Wall clock time and date at job start Sat Apr 11 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99930 * 2 1 4 4 H 1.48497 * 109.47375 * 270.00119 * 3 2 1 5 5 H 1.48498 * 109.47327 * 30.00535 * 3 2 1 6 6 H 1.48511 * 109.46971 * 150.00146 * 3 2 1 7 7 C 1.38817 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.47566 * 125.67387 * 0.04628 * 9 7 2 11 11 C 1.55175 * 105.00608 * 203.82936 * 10 9 7 12 12 C 1.53655 * 101.41905 * 324.50550 * 11 10 9 13 13 C 1.53649 * 111.41451 * 155.02773 * 12 11 10 14 14 C 1.55438 * 101.31245 * 87.06852 * 13 12 11 15 15 N 1.47555 * 104.88123 * 35.82407 * 14 13 12 16 16 C 1.34776 * 125.67435 * 156.03634 * 15 14 13 17 17 O 1.21685 * 119.99997 * 179.69735 * 16 15 14 18 18 C 1.46721 * 119.99964 * 359.69468 * 16 15 14 19 19 O 1.35349 * 126.64606 * 359.97438 * 18 16 15 20 20 C 1.33662 * 107.68535 * 179.97438 * 19 18 16 21 21 N 1.30613 * 109.15423 * 359.76922 * 20 19 18 22 22 C 1.33688 * 108.99804 * 0.38109 * 21 20 19 23 23 C 1.50703 * 126.27514 * 179.88654 * 22 21 20 24 24 F 1.39904 * 109.46969 * 239.68650 * 23 22 21 25 25 F 1.39901 * 109.47086 * 119.69054 * 23 22 21 26 26 C 1.47400 * 108.65145 * 335.77456 * 15 14 13 27 27 C 1.47404 * 125.67434 * 180.02562 * 9 7 2 28 28 H 0.96996 * 119.99891 * 359.97438 * 1 2 3 29 29 H 1.09007 * 110.33347 * 322.71136 * 10 9 7 30 30 H 1.08998 * 110.33376 * 84.83798 * 10 9 7 31 31 H 1.09005 * 111.03013 * 206.47325 * 11 10 9 32 32 H 1.08993 * 111.04043 * 82.54727 * 11 10 9 33 33 H 1.09002 * 111.04069 * 205.29714 * 13 12 11 34 34 H 1.09000 * 111.03772 * 329.18521 * 13 12 11 35 35 H 1.09005 * 110.48444 * 276.93562 * 14 13 12 36 36 H 1.09001 * 110.30474 * 154.62520 * 14 13 12 37 37 H 1.08001 * 125.42034 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47152 * 359.68721 * 23 22 21 39 39 H 1.09003 * 109.98425 * 121.71595 * 26 15 14 40 40 H 1.08997 * 109.98812 * 242.98059 * 26 15 14 41 41 H 1.08990 * 109.98554 * 58.57447 * 27 9 7 42 42 H 1.09001 * 109.98135 * 297.26521 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1429 -2.5340 -0.0010 11 6 -0.4073 -3.9380 0.6048 12 6 0.7834 -4.7368 0.0523 13 6 1.1151 -5.9406 0.9477 14 6 0.1668 -7.0251 0.3642 15 7 0.1363 -6.7607 -1.0872 16 6 -0.1594 -7.6624 -2.0443 17 8 -0.1591 -7.3295 -3.2147 18 6 -0.4815 -9.0454 -1.6750 19 8 -0.5210 -9.5590 -0.4234 20 6 -0.8542 -10.8495 -0.5245 21 7 -1.0261 -11.1504 -1.7838 22 6 -0.7995 -10.0619 -2.5262 23 6 -0.8861 -9.9731 -4.0281 24 9 0.3551 -9.5858 -4.5446 25 9 -1.8547 -9.0287 -4.3843 26 6 0.4767 -5.3449 -1.3157 27 6 1.9328 -3.7313 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.6004 -1.7621 0.6180 30 1 -0.5285 -2.4802 -1.0190 31 1 -1.3524 -4.3467 0.2470 32 1 -0.3846 -3.9048 1.6939 33 1 2.1603 -6.2311 0.8414 34 1 0.8736 -5.7315 1.9898 35 1 -0.8325 -6.9263 0.7883 36 1 0.5652 -8.0208 0.5596 37 1 -0.9676 -11.5334 0.3037 38 1 -1.1609 -10.9466 -4.4344 39 1 1.3524 -5.2717 -1.9606 40 1 -0.3668 -4.8280 -1.7732 41 1 2.5729 -3.8507 0.8735 42 1 2.5138 -3.8774 -0.9111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041688757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:37 Heat of formation + Delta-G solvation = -88.776032 kcal Electronic energy + Delta-G solvation = -30467.297058 eV Core-core repulsion = 25892.305566 eV Total energy + Delta-G solvation = -4574.991492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.04305 -48.07694 -44.72875 -41.57956 -39.84902 -37.41133 -36.40384 -34.56440 -32.65421 -31.97810 -30.73548 -29.92950 -28.54380 -27.25589 -25.93861 -24.60259 -23.67806 -23.10972 -22.20905 -21.34091 -20.30006 -19.17192 -18.83203 -18.60380 -18.33051 -18.22533 -17.86436 -17.24230 -16.86277 -16.77253 -16.54814 -16.00633 -15.62746 -15.30665 -15.27092 -14.93422 -14.65221 -14.42455 -14.24974 -13.95228 -13.91081 -13.75090 -13.49276 -13.24769 -12.94700 -12.88281 -12.81518 -12.70339 -12.57990 -12.46536 -12.11583 -12.01335 -11.85355 -11.66317 -11.52097 -11.44533 -11.17847 -10.73854 -10.54905 -9.88352 -8.88573 -7.77186 -5.21167 -0.58856 1.04058 1.13180 1.46529 1.48458 1.56891 1.68486 1.74390 2.25672 2.49795 3.08075 3.10344 3.17791 3.32149 3.46721 3.55329 3.59658 3.75112 3.86541 3.86918 4.01291 4.16691 4.21529 4.25106 4.34720 4.52241 4.59957 4.66715 4.72807 4.82907 4.90350 4.96143 4.98407 5.00820 5.13468 5.24774 5.31384 5.47282 5.62853 5.82301 6.07550 6.23434 6.30977 6.65427 7.10997 7.78315 8.42134 9.24802 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022368 B = 0.002657 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.477189 B =10534.732121 C =11184.678045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.237 4.237 8 H 0.081 0.919 9 N -0.626 5.626 10 C 0.154 3.846 11 C -0.111 4.111 12 C -0.071 4.071 13 C -0.104 4.104 14 C 0.099 3.901 15 N -0.601 5.601 16 C 0.600 3.400 17 O -0.539 6.539 18 C -0.064 4.064 19 O -0.173 6.173 20 C 0.242 3.758 21 N -0.495 5.495 22 C -0.019 4.019 23 C 0.349 3.651 24 F -0.199 7.199 25 F -0.200 7.200 26 C 0.135 3.865 27 C 0.147 3.853 28 H 0.246 0.754 29 H 0.073 0.927 30 H -0.023 1.023 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.324 0.676 38 H 0.172 0.828 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 -27.523 4.237 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.366 4.366 8 H 0.099 0.901 9 N -0.352 5.352 10 C 0.029 3.971 11 C -0.149 4.149 12 C -0.072 4.072 13 C -0.142 4.142 14 C -0.021 4.021 15 N -0.333 5.333 16 C 0.387 3.613 17 O -0.418 6.418 18 C -0.122 4.122 19 O -0.059 6.059 20 C 0.017 3.983 21 N -0.221 5.221 22 C -0.143 4.143 23 C 0.295 3.705 24 F -0.181 7.181 25 F -0.181 7.181 26 C 0.013 3.987 27 C 0.022 3.978 28 H 0.056 0.944 29 H 0.091 0.909 30 H -0.005 1.005 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.338 0.662 38 H 0.189 0.811 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.646 -27.717 3.388 28.048 hybrid contribution 0.460 2.189 -0.385 2.270 sum -2.187 -25.527 3.004 25.796 Atomic orbital electron populations 1.70056 1.06211 1.24945 1.58714 1.25616 0.96611 1.00952 1.02850 0.85069 0.77770 0.79196 0.77243 1.21865 1.21911 1.19155 1.19457 0.91039 0.83783 1.42322 0.90074 1.44936 1.02623 1.00892 1.86799 1.21775 0.84078 0.95185 0.96107 1.22727 0.96409 0.94999 1.00795 1.21392 0.96556 0.95337 0.93943 1.22723 1.00262 0.91272 0.99965 1.22868 1.01541 1.00753 0.76984 1.48585 1.66239 1.09981 1.08529 1.16302 0.78302 0.82010 0.84662 1.90965 1.54018 1.78401 1.18416 1.22555 1.10926 0.95453 0.83235 1.84664 1.65912 1.26818 1.28472 1.29873 0.90719 0.80809 0.96850 1.70219 1.20833 1.27343 1.03739 1.22480 1.03866 0.90070 0.97917 1.19806 0.72998 0.92226 0.85516 1.93031 1.44353 1.93217 1.87453 1.93033 1.63312 1.69446 1.92342 1.21717 1.00018 0.79466 0.97544 1.21272 0.94035 0.84080 0.98379 0.94422 0.90947 1.00495 0.90741 0.89810 0.89267 0.86917 0.89215 0.87665 0.66195 0.81105 0.92153 0.92822 0.93585 0.96492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.97 10.10 21.65 0.22 -56.75 16 2 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 3 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 4 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.24 -13.27 10.28 84.03 0.86 -12.41 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.63 -31.89 3.41 -693.06 -2.36 -34.26 16 10 C 0.15 7.51 5.85 86.92 0.51 8.02 16 11 C -0.11 -3.81 5.85 31.56 0.18 -3.63 16 12 C -0.07 -2.20 0.61 -51.87 -0.03 -2.23 16 13 C -0.10 -2.12 5.94 31.65 0.19 -1.93 16 14 C 0.10 1.84 6.14 87.02 0.53 2.37 16 15 N -0.60 -16.56 3.34 -817.01 -2.73 -19.29 16 16 C 0.60 18.29 7.82 86.46 0.68 18.97 16 17 O -0.54 -20.69 14.26 -4.30 -0.06 -20.75 16 18 C -0.06 -1.49 6.96 24.05 0.17 -1.32 16 19 O -0.17 -2.42 8.07 -7.12 -0.06 -2.48 16 20 C 0.24 1.84 13.21 130.42 1.72 3.56 16 21 N -0.49 -7.73 11.26 -303.13 -3.41 -11.14 16 22 C -0.02 -0.42 6.60 41.84 0.28 -0.14 16 23 C 0.35 7.94 5.10 71.24 0.36 8.31 16 24 F -0.20 -5.64 16.19 44.97 0.73 -4.91 16 25 F -0.20 -5.74 16.20 44.97 0.73 -5.02 16 26 C 0.13 4.47 6.02 86.14 0.52 4.99 16 27 C 0.15 5.79 6.51 86.14 0.56 6.35 16 28 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.07 4.04 5.89 -2.38 -0.01 4.03 16 30 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 31 H 0.07 2.34 7.94 -2.38 -0.02 2.32 16 32 H 0.08 2.62 7.82 -2.39 -0.02 2.60 16 33 H 0.09 1.67 8.09 -2.39 -0.02 1.65 16 34 H 0.11 1.86 7.78 -2.39 -0.02 1.84 16 35 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.11 1.45 6.25 -2.39 -0.01 1.44 16 37 H 0.32 -2.14 8.06 -2.91 -0.02 -2.16 16 38 H 0.17 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 2.17 7.44 -2.39 -0.02 2.16 16 40 H 0.05 2.03 7.78 -2.39 -0.02 2.02 16 41 H 0.05 1.69 7.86 -2.39 -0.02 1.67 16 42 H 0.02 0.70 7.42 -2.39 -0.02 0.68 16 Total: -1.00 -80.68 348.95 3.15 -77.53 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: 1.07 Total: 1.58 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: 7.00 Total: 27.51 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -8.29 Total: -121.44 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.12 Total: -23.23 kcal Atomic # 9 Polarization: -11.39 SS G_CDS: 1.46 Total: -9.93 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -80.68 3.15 -77.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041688757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.246 kcal (2) G-P(sol) polarization free energy of solvation -80.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds