Wall clock time and date at job start Sat Apr 11 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30206 * 126.79038 * 2 1 4 4 O 1.20923 * 111.64914 * 179.97438 * 3 2 1 5 5 C 1.34073 * 111.54729 * 359.76546 * 4 3 2 6 6 Cl 1.73602 * 126.79516 * 180.25756 * 5 4 3 7 7 C 1.35670 * 106.40583 * 0.37619 * 5 4 3 8 8 C 1.50703 * 128.01232 * 179.91412 * 7 5 4 9 9 C 1.50694 * 109.47102 * 269.67604 * 8 7 5 10 10 O 1.21286 * 120.00362 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00005 * 179.97438 * 9 8 7 12 12 C 1.46923 * 120.63157 * 354.21460 * 11 9 8 13 13 C 1.53190 * 108.77720 * 126.41218 * 12 11 9 14 14 C 1.53043 * 109.31027 * 54.63657 * 13 12 11 15 15 H 1.09004 * 109.45834 * 58.64238 * 14 13 12 16 16 N 1.46504 * 109.45714 * 178.61227 * 14 13 12 17 17 C 1.36931 * 119.99965 * 275.02546 * 16 14 13 18 18 H 1.07996 * 120.00480 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99763 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99768 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00059 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47434 * 180.02562 * 21 19 17 23 23 H 1.48508 * 109.46792 * 60.00372 * 21 19 17 24 24 H 1.48497 * 109.47446 * 300.00510 * 21 19 17 25 25 C 1.53038 * 109.52541 * 298.62582 * 14 13 12 26 26 C 1.46925 * 120.63259 * 174.23755 * 11 9 8 27 27 H 1.09002 * 109.58974 * 113.65545 * 26 11 9 28 28 C 1.53007 * 109.58469 * 353.37141 * 26 11 9 29 29 H 1.09000 * 109.47071 * 270.03017 * 1 2 3 30 30 H 1.09001 * 109.46741 * 30.02229 * 1 2 3 31 31 H 1.08996 * 109.47493 * 150.02284 * 1 2 3 32 32 H 1.09003 * 109.46975 * 149.67798 * 8 7 5 33 33 H 1.08994 * 109.46810 * 29.67785 * 8 7 5 34 34 H 1.09007 * 109.58363 * 6.62379 * 12 11 9 35 35 H 1.09001 * 109.58779 * 246.20254 * 12 11 9 36 36 H 1.09000 * 109.49903 * 294.68700 * 13 12 11 37 37 H 1.09007 * 109.52204 * 174.60176 * 13 12 11 38 38 H 0.96999 * 119.99568 * 95.02844 * 16 14 13 39 39 H 0.96993 * 120.00606 * 359.97438 * 20 19 17 40 40 H 1.09002 * 109.49709 * 181.32060 * 25 14 13 41 41 H 1.08996 * 109.49993 * 301.42349 * 25 14 13 42 42 H 1.09000 * 109.46646 * 65.80333 * 28 26 11 43 43 H 1.08998 * 109.47224 * 185.79544 * 28 26 11 44 44 H 1.08991 * 109.47339 * 305.79746 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0427 0.0000 4 8 3.4540 0.7269 0.0005 5 6 3.6036 -0.6055 0.0060 6 17 5.1011 -1.4836 0.0149 7 6 2.3531 -1.1315 0.0006 8 6 1.9580 -2.5858 0.0016 9 6 1.8259 -3.0714 -1.4189 10 8 2.0328 -2.3116 -2.3413 11 7 1.4790 -4.3505 -1.6643 12 6 1.3495 -5.3153 -0.5638 13 6 -0.0329 -5.9706 -0.6426 14 6 -0.2278 -6.5753 -2.0349 15 1 0.5565 -7.3078 -2.2257 16 7 -1.5358 -7.2316 -2.1032 17 6 -1.6782 -8.5215 -1.6661 18 1 -0.8264 -9.0548 -1.2706 19 6 -2.9177 -9.1432 -1.7303 20 7 -3.9558 -8.4930 -2.2118 21 14 -3.1119 -10.9030 -1.1347 22 1 -4.5226 -11.3321 -1.3099 23 1 -2.7446 -10.9826 0.3020 24 1 -2.2226 -11.7934 -1.9230 25 6 -0.1577 -5.4672 -3.0882 26 6 1.2235 -4.8066 -3.0374 27 1 1.9868 -5.5271 -3.3311 28 6 1.2546 -3.6093 -3.9896 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5134 32 1 1.0039 -2.7027 0.5157 33 1 2.7216 -3.1694 0.5156 34 1 1.4550 -4.7981 0.3899 35 1 2.1217 -6.0792 -0.6549 36 1 -0.8022 -5.2200 -0.4611 37 1 -0.1069 -6.7566 0.1090 38 1 -2.3009 -6.7525 -2.4581 39 1 -3.8550 -7.5794 -2.5214 40 1 -0.3199 -5.8950 -4.0776 41 1 -0.9258 -4.7214 -2.8833 42 1 2.2626 -3.1957 -4.0202 43 1 0.9641 -3.9325 -4.9892 44 1 0.5595 -2.8471 -3.6379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044776457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:02 Heat of formation + Delta-G solvation = 27.139785 kcal Electronic energy + Delta-G solvation = -28106.731620 eV Core-core repulsion = 24088.563295 eV Total energy + Delta-G solvation = -4018.168325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.17440 -41.59212 -38.91346 -38.28591 -36.62031 -36.30525 -34.38234 -33.78542 -33.13698 -30.89405 -30.01823 -29.44716 -28.21790 -25.83844 -24.58086 -24.01222 -22.67511 -22.46118 -21.64721 -20.12446 -19.29838 -18.98957 -18.79586 -17.81470 -17.17159 -16.99349 -16.68689 -16.02320 -15.77934 -15.40263 -15.34323 -15.02078 -14.64873 -14.51235 -14.29281 -14.15490 -14.09904 -13.70421 -13.48940 -13.42798 -13.35057 -13.22373 -13.08448 -12.82232 -12.73408 -12.58294 -12.39522 -12.05630 -11.99224 -11.93338 -11.86391 -11.60550 -11.17109 -11.07582 -10.85794 -10.46238 -10.05126 -9.60434 -9.08803 -8.34349 -5.28791 -0.05342 0.10582 0.92629 1.59227 1.61137 1.70451 1.86302 1.98861 2.48736 2.74256 2.94711 3.42690 3.43751 3.50996 3.63021 3.72218 3.77490 3.92595 4.00648 4.08352 4.22017 4.30119 4.36475 4.50675 4.53563 4.57907 4.59810 4.61296 4.65413 4.69078 4.76836 4.80850 4.98022 5.02364 5.08996 5.12561 5.23735 5.37480 5.49029 5.64384 5.67650 6.44149 6.53249 6.94450 7.13121 7.17465 8.03207 8.15862 9.17521 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.002540 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.495806 B =11021.653683 C =11180.076469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.040 3.960 3 N -0.373 5.373 4 O 0.096 5.904 5 C 0.007 3.993 6 Cl 0.064 6.936 7 C -0.152 4.152 8 C -0.067 4.067 9 C 0.517 3.483 10 O -0.559 6.559 11 N -0.603 5.603 12 C 0.113 3.887 13 C -0.140 4.140 14 C 0.177 3.823 15 H 0.043 0.957 16 N -0.750 5.750 17 C -0.323 4.323 18 H 0.070 0.930 19 C -0.107 4.107 20 N -0.980 5.980 21 Si 1.125 2.875 22 H -0.298 1.298 23 H -0.275 1.275 24 H -0.279 1.279 25 C -0.123 4.123 26 C 0.154 3.846 27 H 0.081 0.919 28 C -0.123 4.123 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.356 0.644 39 H 0.243 0.757 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.419 14.189 7.639 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 N -0.082 5.082 4 O 0.032 5.968 5 C -0.083 4.083 6 Cl 0.092 6.908 7 C -0.157 4.157 8 C -0.107 4.107 9 C 0.306 3.694 10 O -0.438 6.438 11 N -0.336 5.336 12 C -0.010 4.010 13 C -0.181 4.181 14 C 0.069 3.931 15 H 0.062 0.938 16 N -0.392 5.392 17 C -0.454 4.454 18 H 0.088 0.912 19 C -0.298 4.298 20 N -0.628 5.628 21 Si 0.950 3.050 22 H -0.225 1.225 23 H -0.201 1.201 24 H -0.206 1.206 25 C -0.162 4.162 26 C 0.051 3.949 27 H 0.099 0.901 28 C -0.181 4.181 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.135 0.865 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.188 0.812 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.602 14.430 7.434 23.219 hybrid contribution 0.623 0.569 -0.655 1.068 sum 17.225 14.999 6.779 23.825 Atomic orbital electron populations 1.20351 0.83649 1.04530 1.05064 1.23734 1.00202 0.87629 1.00255 1.73914 0.88838 1.23806 1.21642 1.84868 1.22126 1.21214 1.68565 1.24726 0.91683 0.84787 1.07074 1.98457 1.27351 1.68441 1.96564 1.20326 0.89831 0.97461 1.08121 1.20195 1.07069 0.88630 0.94813 1.20691 0.76074 0.81174 0.91451 1.90763 1.50971 1.56130 1.45984 1.48225 1.67780 1.09574 1.08001 1.21963 0.96781 0.92195 0.90024 1.22425 0.96785 0.99743 0.99123 1.20372 0.86952 0.92253 0.93556 0.93848 1.42683 1.07096 1.12895 1.76484 1.20358 0.97039 0.91236 1.36767 0.91197 1.27109 0.91787 1.09344 1.01592 1.70992 1.32092 1.12406 1.47355 0.82659 0.75296 0.70714 0.76335 1.22452 1.20081 1.20564 1.22147 0.97054 0.97482 0.99499 1.21159 0.95571 0.96543 0.81643 0.90077 1.22028 1.03180 0.95793 0.97051 0.87467 0.90053 0.89563 0.84468 0.84663 0.86509 0.89654 0.93054 0.91682 0.81214 0.94639 0.91778 0.92862 0.91197 0.93204 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.39 71.24 0.74 -0.49 16 2 C 0.04 0.86 7.32 43.55 0.32 1.18 16 3 N -0.37 -9.20 12.07 -49.43 -0.60 -9.80 16 4 O 0.10 2.26 11.20 71.32 0.80 3.06 16 5 C 0.01 0.15 8.12 67.22 0.55 0.70 16 6 Cl 0.06 1.01 29.23 -2.72 -0.08 0.93 16 7 C -0.15 -2.97 4.82 -19.71 -0.10 -3.07 16 8 C -0.07 -1.02 4.46 29.10 0.13 -0.89 16 9 C 0.52 11.37 7.49 87.65 0.66 12.03 16 10 O -0.56 -16.01 11.60 -3.05 -0.04 -16.05 16 11 N -0.60 -13.18 2.97 -795.01 -2.36 -15.54 16 12 C 0.11 2.10 6.35 86.36 0.55 2.65 16 13 C -0.14 -3.96 5.66 30.67 0.17 -3.79 16 14 C 0.18 6.24 2.73 45.02 0.12 6.37 16 15 H 0.04 1.58 8.08 -2.38 -0.02 1.56 16 16 N -0.75 -35.58 5.12 -322.80 -1.65 -37.24 16 17 C -0.32 -17.15 9.93 84.03 0.83 -16.31 16 18 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 19 C -0.11 -6.04 5.50 84.86 0.47 -5.57 16 20 N -0.98 -60.27 13.70 21.65 0.30 -59.97 16 21 Si 1.12 50.21 29.92 68.60 2.05 52.26 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 25 C -0.12 -3.77 4.84 30.67 0.15 -3.62 16 26 C 0.15 3.91 3.49 44.98 0.16 4.07 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 C -0.12 -3.25 7.61 71.98 0.55 -2.70 16 29 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.14 1.49 7.93 -2.39 -0.02 1.47 16 33 H 0.14 1.35 7.70 -2.39 -0.02 1.33 16 34 H 0.12 1.35 5.93 -2.38 -0.01 1.33 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.36 18.12 6.63 -92.71 -0.61 17.51 16 39 H 0.24 14.92 6.77 -92.71 -0.63 14.29 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.96 6.54 -2.39 -0.02 1.94 16 43 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.05 1.38 6.96 -2.39 -0.02 1.36 16 Total: -1.00 -70.74 371.63 4.27 -66.46 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.56 Total: 25.34 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 5.30 Total: -9.46 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -4.32 Total: -122.55 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.76 Total: -12.99 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Atomic # 17 Polarization: 1.01 SS G_CDS: -0.08 Total: 0.93 kcal Total: -70.74 4.27 -66.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044776457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.602 kcal (2) G-P(sol) polarization free energy of solvation -70.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds