Wall clock time and date at job start Sat Apr 11 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30206 * 126.79038 * 2 1 4 4 O 1.20923 * 111.64914 * 179.97438 * 3 2 1 5 5 C 1.34073 * 111.54729 * 359.76546 * 4 3 2 6 6 Cl 1.73602 * 126.79516 * 180.25756 * 5 4 3 7 7 C 1.35670 * 106.40583 * 0.37619 * 5 4 3 8 8 C 1.50703 * 128.01232 * 179.91412 * 7 5 4 9 9 C 1.50694 * 109.47102 * 269.67604 * 8 7 5 10 10 O 1.21286 * 120.00362 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00005 * 179.97438 * 9 8 7 12 12 C 1.46923 * 120.63157 * 354.21460 * 11 9 8 13 13 C 1.53190 * 108.77720 * 126.41218 * 12 11 9 14 14 C 1.53043 * 109.31027 * 54.63657 * 13 12 11 15 15 H 1.09004 * 109.45834 * 58.64238 * 14 13 12 16 16 N 1.46504 * 109.45714 * 178.61227 * 14 13 12 17 17 C 1.36931 * 119.99965 * 275.02546 * 16 14 13 18 18 H 1.07996 * 120.00480 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99763 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99768 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00059 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47434 * 180.02562 * 21 19 17 23 23 H 1.48508 * 109.46792 * 60.00372 * 21 19 17 24 24 H 1.48497 * 109.47446 * 300.00510 * 21 19 17 25 25 C 1.53038 * 109.52541 * 298.62582 * 14 13 12 26 26 C 1.46925 * 120.63259 * 174.23755 * 11 9 8 27 27 H 1.09002 * 109.58974 * 113.65545 * 26 11 9 28 28 C 1.53007 * 109.58469 * 353.37141 * 26 11 9 29 29 H 1.09000 * 109.47071 * 270.03017 * 1 2 3 30 30 H 1.09001 * 109.46741 * 30.02229 * 1 2 3 31 31 H 1.08996 * 109.47493 * 150.02284 * 1 2 3 32 32 H 1.09003 * 109.46975 * 149.67798 * 8 7 5 33 33 H 1.08994 * 109.46810 * 29.67785 * 8 7 5 34 34 H 1.09007 * 109.58363 * 6.62379 * 12 11 9 35 35 H 1.09001 * 109.58779 * 246.20254 * 12 11 9 36 36 H 1.09000 * 109.49903 * 294.68700 * 13 12 11 37 37 H 1.09007 * 109.52204 * 174.60176 * 13 12 11 38 38 H 0.96999 * 119.99568 * 95.02844 * 16 14 13 39 39 H 0.96993 * 120.00606 * 359.97438 * 20 19 17 40 40 H 1.09002 * 109.49709 * 181.32060 * 25 14 13 41 41 H 1.08996 * 109.49993 * 301.42349 * 25 14 13 42 42 H 1.09000 * 109.46646 * 65.80333 * 28 26 11 43 43 H 1.08998 * 109.47224 * 185.79544 * 28 26 11 44 44 H 1.08991 * 109.47339 * 305.79746 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0427 0.0000 4 8 3.4540 0.7269 0.0005 5 6 3.6036 -0.6055 0.0060 6 17 5.1011 -1.4836 0.0149 7 6 2.3531 -1.1315 0.0006 8 6 1.9580 -2.5858 0.0016 9 6 1.8259 -3.0714 -1.4189 10 8 2.0328 -2.3116 -2.3413 11 7 1.4790 -4.3505 -1.6643 12 6 1.3495 -5.3153 -0.5638 13 6 -0.0329 -5.9706 -0.6426 14 6 -0.2278 -6.5753 -2.0349 15 1 0.5565 -7.3078 -2.2257 16 7 -1.5358 -7.2316 -2.1032 17 6 -1.6782 -8.5215 -1.6661 18 1 -0.8264 -9.0548 -1.2706 19 6 -2.9177 -9.1432 -1.7303 20 7 -3.9558 -8.4930 -2.2118 21 14 -3.1119 -10.9030 -1.1347 22 1 -4.5226 -11.3321 -1.3099 23 1 -2.7446 -10.9826 0.3020 24 1 -2.2226 -11.7934 -1.9230 25 6 -0.1577 -5.4672 -3.0882 26 6 1.2235 -4.8066 -3.0374 27 1 1.9868 -5.5271 -3.3311 28 6 1.2546 -3.6093 -3.9896 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5134 32 1 1.0039 -2.7027 0.5157 33 1 2.7216 -3.1694 0.5156 34 1 1.4550 -4.7981 0.3899 35 1 2.1217 -6.0792 -0.6549 36 1 -0.8022 -5.2200 -0.4611 37 1 -0.1069 -6.7566 0.1090 38 1 -2.3009 -6.7525 -2.4581 39 1 -3.8550 -7.5794 -2.5214 40 1 -0.3199 -5.8950 -4.0776 41 1 -0.9258 -4.7214 -2.8833 42 1 2.2626 -3.1957 -4.0202 43 1 0.9641 -3.9325 -4.9892 44 1 0.5595 -2.8471 -3.6379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044776457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:03 Heat of formation + Delta-G solvation = 46.364491 kcal Electronic energy + Delta-G solvation = -28105.897974 eV Core-core repulsion = 24088.563295 eV Total energy + Delta-G solvation = -4017.334679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -45.33358 -40.55143 -37.72911 -37.48233 -35.67650 -34.78770 -33.36731 -32.24869 -32.10958 -29.52781 -29.08259 -28.49340 -26.98135 -24.19741 -23.08572 -23.03742 -21.81563 -21.44291 -20.32660 -19.05230 -18.13271 -17.96208 -17.34607 -16.83594 -16.14327 -16.05356 -15.18779 -14.80177 -14.47216 -14.16582 -13.95325 -13.67177 -13.63056 -13.48196 -13.33909 -13.24271 -13.03688 -12.95951 -12.73201 -12.48001 -12.29800 -12.09354 -11.95452 -11.73964 -11.48274 -11.20664 -10.90330 -10.89386 -10.63502 -10.52095 -10.28087 -10.14987 -10.02986 -9.60697 -9.26974 -9.03235 -8.97563 -8.53268 -7.11559 -6.15925 -3.16813 0.73422 0.92644 1.74910 2.53034 2.94665 3.30047 3.47160 3.50267 3.68050 3.71795 4.19807 4.41018 4.49489 4.60204 4.60524 4.92273 5.02859 5.06040 5.14248 5.18958 5.22594 5.23199 5.32798 5.38032 5.38334 5.46765 5.57023 5.70065 5.75945 5.78640 5.89831 6.00602 6.08125 6.22000 6.30387 6.33964 6.40043 6.62114 6.76450 6.90048 7.40939 7.73745 7.77504 8.13773 8.69450 9.15765 10.02273 10.17161 11.32226 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.002540 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.495806 B =11021.653683 C =11180.076469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.046 3.954 3 N -0.348 5.348 4 O 0.109 5.891 5 C 0.012 3.988 6 Cl 0.047 6.953 7 C -0.146 4.146 8 C -0.071 4.071 9 C 0.517 3.483 10 O -0.529 6.529 11 N -0.602 5.602 12 C 0.105 3.895 13 C -0.151 4.151 14 C 0.184 3.816 15 H 0.049 0.951 16 N -0.735 5.735 17 C -0.333 4.333 18 H 0.064 0.936 19 C -0.044 4.044 20 N -0.943 5.943 21 Si 1.079 2.921 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.295 1.295 25 C -0.135 4.135 26 C 0.149 3.851 27 H 0.071 0.929 28 C -0.136 4.136 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.367 0.633 39 H 0.255 0.745 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.043 0.957 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.749 14.642 6.096 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 N -0.055 5.055 4 O 0.043 5.957 5 C -0.079 4.079 6 Cl 0.076 6.924 7 C -0.151 4.151 8 C -0.112 4.112 9 C 0.305 3.695 10 O -0.407 6.407 11 N -0.336 5.336 12 C -0.018 4.018 13 C -0.192 4.192 14 C 0.074 3.926 15 H 0.067 0.933 16 N -0.377 5.377 17 C -0.463 4.463 18 H 0.082 0.918 19 C -0.242 4.242 20 N -0.588 5.588 21 Si 0.909 3.091 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.223 1.223 25 C -0.175 4.175 26 C 0.046 3.954 27 H 0.089 0.911 28 C -0.193 4.193 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.200 0.800 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.849 14.861 5.869 21.812 hybrid contribution 1.056 0.378 -0.132 1.129 sum 15.905 15.240 5.737 22.762 Atomic orbital electron populations 1.20242 0.85149 1.04537 1.03673 1.23253 0.99105 0.87659 1.01247 1.73919 0.88459 1.22853 1.20247 1.84905 1.22169 1.20509 1.68144 1.24455 0.90761 0.85001 1.07643 1.98453 1.28305 1.69007 1.96684 1.20120 0.90046 0.96829 1.08108 1.20097 1.04933 0.89418 0.96713 1.20222 0.77069 0.81790 0.90450 1.90763 1.49745 1.55542 1.44624 1.48204 1.67827 1.09133 1.08395 1.21907 0.99329 0.91826 0.88737 1.22661 0.94170 1.00242 1.02111 1.20097 0.89733 0.91838 0.90951 0.93326 1.42437 1.05411 1.13382 1.76449 1.20016 0.97231 0.90139 1.38962 0.91752 1.25765 0.91603 1.06001 1.00815 1.70882 1.30897 1.12540 1.44473 0.83260 0.75884 0.74433 0.75483 1.21042 1.22250 1.22260 1.22312 0.95707 0.98533 1.00899 1.21292 0.96981 0.96619 0.80523 0.91072 1.22183 1.04065 0.96312 0.96723 0.89625 0.89998 0.89646 0.86799 0.87317 0.90373 0.91166 0.92283 0.90496 0.80028 0.93356 0.90715 0.91941 0.90593 0.93773 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.39 36.01 0.37 -0.31 16 2 C 0.05 0.52 7.32 -82.12 -0.60 -0.08 16 3 N -0.35 -4.40 12.07 33.44 0.40 -4.00 16 4 O 0.11 1.32 11.20 17.09 0.19 1.51 16 5 C 0.01 0.13 8.12 29.81 0.24 0.37 16 6 Cl 0.05 0.42 29.23 -51.86 -1.52 -1.09 16 7 C -0.15 -1.58 4.82 -104.38 -0.50 -2.09 16 8 C -0.07 -0.67 4.46 -29.04 -0.13 -0.80 16 9 C 0.52 6.38 7.49 -10.99 -0.08 6.30 16 10 O -0.53 -7.99 11.60 5.55 0.06 -7.93 16 11 N -0.60 -7.42 2.97 -165.22 -0.49 -7.91 16 12 C 0.11 1.18 6.35 -3.71 -0.02 1.15 16 13 C -0.15 -2.29 5.66 -26.61 -0.15 -2.44 16 14 C 0.18 3.33 2.73 -67.89 -0.19 3.15 16 15 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 16 N -0.74 -17.33 5.12 -53.38 -0.27 -17.61 16 17 C -0.33 -8.88 9.93 -15.06 -0.15 -9.03 16 18 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 19 C -0.04 -1.24 5.50 -17.43 -0.10 -1.33 16 20 N -0.94 -28.43 13.70 55.49 0.76 -27.67 16 21 Si 1.08 25.07 29.92 -169.99 -5.09 19.99 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.30 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.14 -2.12 4.84 -26.61 -0.13 -2.25 16 26 C 0.15 2.01 3.49 -67.60 -0.24 1.77 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 C -0.14 -1.85 7.61 37.16 0.28 -1.57 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.11 0.87 7.93 -51.93 -0.41 0.46 16 33 H 0.11 0.80 7.70 -51.93 -0.40 0.40 16 34 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.37 9.07 6.63 -40.82 -0.27 8.80 16 39 H 0.26 7.57 6.77 -40.82 -0.28 7.30 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.10 6.54 -51.93 -0.34 0.76 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.93 6.96 -51.93 -0.36 0.57 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -32.12 371.63 -7.95 -40.08 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.22 Total: 6.18 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.39 Total: -7.15 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.40 Total: -57.18 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: 0.26 Total: -6.42 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.09 Total: 19.99 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -1.52 Total: -1.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.12 -7.95 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044776457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.441 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds