0.79389 1.48559 1.66609 1.11236 1.07009 1.15960 0.79141 0.80828 0.85148 1.91002 1.52055 1.77139 1.16565 1.23270 1.07651 0.96599 0.81678 1.84685 1.65603 1.25690 1.30309 1.28414 0.95851 0.81714 0.96436 1.70150 1.18981 1.28141 1.02548 1.22406 1.04935 0.89448 0.97928 1.19191 0.74071 0.91294 0.84747 1.93076 1.43150 1.92927 1.87127 1.93079 1.62641 1.68413 1.92107 1.22011 1.01724 0.77779 0.97652 1.21082 0.92634 0.85420 0.98323 0.93712 0.87601 0.96902 0.92285 0.91558 0.90450 0.89251 0.90732 0.90321 0.72101 0.85173 0.90482 0.90225 0.95122 0.95721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.10 55.49 0.56 -26.03 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.22 -6.12 10.28 -15.06 -0.15 -6.27 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.01 3.41 -170.41 -0.58 -15.59 16 10 C 0.15 3.57 5.85 -2.31 -0.01 3.55 16 11 C -0.13 -2.30 5.85 -25.24 -0.15 -2.45 16 12 C -0.08 -1.31 0.61 -154.03 -0.09 -1.40 16 13 C -0.12 -1.38 5.94 -25.10 -0.15 -1.53 16 14 C 0.10 1.07 6.14 -2.17 -0.01 1.06 16 15 N -0.60 -8.55 3.34 -172.22 -0.58 -9.13 16 16 C 0.60 9.22 7.82 -12.83 -0.10 9.12 16 17 O -0.49 -9.02 14.26 5.20 0.07 -8.94 16 18 C -0.03 -0.43 6.96 -36.84 -0.26 -0.69 16 19 O -0.18 -1.61 8.07 4.42 0.04 -1.58 16 20 C 0.20 1.29 13.21 52.24 0.69 1.98 16 21 N -0.47 -4.51 11.26 -10.88 -0.12 -4.63 16 22 C -0.02 -0.27 6.60 -82.46 -0.54 -0.81 16 23 C 0.36 4.20 5.10 36.01 0.18 4.38 16 24 F -0.18 -2.52 16.19 2.25 0.04 -2.48 16 25 F -0.18 -2.54 16.20 2.25 0.04 -2.50 16 26 C 0.13 2.10 6.02 -3.65 -0.02 2.07 16 27 C 0.15 2.99 6.51 -3.65 -0.02 2.97 16 28 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.11 2.82 5.89 -51.92 -0.31 2.51 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 32 H 0.07 1.11 7.82 -51.93 -0.41 0.71 16 33 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.09 0.97 7.78 -51.93 -0.40 0.56 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.73 6.25 -51.93 -0.32 0.41 16 37 H 0.26 0.11 8.06 -52.49 -0.42 -0.31 16 38 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.32 7.44 -51.93 -0.39 0.93 16 40 H 0.08 1.42 7.78 -51.93 -0.40 1.01 16 41 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 42 H 0.02 0.50 7.42 -51.93 -0.39 0.11 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -34.01 348.95 -6.13 -40.14 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.09 Total: -3.02 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -0.74 Total: 11.60 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.72 Total: -55.38 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.11 Total: -10.52 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.07 Total: -4.99 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.01 -6.13 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041688757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.483 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds