Wall clock time and date at job start Sat Apr 11 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99995 * 2 1 4 4 H 1.48504 * 109.46776 * 275.01111 * 3 2 1 5 5 H 1.48498 * 109.47365 * 35.00973 * 3 2 1 6 6 H 1.48500 * 109.47015 * 155.01201 * 3 2 1 7 7 C 1.38817 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99747 * 171.95930 * 7 2 1 9 9 N 1.36936 * 120.00100 * 351.95636 * 7 2 1 10 10 C 1.47444 * 126.06028 * 6.38899 * 9 7 2 11 11 C 1.54495 * 107.14962 * 181.58850 * 10 9 7 12 12 C 1.56031 * 102.61116 * 22.84357 * 11 10 9 13 13 H 1.08998 * 112.85737 * 202.92903 * 12 11 10 14 14 C 1.53098 * 106.39607 * 78.38039 * 12 11 10 15 15 C 1.53334 * 110.49757 * 195.29036 * 14 12 11 16 16 N 1.47155 * 107.71524 * 57.57526 * 15 14 12 17 17 C 1.34774 * 121.21249 * 122.68682 * 16 15 14 18 18 O 1.21684 * 119.99663 * 187.49773 * 17 16 15 19 19 C 1.46722 * 120.00198 * 7.49749 * 17 16 15 20 20 O 1.35344 * 126.64207 * 8.52839 * 19 17 16 21 21 C 1.33670 * 107.68266 * 180.26249 * 20 19 17 22 22 N 1.30619 * 109.14862 * 359.74843 * 21 20 19 23 23 C 1.33684 * 108.99931 * 0.02562 * 22 21 20 24 24 C 1.50703 * 126.27321 * 179.97438 * 23 22 21 25 25 F 1.39902 * 109.46939 * 330.02540 * 24 23 22 26 26 F 1.39901 * 109.47286 * 210.02360 * 24 23 22 27 27 C 1.46759 * 117.56862 * 302.41263 * 16 15 14 28 28 C 1.46462 * 126.06392 * 186.34445 * 9 7 2 29 29 H 1.09003 * 108.42185 * 269.27571 * 28 9 7 30 30 H 0.97000 * 120.00172 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.90004 * 300.97105 * 10 9 7 32 32 H 1.09000 * 109.90221 * 62.20522 * 10 9 7 33 33 H 1.09000 * 110.78306 * 141.12176 * 11 10 9 34 34 H 1.08995 * 110.78581 * 264.56363 * 11 10 9 35 35 H 1.08997 * 109.25617 * 315.70271 * 14 12 11 36 36 H 1.08998 * 109.25434 * 75.17031 * 14 12 11 37 37 H 1.09000 * 109.91127 * 298.02211 * 15 14 12 38 38 H 1.08997 * 109.86410 * 177.09775 * 15 14 12 39 39 H 1.07997 * 125.42204 * 179.79060 * 21 20 19 40 40 H 1.08998 * 109.47314 * 90.02405 * 24 23 22 41 41 H 1.09003 * 109.22224 * 173.10054 * 27 16 15 42 42 H 1.08998 * 109.23109 * 292.50956 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3917 2.1075 -1.3948 5 1 1.5047 2.6198 0.8032 6 1 3.5967 1.4119 0.5914 7 6 2.0103 -1.2022 0.0005 8 1 3.0822 -1.2068 -0.1303 9 7 1.3357 -2.3822 0.1670 10 6 -0.1287 -2.5442 0.2238 11 6 -0.4122 -4.0441 0.4624 12 6 0.9171 -4.5433 1.1094 13 1 1.0691 -5.6160 0.9904 14 6 0.8767 -4.1023 2.5749 15 6 2.2716 -4.2008 3.2039 16 7 3.1827 -3.3650 2.4059 17 6 3.8847 -2.3622 2.9697 18 8 4.5251 -1.5997 2.2703 19 6 3.8767 -2.1898 4.4268 20 8 3.3513 -3.0415 5.3380 21 6 3.5477 -2.5117 6.5494 22 7 4.1759 -1.3736 6.4226 23 6 4.3993 -1.1420 5.1251 24 6 5.0960 0.0599 4.5409 25 9 4.8845 1.1688 5.3672 26 9 4.5821 0.3232 3.2666 27 6 3.3036 -3.6674 0.9749 28 6 1.9409 -3.7072 0.3193 29 1 2.0452 -4.1540 -0.6695 30 1 -0.4850 0.8400 0.0004 31 1 -0.5357 -1.9543 1.0451 32 1 -0.5739 -2.2279 -0.7195 33 1 -1.2491 -4.1751 1.1483 34 1 -0.5997 -4.5571 -0.4807 35 1 0.5263 -3.0716 2.6307 36 1 0.1898 -4.7455 3.1251 37 1 2.6131 -5.2358 3.1895 38 1 2.2414 -3.8363 4.2307 39 1 3.2370 -2.9545 7.4842 40 1 6.1650 -0.1398 4.4674 41 1 3.9100 -2.8988 0.4957 42 1 3.7887 -4.6357 0.8523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042237612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:54 Heat of formation + Delta-G solvation = -54.033613 kcal Electronic energy + Delta-G solvation = -32426.750959 eV Core-core repulsion = 27853.266011 eV Total energy + Delta-G solvation = -4573.484948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.68400 -46.66767 -43.70183 -39.94049 -38.11312 -35.70568 -34.81293 -32.84452 -31.57994 -30.97779 -29.28604 -28.42061 -26.90392 -24.82951 -24.36222 -23.27976 -22.63347 -21.94968 -20.44843 -19.96924 -18.71323 -17.89831 -17.61850 -17.00301 -16.80246 -16.75170 -16.53738 -15.82598 -15.56663 -14.85254 -14.64535 -14.47630 -14.24858 -13.93059 -13.71667 -13.47878 -13.20737 -13.00409 -12.88310 -12.67088 -12.50165 -12.00198 -11.86135 -11.66387 -11.42268 -11.30056 -11.18785 -10.97056 -10.86243 -10.75711 -10.60488 -10.05050 -9.98132 -9.87624 -9.75627 -9.60814 -9.49150 -9.28875 -8.44141 -8.27262 -6.74549 -5.62209 -2.92925 0.62767 2.13057 2.21214 3.07719 3.34497 3.39011 3.53188 3.60926 3.73113 4.00782 4.28756 4.42575 4.64606 4.88035 4.97504 5.03997 5.08867 5.23367 5.28966 5.38655 5.45129 5.53974 5.62761 5.70317 5.71879 5.88153 5.93511 6.01574 6.09882 6.20330 6.27167 6.38053 6.42427 6.57356 6.67477 6.86863 6.97951 7.20561 7.59363 7.62027 7.67348 7.94008 8.29719 8.32874 9.31710 9.93574 10.56796 11.50384 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.006451 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.453453 B = 4339.625066 C = 6139.874978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.003 4.003 3 Si 0.894 3.106 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.214 4.214 8 H 0.082 0.918 9 N -0.588 5.588 10 C 0.177 3.823 11 C -0.143 4.143 12 C -0.103 4.103 13 H 0.076 0.924 14 C -0.121 4.121 15 C 0.100 3.900 16 N -0.579 5.579 17 C 0.596 3.404 18 O -0.479 6.479 19 C -0.035 4.035 20 O -0.178 6.178 21 C 0.187 3.813 22 N -0.466 5.466 23 C -0.023 4.023 24 C 0.354 3.646 25 F -0.193 7.193 26 F -0.157 7.157 27 C 0.116 3.884 28 C 0.153 3.847 29 H 0.029 0.971 30 H 0.249 0.751 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.259 0.741 40 H 0.128 0.872 41 H 0.099 0.901 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.019 -12.088 11.826 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.724 3.276 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.342 4.342 8 H 0.100 0.900 9 N -0.314 5.314 10 C 0.052 3.948 11 C -0.182 4.182 12 C -0.122 4.122 13 H 0.095 0.905 14 C -0.159 4.159 15 C -0.022 4.022 16 N -0.311 5.311 17 C 0.380 3.620 18 O -0.353 6.353 19 C -0.092 4.092 20 O -0.064 6.064 21 C -0.038 4.038 22 N -0.194 5.194 23 C -0.147 4.147 24 C 0.299 3.701 25 F -0.174 7.174 26 F -0.137 7.137 27 C -0.007 4.007 28 C 0.045 3.955 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.275 0.725 40 H 0.145 0.855 41 H 0.118 0.882 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.449 -11.042 11.885 17.458 hybrid contribution -0.215 0.509 -0.214 0.593 sum 6.234 -10.533 11.670 16.912 Atomic orbital electron populations 1.69973 1.04936 1.24826 1.57393 1.24709 0.95496 0.97484 1.02196 0.86318 0.80148 0.83910 0.77178 1.22067 1.21973 1.19225 1.18969 0.91381 0.82089 1.41766 0.90037 1.44291 1.01299 1.00947 1.84821 1.21233 0.84501 0.88558 1.00498 1.23162 0.95923 0.99959 0.99137 1.22398 0.97345 0.97836 0.94655 0.90538 1.21908 0.95136 1.03362 0.95481 1.22158 0.90209 0.94592 0.95287 1.47639 1.42050 1.31391 1.10062 1.16322 0.81688 0.81701 0.82323 1.90994 1.43698 1.41220 1.59410 1.23417 1.02377 0.91860 0.91568 1.84742 1.60335 1.44560 1.16781 1.28427 0.96487 0.89879 0.89029 1.70179 1.15988 1.15578 1.17619 1.22476 1.04063 0.98318 0.89883 1.19334 0.97531 0.78687 0.74503 1.93014 1.96551 1.55150 1.72716 1.93279 1.89050 1.93812 1.37596 1.21528 0.99510 1.00680 0.78934 1.20718 0.90825 0.88645 0.95350 0.95412 0.94089 0.93513 0.94310 0.92313 0.92672 0.90074 0.91900 0.91343 0.89140 0.72525 0.85521 0.88241 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.72 10.44 55.49 0.58 -27.14 16 2 C 0.00 -0.09 5.48 -17.43 -0.10 -0.18 16 3 Si 0.89 23.87 29.56 -169.99 -5.03 18.85 16 4 H -0.29 -7.73 7.11 56.52 0.40 -7.32 16 5 H -0.29 -7.96 7.11 56.52 0.40 -7.55 16 6 H -0.27 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.21 -5.95 9.63 -15.06 -0.14 -6.09 16 8 H 0.08 2.30 6.63 -52.49 -0.35 1.95 16 9 N -0.59 -14.31 3.20 -164.42 -0.53 -14.83 16 10 C 0.18 4.16 4.63 -2.74 -0.01 4.15 16 11 C -0.14 -2.52 6.33 -24.32 -0.15 -2.68 16 12 C -0.10 -1.62 3.68 -88.43 -0.33 -1.94 16 13 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.12 -1.82 5.06 -26.51 -0.13 -1.96 16 15 C 0.10 1.36 6.22 -3.51 -0.02 1.34 16 16 N -0.58 -9.87 2.96 -175.31 -0.52 -10.39 16 17 C 0.60 11.14 7.52 -12.83 -0.10 11.04 16 18 O -0.48 -10.40 12.87 5.20 0.07 -10.33 16 19 C -0.04 -0.56 6.77 -36.84 -0.25 -0.81 16 20 O -0.18 -2.17 7.50 4.41 0.03 -2.14 16 21 C 0.19 1.85 13.21 52.25 0.69 2.54 16 22 N -0.47 -6.46 11.21 -10.89 -0.12 -6.58 16 23 C -0.02 -0.37 6.78 -82.47 -0.56 -0.93 16 24 C 0.35 5.76 5.57 36.01 0.20 5.96 16 25 F -0.19 -3.27 17.29 2.25 0.04 -3.23 16 26 F -0.16 -3.29 13.71 2.25 0.03 -3.26 16 27 C 0.12 2.03 5.69 -4.77 -0.03 2.01 16 28 C 0.15 2.93 2.97 -68.30 -0.20 2.72 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.05 1.24 6.92 -51.93 -0.36 0.88 16 32 H 0.04 1.03 7.71 -51.93 -0.40 0.63 16 33 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.58 6.85 -51.93 -0.36 1.22 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.17 4.26 -52.53 -0.22 0.95 16 39 H 0.26 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.10 2.03 5.58 -51.93 -0.29 1.74 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -35.22 338.87 -6.38 -41.60 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -4.91 Total: -2.81 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: -1.13 Total: 15.17 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.59 Total: -58.95 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.10 Total: -12.47 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.07 Total: -6.49 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.03 Total: 18.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.22 -6.38 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042237612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.438 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds