Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30220 * 126.78904 * 2 1 4 4 O 1.20918 * 111.64628 * 180.28086 * 3 2 1 5 5 C 1.34074 * 111.54996 * 359.70778 * 4 3 2 6 6 Cl 1.73604 * 126.79328 * 180.02562 * 5 4 3 7 7 C 1.35670 * 106.40787 * 359.97438 * 5 4 3 8 8 C 1.50699 * 128.01565 * 180.02562 * 7 5 4 9 9 C 1.50695 * 109.47256 * 90.02117 * 8 7 5 10 10 O 1.21282 * 120.00269 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99667 * 180.02562 * 9 8 7 12 12 C 1.46925 * 120.63465 * 354.20536 * 11 9 8 13 13 C 1.53197 * 108.77309 * 126.41449 * 12 11 9 14 14 C 1.53047 * 109.30987 * 54.64224 * 13 12 11 15 15 H 1.09000 * 109.45973 * 178.62764 * 14 13 12 16 16 N 1.46499 * 109.46330 * 58.65168 * 14 13 12 17 17 C 1.36936 * 119.99846 * 84.99946 * 16 14 13 18 18 H 1.08000 * 120.00027 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99760 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00005 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99609 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47106 * 60.00275 * 21 19 17 23 23 H 1.48501 * 109.46860 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47160 * 299.99714 * 21 19 17 25 25 C 1.53045 * 109.53527 * 298.62967 * 14 13 12 26 26 C 1.46935 * 120.62532 * 174.23671 * 11 9 8 27 27 H 1.09001 * 109.58642 * 113.65492 * 26 11 9 28 28 C 1.52994 * 109.58750 * 353.37132 * 26 11 9 29 29 H 1.09000 * 109.47201 * 270.20209 * 1 2 3 30 30 H 1.09006 * 109.47186 * 30.20548 * 1 2 3 31 31 H 1.08997 * 109.47011 * 150.19406 * 1 2 3 32 32 H 1.09006 * 109.46552 * 330.02084 * 8 7 5 33 33 H 1.08996 * 109.47250 * 210.02697 * 8 7 5 34 34 H 1.08994 * 109.58581 * 6.63466 * 12 11 9 35 35 H 1.08996 * 109.58960 * 246.20171 * 12 11 9 36 36 H 1.08995 * 109.49796 * 294.68977 * 13 12 11 37 37 H 1.09000 * 109.52357 * 174.60153 * 13 12 11 38 38 H 0.97002 * 119.99987 * 265.00406 * 16 14 13 39 39 H 0.97004 * 119.99841 * 179.97438 * 20 19 17 40 40 H 1.09005 * 109.49531 * 181.31802 * 25 14 13 41 41 H 1.08998 * 109.49943 * 301.41426 * 25 14 13 42 42 H 1.08993 * 109.47327 * 65.79945 * 28 26 11 43 43 H 1.09001 * 109.46779 * 185.80021 * 28 26 11 44 44 H 1.09003 * 109.47024 * 305.79718 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0429 0.0000 4 8 3.4540 0.7270 -0.0055 5 6 3.6037 -0.6054 -0.0036 6 17 5.1012 -1.4835 -0.0092 7 6 2.3531 -1.1314 0.0046 8 6 1.9581 -2.5857 0.0103 9 6 1.8337 -3.0669 1.4330 10 8 2.0446 -2.3039 2.3518 11 7 1.4881 -4.3451 1.6842 12 6 1.1065 -5.2466 0.5886 13 6 1.9689 -6.5104 0.6671 14 6 1.8384 -7.1263 2.0621 15 1 2.4319 -8.0391 2.1129 16 7 0.4327 -7.4426 2.3265 17 6 -0.0944 -8.6309 1.8960 18 1 0.5264 -9.3350 1.3619 19 6 -1.4265 -8.9305 2.1461 20 7 -2.1829 -8.0726 2.7975 21 14 -2.1453 -10.5518 1.5595 22 1 -1.4017 -11.6767 2.1814 23 1 -3.5760 -10.6290 1.9497 24 1 -2.0294 -10.6387 0.0816 25 6 2.3430 -6.1314 3.1099 26 6 1.4850 -4.8633 3.0591 27 1 0.4637 -5.0983 3.3587 28 6 2.0678 -3.8114 4.0050 29 1 -0.3633 0.0036 1.0276 30 1 -0.3634 0.8882 -0.5170 31 1 -0.3633 -0.8917 -0.5108 32 1 2.7191 -3.1709 -0.5060 33 1 1.0014 -2.7043 -0.4984 34 1 1.2721 -4.7502 -0.3675 35 1 0.0547 -5.5154 0.6859 36 1 3.0110 -6.2520 0.4794 37 1 1.6317 -7.2285 -0.0805 38 1 -0.1248 -6.8103 2.8065 39 1 -3.1139 -8.2817 2.9719 40 1 2.2717 -6.5795 4.1010 41 1 3.3817 -5.8766 2.8992 42 1 1.4072 -2.9450 4.0361 43 1 2.1603 -4.2339 5.0055 44 1 3.0511 -3.5060 3.6472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044776455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = 31.819619 kcal Electronic energy + Delta-G solvation = -28521.603084 eV Core-core repulsion = 24503.637693 eV Total energy + Delta-G solvation = -4017.965392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.14213 -41.54329 -38.91282 -38.25412 -36.48684 -35.79812 -34.28734 -33.63842 -33.07811 -30.86681 -30.02403 -29.45607 -28.19528 -25.71740 -25.15343 -23.91656 -22.68474 -22.48897 -21.15330 -19.67801 -19.14746 -18.93989 -18.74803 -17.71135 -17.18172 -16.74683 -16.40421 -16.22220 -15.64389 -15.42996 -15.03022 -14.77234 -14.62700 -14.46225 -14.29849 -14.16257 -14.04527 -13.66424 -13.49822 -13.44992 -13.29950 -13.02781 -12.94538 -12.81068 -12.78842 -12.58729 -12.41458 -12.14365 -11.95599 -11.91405 -11.89943 -11.57275 -11.34755 -11.05442 -10.84515 -10.41949 -9.96998 -9.45121 -8.91370 -7.86971 -5.13751 -0.02829 0.13730 0.96123 1.52160 1.53385 1.59159 1.67251 2.08756 2.51930 2.61844 2.98597 3.46823 3.47059 3.59476 3.75161 3.83886 3.92807 4.05639 4.07981 4.14870 4.35258 4.40693 4.43228 4.53824 4.55676 4.59814 4.65978 4.72672 4.75491 4.84147 4.88877 4.95495 5.12825 5.14021 5.18445 5.30043 5.31463 5.41879 5.45879 5.61704 5.78203 6.34962 6.57193 6.96924 7.25483 7.42295 8.19066 8.41856 9.36013 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.002937 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.300817 B = 9529.641547 C = 9939.822441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.041 3.959 3 N -0.373 5.373 4 O 0.096 5.904 5 C 0.007 3.993 6 Cl 0.063 6.937 7 C -0.151 4.151 8 C -0.066 4.066 9 C 0.516 3.484 10 O -0.563 6.563 11 N -0.596 5.596 12 C 0.117 3.883 13 C -0.141 4.141 14 C 0.165 3.835 15 H 0.045 0.955 16 N -0.731 5.731 17 C -0.230 4.230 18 H 0.076 0.924 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.964 3.036 22 H -0.284 1.284 23 H -0.303 1.303 24 H -0.277 1.277 25 C -0.122 4.122 26 C 0.149 3.851 27 H 0.049 0.951 28 C -0.120 4.120 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.373 0.627 39 H 0.247 0.753 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.196 13.146 -9.168 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 N -0.082 5.082 4 O 0.032 5.968 5 C -0.083 4.083 6 Cl 0.091 6.909 7 C -0.156 4.156 8 C -0.105 4.105 9 C 0.305 3.695 10 O -0.442 6.442 11 N -0.329 5.329 12 C -0.005 4.005 13 C -0.182 4.182 14 C 0.056 3.944 15 H 0.063 0.937 16 N -0.372 5.372 17 C -0.362 4.362 18 H 0.094 0.906 19 C -0.265 4.265 20 N -0.620 5.620 21 Si 0.794 3.206 22 H -0.210 1.210 23 H -0.229 1.229 24 H -0.203 1.203 25 C -0.161 4.161 26 C 0.046 3.954 27 H 0.067 0.933 28 C -0.177 4.177 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.206 0.794 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.240 14.589 -8.755 20.960 hybrid contribution -0.773 -1.681 0.299 1.874 sum 11.467 12.908 -8.457 19.226 Atomic orbital electron populations 1.20377 0.83542 1.05572 1.04191 1.23749 1.00267 0.87559 1.00217 1.73907 0.88823 1.23784 1.21681 1.84860 1.22158 1.21161 1.68597 1.24712 0.91662 0.84768 1.07150 1.98456 1.27385 1.68483 1.96575 1.20321 0.89907 0.97421 1.07983 1.20164 1.06961 0.88677 0.94731 1.20691 0.76182 0.81184 0.91485 1.90747 1.51761 1.55433 1.46307 1.48154 1.66272 1.10479 1.07964 1.21745 0.99021 0.90326 0.89451 1.22372 0.99787 0.96852 0.99164 1.20449 0.85238 0.95405 0.93263 0.93663 1.42660 1.07290 1.19546 1.67721 1.19554 0.93449 0.95525 1.27672 0.90595 1.25401 0.97412 1.01190 1.02498 1.69797 1.06738 1.37500 1.47960 0.85353 0.76626 0.80413 0.78190 1.21032 1.22938 1.20282 1.22122 0.99521 0.94610 0.99820 1.21058 0.98703 0.93984 0.81645 0.93339 1.22011 1.01530 0.97147 0.97020 0.90055 0.89047 0.87701 0.84940 0.84468 0.86952 0.92874 0.90171 0.91480 0.79395 0.94376 0.91670 0.89880 0.92281 0.93319 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 10.39 71.24 0.74 -0.58 16 2 C 0.04 0.92 7.32 43.55 0.32 1.24 16 3 N -0.37 -9.64 12.07 -49.41 -0.60 -10.24 16 4 O 0.10 2.39 11.20 71.32 0.80 3.19 16 5 C 0.01 0.16 8.12 67.22 0.55 0.71 16 6 Cl 0.06 1.12 29.23 -2.72 -0.08 1.04 16 7 C -0.15 -3.24 4.82 -19.71 -0.10 -3.34 16 8 C -0.07 -1.17 4.46 29.10 0.13 -1.04 16 9 C 0.52 13.26 7.49 87.66 0.66 13.91 16 10 O -0.56 -17.97 11.60 -3.04 -0.04 -18.01 16 11 N -0.60 -16.19 2.97 -795.02 -2.36 -18.56 16 12 C 0.12 2.99 6.09 86.36 0.53 3.52 16 13 C -0.14 -3.84 5.78 30.68 0.18 -3.67 16 14 C 0.16 5.64 3.10 45.02 0.14 5.78 16 15 H 0.05 1.60 8.08 -2.39 -0.02 1.58 16 16 N -0.73 -32.92 4.31 -322.80 -1.39 -34.31 16 17 C -0.23 -11.69 9.93 84.03 0.83 -10.86 16 18 H 0.08 3.69 7.83 -2.91 -0.02 3.67 16 19 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 20 N -0.97 -56.59 13.06 21.65 0.28 -56.30 16 21 Si 0.96 44.02 29.55 68.60 2.03 46.05 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 C -0.12 -3.67 5.07 30.68 0.16 -3.51 16 26 C 0.15 4.69 3.19 44.97 0.14 4.83 16 27 H 0.05 1.84 6.65 -2.39 -0.02 1.82 16 28 C -0.12 -3.62 7.61 71.98 0.55 -3.07 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.10 1.29 7.65 -2.39 -0.02 1.27 16 32 H 0.13 1.77 7.93 -2.38 -0.02 1.75 16 33 H 0.14 1.78 7.21 -2.39 -0.02 1.76 16 34 H 0.11 1.92 5.93 -2.39 -0.01 1.90 16 35 H 0.05 1.76 7.74 -2.39 -0.02 1.75 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.37 18.47 6.07 -92.71 -0.56 17.90 16 39 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 40 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 42 H 0.06 1.98 6.54 -2.39 -0.02 1.96 16 43 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.06 1.77 6.96 -2.39 -0.02 1.76 16 Total: -1.00 -65.42 368.07 4.41 -61.02 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.47 Total: 25.69 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 5.29 Total: 0.43 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -4.07 Total: -119.41 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.76 Total: -14.82 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: 1.12 SS G_CDS: -0.08 Total: 1.04 kcal Total: -65.42 4.41 -61.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044776455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.835 kcal (2) G-P(sol) polarization free energy of solvation -65.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds