Wall clock time and date at job start Sat Apr 11 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99987 * 2 1 4 4 H 1.48504 * 109.47467 * 239.99902 * 3 2 1 5 5 H 1.48505 * 109.47333 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46886 * 119.99875 * 3 2 1 7 7 C 1.38815 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99912 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99678 * 359.97438 * 7 2 1 10 10 C 1.47128 * 125.77171 * 359.97438 * 9 7 2 11 11 C 1.54565 * 107.25578 * 182.61820 * 10 9 7 12 12 C 1.54423 * 102.44914 * 21.66540 * 11 10 9 13 13 H 1.09003 * 110.71903 * 80.56428 * 12 11 10 14 14 C 1.48212 * 125.76815 * 180.02562 * 9 7 2 15 15 H 1.09003 * 111.52765 * 33.83811 * 14 9 7 16 16 C 1.53020 * 107.91421 * 271.19135 * 14 9 7 17 17 C 1.52734 * 110.79715 * 191.49397 * 16 14 9 18 18 C 1.53625 * 107.63238 * 64.94414 * 17 16 14 19 19 N 1.45117 * 111.60576 * 203.42554 * 12 11 10 20 20 C 1.34783 * 119.57049 * 248.63114 * 19 12 11 21 21 O 1.21692 * 119.99673 * 177.10520 * 20 19 12 22 22 C 1.46712 * 120.00260 * 357.38123 * 20 19 12 23 23 O 1.35345 * 126.64667 * 352.15000 * 22 20 19 24 24 C 1.33666 * 107.68612 * 179.83669 * 23 22 20 25 25 N 1.30620 * 109.15238 * 0.43062 * 24 23 22 26 26 C 1.33693 * 108.99652 * 359.73225 * 25 24 23 27 27 C 1.50693 * 126.27201 * 180.02562 * 26 25 24 28 28 F 1.39902 * 109.47220 * 29.96993 * 27 26 25 29 29 F 1.39898 * 109.47313 * 149.97486 * 27 26 25 30 30 H 0.96999 * 120.00097 * 0.02562 * 1 2 3 31 31 H 1.08992 * 109.87942 * 302.03197 * 10 9 7 32 32 H 1.09004 * 109.88071 * 63.20590 * 10 9 7 33 33 H 1.08997 * 110.81099 * 263.43007 * 11 10 9 34 34 H 1.08996 * 110.81238 * 139.90498 * 11 10 9 35 35 H 1.08996 * 109.21128 * 311.83125 * 16 14 9 36 36 H 1.08995 * 109.21232 * 71.15526 * 16 14 9 37 37 H 1.09004 * 109.64610 * 183.45683 * 17 16 14 38 38 H 1.08999 * 109.64359 * 303.87316 * 17 16 14 39 39 H 1.09000 * 108.94845 * 181.64741 * 18 17 16 40 40 H 1.09000 * 111.18219 * 60.40884 * 18 17 16 41 41 H 1.08001 * 125.41880 * 180.18240 * 24 23 22 42 42 H 1.09007 * 109.47443 * 269.97274 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1382 -2.5359 0.0005 11 6 -0.4461 -4.0491 0.0675 12 6 0.8587 -4.6286 0.6559 13 1 0.8825 -4.5037 1.7385 14 6 1.9339 -3.7396 -0.0005 15 1 2.8661 -3.7587 0.5641 16 6 2.1546 -4.1564 -1.4562 17 6 2.5117 -5.6386 -1.5478 18 6 1.2933 -6.4413 -1.0671 19 7 1.0227 -6.0296 0.3148 20 6 0.9316 -6.9645 1.2813 21 8 1.0152 -8.1446 0.9961 22 6 0.7254 -6.5598 2.6764 23 8 0.7554 -5.2978 3.1643 24 6 0.5168 -5.3644 4.4778 25 7 0.3504 -6.6138 4.8203 26 6 0.4721 -7.3829 3.7335 27 6 0.3510 -8.8842 3.6856 28 9 -0.5299 -9.3131 4.6842 29 9 -0.1382 -9.2729 2.4338 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5610 -2.0327 0.8700 32 1 -0.5542 -2.1131 -0.9140 33 1 -0.6336 -4.4506 -0.9283 34 1 -1.2895 -4.2438 0.7299 35 1 1.2431 -3.9713 -2.0245 36 1 2.9666 -3.5650 -1.8794 37 1 2.7246 -5.9009 -2.5841 38 1 3.3867 -5.8434 -0.9309 39 1 1.5355 -7.5036 -1.0959 40 1 0.4206 -6.2432 -1.6895 41 1 0.4729 -4.5199 5.1496 42 1 1.3308 -9.3332 3.8481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049717925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:08 Heat of formation + Delta-G solvation = -74.531592 kcal Electronic energy + Delta-G solvation = -31581.235466 eV Core-core repulsion = 27006.861659 eV Total energy + Delta-G solvation = -4574.373807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.99890 -48.00983 -44.78767 -41.63557 -39.64810 -36.82497 -36.34236 -34.23343 -33.98895 -32.32069 -30.83508 -29.89237 -28.21788 -26.48885 -26.10259 -24.55711 -23.88314 -22.82236 -22.07714 -21.78911 -20.42101 -19.13218 -18.84409 -18.59796 -18.23356 -18.09611 -17.81460 -17.23127 -16.88183 -16.72807 -16.24003 -15.97045 -15.66768 -15.36166 -15.09075 -14.90611 -14.76849 -14.40564 -14.31254 -14.18251 -13.94806 -13.63651 -13.48595 -13.14657 -12.89918 -12.78637 -12.61872 -12.43587 -12.40144 -12.29084 -12.20422 -12.05619 -11.86674 -11.64559 -11.50716 -11.36574 -11.05752 -10.68036 -10.44304 -9.73454 -8.88322 -7.81860 -5.17299 -0.55202 1.09721 1.14971 1.49416 1.50728 1.57060 1.71072 1.85829 2.30402 2.51261 2.94773 3.08470 3.16417 3.36226 3.57982 3.74299 3.79888 3.82891 3.96119 3.97676 4.06359 4.11429 4.14016 4.29598 4.40115 4.54850 4.58168 4.65535 4.73012 4.79321 4.94580 5.01649 5.06254 5.12148 5.34079 5.43321 5.46465 5.56452 5.63963 5.76158 6.03544 6.19441 6.26098 6.75339 7.11582 7.77377 8.42082 9.27728 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003707 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.892859 B = 7551.146153 C = 8623.161362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.613 5.613 10 C 0.194 3.806 11 C -0.137 4.137 12 C 0.119 3.881 13 H 0.120 0.880 14 C 0.155 3.845 15 H 0.058 0.942 16 C -0.125 4.125 17 C -0.119 4.119 18 C 0.111 3.889 19 N -0.576 5.576 20 C 0.593 3.407 21 O -0.517 6.517 22 C -0.077 4.077 23 O -0.177 6.177 24 C 0.225 3.775 25 N -0.494 5.494 26 C -0.015 4.015 27 C 0.353 3.647 28 F -0.197 7.197 29 F -0.181 7.181 30 H 0.246 0.754 31 H 0.021 0.979 32 H 0.007 0.993 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.305 0.695 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -15.015 5.060 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.252 4.252 3 Si 0.801 3.199 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.363 4.363 8 H 0.100 0.900 9 N -0.338 5.338 10 C 0.068 3.932 11 C -0.176 4.176 12 C 0.015 3.985 13 H 0.137 0.863 14 C 0.047 3.953 15 H 0.076 0.924 16 C -0.165 4.165 17 C -0.157 4.157 18 C -0.009 4.009 19 N -0.306 5.306 20 C 0.380 3.620 21 O -0.395 6.395 22 C -0.133 4.133 23 O -0.064 6.064 24 C 0.001 3.999 25 N -0.221 5.221 26 C -0.139 4.139 27 C 0.299 3.701 28 F -0.179 7.179 29 F -0.162 7.162 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.025 0.975 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.320 0.680 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.804 -15.563 5.459 16.729 hybrid contribution 0.031 1.892 -0.626 1.993 sum 2.835 -13.671 4.832 14.774 Atomic orbital electron populations 1.70140 1.06150 1.25239 1.58295 1.25512 0.96424 1.00560 1.02726 0.85256 0.77177 0.79353 0.78144 1.20687 1.22418 1.20253 1.19323 0.90880 0.83319 1.42803 0.90014 1.44879 1.01855 1.00337 1.86750 1.20847 0.84023 0.90161 0.98156 1.22970 0.96883 0.96544 1.01238 1.22311 0.96000 0.78902 1.01332 0.86327 1.21481 0.94434 0.84374 0.94975 0.92421 1.21972 1.01008 0.96034 0.97438 1.21893 0.97107 0.93710 1.03012 1.22016 0.98428 1.00965 0.79539 1.47539 1.68200 1.05982 1.08894 1.16654 0.77906 0.85654 0.81811 1.90929 1.51542 1.15956 1.81073 1.22937 1.12075 0.82189 0.96124 1.84814 1.67343 1.28688 1.25536 1.29732 0.91994 0.97431 0.80730 1.70294 1.20249 1.02537 1.29014 1.22671 1.03834 0.98260 0.89168 1.19736 0.93018 0.85343 0.72024 1.93009 1.72824 1.90479 1.61552 1.93131 1.90048 1.91292 1.41776 0.94475 0.96113 0.97483 0.90790 0.90908 0.93152 0.93098 0.88392 0.91030 0.87879 0.89962 0.68020 0.81708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.29 10.33 21.65 0.22 -54.06 16 2 C -0.06 -3.17 5.49 84.86 0.47 -2.70 16 3 Si 0.97 43.63 29.55 68.60 2.03 45.66 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.23 -12.20 10.29 84.03 0.87 -11.33 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 9 N -0.61 -28.69 2.95 -667.08 -1.97 -30.66 16 10 C 0.19 8.90 5.24 86.79 0.45 9.36 16 11 C -0.14 -4.77 6.10 31.61 0.19 -4.58 16 12 C 0.12 3.82 3.00 46.13 0.14 3.95 16 13 H 0.12 3.87 3.68 -62.00 -0.23 3.64 16 14 C 0.15 5.65 3.54 45.07 0.16 5.81 16 15 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 16 C -0.12 -3.97 5.12 30.51 0.16 -3.82 16 17 C -0.12 -2.77 6.14 30.72 0.19 -2.58 16 18 C 0.11 2.66 6.13 86.55 0.53 3.19 16 19 N -0.58 -16.19 2.71 -798.98 -2.17 -18.36 16 20 C 0.59 17.18 7.50 86.46 0.65 17.83 16 21 O -0.52 -15.95 12.70 -4.32 -0.05 -16.01 16 22 C -0.08 -2.08 6.81 24.04 0.16 -1.92 16 23 O -0.18 -4.45 7.24 -7.12 -0.05 -4.50 16 24 C 0.23 4.29 13.21 130.42 1.72 6.01 16 25 N -0.49 -11.77 11.21 -303.12 -3.40 -15.17 16 26 C -0.01 -0.37 6.78 41.83 0.28 -0.09 16 27 C 0.35 8.16 5.57 71.23 0.40 8.56 16 28 F -0.20 -4.96 17.29 44.97 0.78 -4.18 16 29 F -0.18 -5.09 13.69 44.97 0.62 -4.48 16 30 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 31 H 0.02 1.07 7.30 -2.39 -0.02 1.05 16 32 H 0.01 0.37 7.60 -2.38 -0.02 0.35 16 33 H 0.07 2.42 6.86 -2.39 -0.02 2.41 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.05 1.74 7.20 -2.39 -0.02 1.73 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.10 2.32 6.96 -2.39 -0.02 2.31 16 40 H 0.08 1.88 7.54 -2.39 -0.02 1.86 16 41 H 0.31 2.40 8.06 -2.91 -0.02 2.37 16 42 H 0.17 2.59 8.14 -2.38 -0.02 2.57 16 Total: -1.00 -67.99 340.09 3.23 -64.76 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.86 Total: 9.32 kcal Atomic # 6 Polarization: 21.32 SS G_CDS: 6.37 Total: 27.68 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -7.31 Total: -118.25 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.11 Total: -20.51 kcal Atomic # 9 Polarization: -10.05 SS G_CDS: 1.39 Total: -8.66 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.99 3.23 -64.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049717925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.770 kcal (2) G-P(sol) polarization free energy of solvation -67.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds