Wall clock time and date at job start Sat Apr 11 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99961 * 2 1 4 4 H 1.48501 * 109.47357 * 94.71265 * 3 2 1 5 5 H 1.48500 * 109.47158 * 214.71953 * 3 2 1 6 6 H 1.48502 * 109.46857 * 334.71129 * 3 2 1 7 7 C 1.38807 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99953 * 19.52900 * 7 2 1 9 9 N 1.36940 * 120.00031 * 199.51956 * 7 2 1 10 10 C 1.47504 * 118.75830 * 27.34861 * 9 7 2 11 11 C 1.53944 * 110.82088 * 138.24737 * 10 9 7 12 12 C 1.51530 * 109.73006 * 320.30637 * 11 10 9 13 13 O 1.42156 * 108.76619 * 91.29410 * 12 11 10 14 14 C 1.38017 * 119.43948 * 272.78514 * 13 12 11 15 15 H 1.09004 * 109.46107 * 303.42432 * 14 13 12 16 16 C 1.52989 * 109.47167 * 183.43212 * 14 13 12 17 17 N 1.46504 * 109.47307 * 64.98288 * 16 14 13 18 18 C 1.34776 * 119.99979 * 179.97438 * 17 16 14 19 19 O 1.21555 * 120.00071 * 0.02562 * 18 17 16 20 20 C 1.47879 * 120.00034 * 180.02562 * 18 17 16 21 21 N 1.32840 * 119.72024 * 359.97438 * 20 18 17 22 22 C 1.31368 * 121.68786 * 179.97438 * 21 20 18 23 23 C 1.38995 * 120.93344 * 359.97438 * 22 21 20 24 24 F 1.35101 * 120.32848 * 179.97438 * 23 22 21 25 25 C 1.38716 * 119.34546 * 0.02562 * 23 22 21 26 26 C 1.38840 * 118.44703 * 359.73588 * 25 23 22 27 27 F 1.35096 * 120.48614 * 180.28985 * 26 25 23 28 28 C 1.45128 * 118.75596 * 207.61094 * 9 7 2 29 29 H 0.96998 * 120.00303 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.16789 * 258.77024 * 10 9 7 31 31 H 1.09006 * 109.16283 * 17.97032 * 10 9 7 32 32 H 1.09002 * 109.45852 * 200.17415 * 11 10 9 33 33 H 1.09007 * 109.29545 * 80.33557 * 11 10 9 34 34 H 1.09000 * 109.58984 * 331.51054 * 12 11 10 35 35 H 1.09003 * 109.59120 * 211.07605 * 12 11 10 36 36 H 1.09001 * 109.47565 * 184.98515 * 16 14 13 37 37 H 1.09003 * 109.47344 * 304.98475 * 16 14 13 38 38 H 0.96989 * 119.99951 * 0.02562 * 17 16 14 39 39 H 1.08003 * 119.53304 * 179.97438 * 22 21 20 40 40 H 1.07995 * 120.77842 * 179.97438 * 25 23 22 41 41 H 1.08994 * 109.45995 * 29.30935 * 28 9 7 42 42 H 1.08998 * 109.46046 * 149.27769 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5973 1.9890 1.3953 5 1 3.4943 1.4711 -0.7974 6 1 1.4013 2.6794 -0.5981 7 6 2.0102 -1.2021 0.0005 8 1 1.5169 -2.1106 -0.3117 9 7 3.3206 -1.2359 0.3968 10 6 3.7991 -0.2203 1.3535 11 6 4.7220 -0.8552 2.4095 12 6 4.1768 -2.2088 2.8179 13 8 4.7527 -3.2046 1.9827 14 6 4.1530 -3.5090 0.7775 15 1 3.1181 -3.8041 0.9511 16 6 4.9065 -4.6608 0.1095 17 7 4.7730 -5.8702 0.9256 18 6 5.3585 -7.0179 0.5302 19 8 5.9977 -7.0496 -0.5032 20 6 5.2233 -8.2388 1.3537 21 7 4.5239 -8.1978 2.4823 22 6 4.3785 -9.2589 3.2430 23 6 4.9552 -10.4740 2.8921 24 9 4.7982 -11.5575 3.6837 25 6 5.6943 -10.5629 1.7216 26 6 5.8268 -9.4264 0.9352 27 9 6.5327 -9.4679 -0.2159 28 6 4.1874 -2.2662 -0.1448 29 1 -0.4850 0.8400 -0.0004 30 1 4.3464 0.5515 0.8123 31 1 2.9425 0.2329 1.8526 32 1 4.7740 -0.2060 3.2836 33 1 5.7201 -0.9777 1.9888 34 1 3.0931 -2.2165 2.7017 35 1 4.4364 -2.4089 3.8574 36 1 4.4885 -4.8427 -0.8806 37 1 5.9607 -4.3999 0.0164 38 1 4.2627 -5.8450 1.7500 39 1 3.8027 -9.1862 4.1538 40 1 6.1528 -11.4952 1.4270 41 1 3.8431 -2.5437 -1.1410 42 1 5.2076 -1.8873 -0.2058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073662366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:49 Heat of formation + Delta-G solvation = -95.177943 kcal Electronic energy + Delta-G solvation = -29548.140923 eV Core-core repulsion = 24972.871823 eV Total energy + Delta-G solvation = -4575.269100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.71491 -49.42900 -40.83762 -39.47816 -38.75318 -35.57141 -34.79669 -33.14484 -32.35540 -31.77825 -31.38628 -28.87909 -26.50679 -25.63484 -24.93343 -24.15420 -22.59393 -21.10262 -20.89476 -20.15757 -18.81708 -18.67766 -18.26083 -17.10453 -16.83844 -16.48443 -16.23842 -16.02632 -15.91457 -15.78225 -15.45149 -15.04447 -14.97359 -14.71170 -14.46055 -13.99809 -13.87490 -13.61878 -13.51153 -13.29415 -12.97304 -12.75579 -12.46704 -12.16337 -11.90073 -11.59985 -11.27901 -11.15660 -10.78530 -10.63420 -10.47743 -10.16761 -10.14317 -10.00095 -9.85739 -9.53786 -9.53024 -9.02643 -8.97007 -8.66570 -7.04373 -6.03258 -3.43274 -0.19394 0.25449 2.26074 2.78032 3.12748 3.20227 3.26174 3.42647 3.43916 3.45815 3.58541 3.94848 4.02288 4.14796 4.45472 4.48157 4.78460 4.83879 5.02237 5.12748 5.27161 5.32047 5.42489 5.50537 5.61182 5.79883 5.83112 5.86933 5.92624 6.05035 6.09879 6.28733 6.35426 6.41900 6.46285 6.53439 6.70511 6.72502 6.87094 7.46508 7.89238 8.04360 8.09475 8.25523 8.88414 9.64282 9.94819 11.12334 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020900 B = 0.002387 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.377777 B =11727.113425 C =12005.367997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.028 3.972 3 Si 0.889 3.111 4 H -0.286 1.286 5 H -0.275 1.275 6 H -0.304 1.304 7 C -0.274 4.274 8 H 0.086 0.914 9 N -0.604 5.604 10 C 0.121 3.879 11 C -0.166 4.166 12 C 0.086 3.914 13 O -0.394 6.394 14 C 0.067 3.933 15 H 0.059 0.941 16 C 0.130 3.870 17 N -0.693 5.693 18 C 0.565 3.435 19 O -0.524 6.524 20 C 0.041 3.959 21 N -0.398 5.398 22 C 0.068 3.932 23 C 0.103 3.897 24 F -0.115 7.115 25 C -0.158 4.158 26 C 0.143 3.857 27 F -0.094 7.094 28 C 0.129 3.871 29 H 0.264 0.736 30 H 0.023 0.977 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.414 0.586 39 H 0.185 0.815 40 H 0.168 0.832 41 H 0.066 0.934 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.007 -19.278 8.106 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.172 4.172 3 Si 0.719 3.281 4 H -0.214 1.214 5 H -0.201 1.201 6 H -0.233 1.233 7 C -0.402 4.402 8 H 0.104 0.896 9 N -0.326 5.326 10 C -0.004 4.004 11 C -0.205 4.205 12 C 0.010 3.990 13 O -0.313 6.313 14 C 0.006 3.994 15 H 0.077 0.923 16 C 0.007 3.993 17 N -0.344 5.344 18 C 0.348 3.652 19 O -0.400 6.400 20 C -0.098 4.098 21 N -0.108 5.108 22 C -0.095 4.095 23 C 0.080 3.920 24 F -0.094 7.094 25 C -0.185 4.185 26 C 0.120 3.880 27 F -0.072 7.072 28 C 0.000 4.000 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.251 0.749 39 H 0.202 0.798 40 H 0.186 0.814 41 H 0.084 0.916 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.104 -18.438 7.573 22.816 hybrid contribution 0.355 0.142 0.089 0.393 sum 11.459 -18.295 7.662 22.907 Atomic orbital electron populations 1.69822 1.05767 1.26735 1.52467 1.25296 0.95198 0.97660 0.99000 0.87010 0.79287 0.84323 0.77438 1.21353 1.20099 1.23257 1.18943 0.84820 0.94789 1.41647 0.89622 1.44116 1.08714 1.32013 1.47743 1.21777 0.97010 0.91326 0.90302 1.22629 1.00444 0.97809 0.99605 1.22014 0.98766 0.86310 0.91893 1.86093 1.55768 1.58332 1.31087 1.22575 0.95711 0.94789 0.86367 0.92273 1.21539 1.01831 0.81865 0.94092 1.45781 1.52491 1.08892 1.27196 1.17481 0.80532 0.82477 0.84669 1.90877 1.41000 1.84536 1.23616 1.21607 0.99224 0.94310 0.94698 1.67741 1.11414 1.29329 1.02345 1.23114 0.99464 0.86197 1.00706 1.18769 0.98189 0.85207 0.89803 1.91594 1.93426 1.52324 1.72035 1.21694 1.02013 1.00304 0.94533 1.18316 0.92627 0.93099 0.83973 1.91675 1.74414 1.96597 1.44526 1.21465 0.94358 0.88475 0.95684 0.92641 0.95892 0.90853 0.91524 0.91595 0.91485 0.90604 0.89592 0.90491 0.74928 0.79810 0.81424 0.91588 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.00 13.97 55.49 0.78 -26.23 16 2 C 0.03 0.78 5.18 -17.44 -0.09 0.69 16 3 Si 0.89 21.99 23.99 -169.99 -4.08 17.91 16 4 H -0.29 -6.73 6.37 56.52 0.36 -6.37 16 5 H -0.28 -6.80 6.80 56.52 0.38 -6.42 16 6 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 7 C -0.27 -7.29 9.89 -15.06 -0.15 -7.44 16 8 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 9 N -0.60 -13.62 1.99 -171.79 -0.34 -13.96 16 10 C 0.12 2.54 4.00 -3.00 -0.01 2.52 16 11 C -0.17 -2.78 5.79 -26.98 -0.16 -2.93 16 12 C 0.09 1.40 6.38 36.41 0.23 1.63 16 13 O -0.39 -6.47 9.38 -26.54 -0.25 -6.71 16 14 C 0.07 1.11 2.68 -25.78 -0.07 1.04 16 15 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 16 C 0.13 1.88 5.34 -4.05 -0.02 1.86 16 17 N -0.69 -9.42 5.48 -61.24 -0.34 -9.76 16 18 C 0.57 8.02 7.80 -12.31 -0.10 7.92 16 19 O -0.52 -8.89 15.31 5.32 0.08 -8.81 16 20 C 0.04 0.47 6.75 -82.96 -0.56 -0.09 16 21 N -0.40 -3.95 9.53 -9.70 -0.09 -4.04 16 22 C 0.07 0.48 11.17 -17.47 -0.20 0.28 16 23 C 0.10 0.69 7.35 -39.12 -0.29 0.40 16 24 F -0.12 -0.75 17.28 2.25 0.04 -0.71 16 25 C -0.16 -1.12 10.14 -39.18 -0.40 -1.52 16 26 C 0.14 1.46 7.31 -38.84 -0.28 1.17 16 27 F -0.09 -1.14 15.54 2.25 0.04 -1.10 16 28 C 0.13 2.43 5.12 -3.83 -0.02 2.41 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.02 0.50 6.05 -51.93 -0.31 0.19 16 31 H 0.07 1.68 5.17 -51.93 -0.27 1.41 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.08 8.01 -51.92 -0.42 0.66 16 34 H 0.07 1.25 7.41 -51.93 -0.38 0.86 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.41 5.28 7.78 -40.82 -0.32 4.97 16 39 H 0.19 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.07 1.24 7.98 -51.93 -0.41 0.83 16 42 H 0.05 0.85 8.11 -51.93 -0.42 0.43 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -31.68 351.36 -6.09 -37.77 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.11 Total: 2.40 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -2.11 Total: 7.95 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.00 Total: -53.99 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.17 Total: -15.53 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.07 Total: -1.82 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.08 Total: 17.91 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.68 -6.09 -37.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073662366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.408 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds