Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33324 * 126.81387 * 2 1 4 4 N 1.28511 * 109.43771 * 179.74108 * 3 2 1 5 5 N 1.28708 * 110.64170 * 359.97438 * 4 3 2 6 6 H 0.97002 * 126.03630 * 179.97438 * 5 4 3 7 7 C 1.37006 * 126.81594 * 179.69047 * 2 1 3 8 8 C 1.47233 * 127.18707 * 0.25858 * 7 2 1 9 9 O 1.21625 * 120.00078 * 0.02562 * 8 7 2 10 10 N 1.34778 * 120.00055 * 180.02562 * 8 7 2 11 11 C 1.46500 * 120.00116 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.46761 * 325.00101 * 11 10 8 13 13 C 1.53002 * 109.47077 * 84.99808 * 11 10 8 14 14 C 1.52993 * 109.47243 * 205.00182 * 11 10 8 15 15 C 1.53001 * 109.47157 * 64.99706 * 14 11 10 16 16 N 1.46509 * 109.47171 * 180.02562 * 15 14 11 17 17 C 1.34766 * 119.99816 * 180.02562 * 16 15 14 18 18 O 1.21281 * 120.00253 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99950 * 180.02562 * 17 16 15 20 20 S 1.81000 * 109.47214 * 179.97438 * 19 17 16 21 21 C 1.76204 * 100.00023 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99677 * 359.97438 * 21 20 19 23 23 C 1.38797 * 119.99920 * 180.02562 * 21 20 19 24 24 N 1.31637 * 119.99518 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00220 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47006 * 90.00374 * 25 23 21 27 27 H 1.48504 * 109.47218 * 210.00495 * 25 23 21 28 28 H 1.48500 * 109.47288 * 330.00748 * 25 23 21 29 29 H 1.09003 * 109.46970 * 90.02291 * 1 2 3 30 30 H 1.09003 * 109.47112 * 210.01712 * 1 2 3 31 31 H 1.09001 * 109.47402 * 330.02274 * 1 2 3 32 32 H 0.96992 * 119.99854 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.47274 * 300.00358 * 13 11 10 34 34 H 1.09004 * 109.47085 * 60.00492 * 13 11 10 35 35 H 1.08999 * 109.46896 * 180.02562 * 13 11 10 36 36 H 1.08997 * 109.47452 * 184.99977 * 14 11 10 37 37 H 1.09007 * 109.47267 * 305.00055 * 14 11 10 38 38 H 1.08994 * 109.47198 * 299.99934 * 15 14 11 39 39 H 1.09001 * 109.46825 * 60.00471 * 15 14 11 40 40 H 0.96999 * 119.99901 * 359.97438 * 16 15 14 41 41 H 1.08997 * 109.47127 * 299.99530 * 19 17 16 42 42 H 1.08995 * 109.47177 * 59.99262 * 19 17 16 43 43 H 0.97003 * 119.99686 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5323 0.6836 0.0055 5 7 3.6056 -0.6014 0.0098 6 1 4.4213 -1.1264 0.0139 7 6 2.3280 -1.0968 0.0059 8 6 1.9222 -2.5121 0.0083 9 8 0.7421 -2.8065 0.0043 10 7 2.8585 -3.4816 0.0148 11 6 2.4548 -4.8899 0.0166 12 1 1.5429 -5.0056 0.6024 13 6 2.1996 -5.3490 -1.4204 14 6 3.5682 -5.7388 0.6332 15 6 3.7382 -5.3646 2.1070 16 7 4.8048 -6.1771 2.6973 17 6 5.1321 -6.0195 3.9951 18 8 4.5440 -5.2047 4.6742 19 6 6.2297 -6.8549 4.6022 20 16 6.4306 -6.4122 6.3457 21 6 7.7365 -7.5082 6.7912 22 1 8.1531 -8.1793 6.0546 23 6 8.2288 -7.5099 8.0889 24 7 9.2047 -8.3284 8.4214 25 14 7.5076 -6.3499 9.3630 26 1 6.3766 -7.0172 10.0560 27 1 8.5536 -5.9914 10.3544 28 1 7.0195 -5.1186 8.6914 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8899 0.5141 31 1 -0.3634 0.8902 0.5135 32 1 3.7996 -3.2469 0.0176 33 1 1.4064 -4.7442 -1.8597 34 1 3.1116 -5.2333 -2.0062 35 1 1.8988 -6.3967 -1.4190 36 1 3.3068 -6.7940 0.5541 37 1 4.5020 -5.5550 0.1017 38 1 3.9997 -4.3094 2.1861 39 1 2.8045 -5.5484 2.6385 40 1 5.2749 -6.8290 2.1543 41 1 5.9693 -7.9103 4.5227 42 1 7.1632 -6.6700 4.0708 43 1 9.5490 -8.3294 9.3283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075679227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = 6.761978 kcal Electronic energy + Delta-G solvation = -26144.167467 eV Core-core repulsion = 22159.451952 eV Total energy + Delta-G solvation = -3984.715515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.85414 -40.38198 -39.37918 -37.17300 -34.91924 -34.35649 -33.09718 -32.48873 -31.90718 -30.33091 -28.37838 -28.27142 -25.67395 -25.00982 -23.83148 -22.88794 -21.51832 -21.23264 -20.55812 -19.52379 -17.95522 -17.17219 -17.04385 -16.92241 -16.42221 -16.19279 -15.64258 -15.29371 -15.00632 -14.93517 -14.38668 -14.17867 -13.99778 -13.93907 -13.50064 -13.45259 -13.12607 -13.11255 -12.84350 -12.62832 -12.41406 -12.32038 -11.91546 -11.78333 -11.63707 -11.50659 -11.31384 -11.05107 -11.03683 -10.67170 -10.65003 -9.96038 -9.90140 -9.69374 -9.61711 -9.14705 -9.04326 -8.56518 -6.98220 -6.33899 -4.06352 0.36595 1.80040 1.90791 2.33211 2.51577 2.66874 2.85578 3.20264 3.29668 3.46431 3.55809 3.75212 4.00488 4.21094 4.26122 4.28698 4.36506 4.48564 4.56046 4.66575 4.86267 4.86999 5.05172 5.06612 5.12466 5.22424 5.22920 5.29626 5.36163 5.45689 5.49992 5.63654 5.67616 5.68542 5.78391 5.87480 5.92179 6.05949 6.35906 6.68215 7.41009 7.45795 7.78921 7.89073 8.35888 8.36689 9.12181 10.75214 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.002043 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.467167 B =13699.751704 C =14874.934772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.065 3.935 3 N -0.269 5.269 4 N -0.039 5.039 5 N -0.374 5.374 6 H 0.451 0.549 7 C -0.077 4.077 8 C 0.601 3.399 9 O -0.507 6.507 10 N -0.722 5.722 11 C 0.147 3.853 12 H 0.100 0.900 13 C -0.164 4.164 14 C -0.141 4.141 15 C 0.120 3.880 16 N -0.739 5.739 17 C 0.530 3.470 18 O -0.518 6.518 19 C -0.124 4.124 20 S -0.142 6.142 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.879 5.879 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.236 1.236 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.396 0.604 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.724 8.679 -24.727 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 N -0.136 5.136 4 N -0.020 5.020 5 N -0.102 5.102 6 H 0.297 0.703 7 C -0.211 4.211 8 C 0.385 3.615 9 O -0.380 6.380 10 N -0.374 5.374 11 C 0.043 3.957 12 H 0.118 0.882 13 C -0.222 4.222 14 C -0.180 4.180 15 C -0.004 4.004 16 N -0.394 5.394 17 C 0.315 3.685 18 O -0.392 6.392 19 C -0.275 4.275 20 S 0.084 5.916 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.160 1.160 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.234 0.766 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.792 11.107 -23.441 29.860 hybrid contribution 1.569 -2.174 -0.343 2.703 sum -13.223 8.933 -23.784 28.641 Atomic orbital electron populations 1.20352 0.84670 1.04697 1.03859 1.22395 0.98734 0.86902 0.99464 1.75000 0.95140 1.25917 1.17515 1.78236 1.16047 0.92126 1.15628 1.45478 1.08764 1.07089 1.48822 0.70260 1.22043 0.85117 0.96428 1.17467 1.16673 0.86005 0.82143 0.76727 1.90855 1.16353 1.81827 1.48988 1.46011 1.09098 1.06659 1.75614 1.21004 0.98762 0.78345 0.97576 0.88212 1.22182 1.02418 1.02215 0.95384 1.22158 0.99210 1.01362 0.95232 1.21271 0.91560 0.95501 0.92077 1.45956 1.39175 1.42753 1.11485 1.20321 0.83772 0.83231 0.81134 1.90716 1.52739 1.35274 1.60459 1.23278 0.99307 1.02414 1.02509 1.84829 1.49235 1.54305 1.03193 1.22300 1.20220 1.24093 1.00371 0.89372 1.24720 0.93922 0.95045 0.97647 1.69939 1.25305 1.36246 1.20080 0.86732 0.79695 0.83208 0.82197 1.19173 1.19889 1.15964 0.89851 0.88649 0.90065 0.77035 0.91643 0.92236 0.90923 0.88867 0.90378 0.91898 0.91275 0.76598 0.88445 0.88466 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 9.93 36.00 0.36 -0.22 16 2 C 0.07 0.62 7.30 -82.39 -0.60 0.02 16 3 N -0.27 -3.00 12.35 33.51 0.41 -2.58 16 4 N -0.04 -0.38 13.35 60.35 0.81 0.42 16 5 N -0.37 -2.48 6.97 33.31 0.23 -2.24 16 6 H 0.45 1.17 8.32 -190.33 -1.58 -0.41 16 7 C -0.08 -0.62 7.17 -82.33 -0.59 -1.21 16 8 C 0.60 4.71 7.77 -12.61 -0.10 4.62 16 9 O -0.51 -5.32 14.65 5.26 0.08 -5.24 16 10 N -0.72 -3.61 4.53 -54.94 -0.25 -3.86 16 11 C 0.15 0.73 2.57 -67.93 -0.17 0.56 16 12 H 0.10 0.67 7.58 -51.93 -0.39 0.28 16 13 C -0.16 -0.70 9.48 37.16 0.35 -0.34 16 14 C -0.14 -0.60 4.87 -26.73 -0.13 -0.73 16 15 C 0.12 1.02 5.56 -4.04 -0.02 1.00 16 16 N -0.74 -7.73 5.56 -60.29 -0.33 -8.07 16 17 C 0.53 8.66 7.85 -10.99 -0.09 8.58 16 18 O -0.52 -10.67 15.86 5.56 0.09 -10.59 16 19 C -0.12 -2.26 6.16 36.01 0.22 -2.04 16 20 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 21 C -0.52 -14.75 10.04 30.94 0.31 -14.44 16 22 H 0.09 2.59 8.03 -52.49 -0.42 2.16 16 23 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 24 N -0.88 -26.17 13.97 55.49 0.78 -25.39 16 25 Si 0.86 21.54 27.74 -169.99 -4.71 16.82 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 28 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.76 6.61 -51.93 -0.34 0.42 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.40 1.02 7.87 -40.82 -0.32 0.70 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 38 H 0.06 0.58 7.75 -51.93 -0.40 0.18 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.40 2.94 8.47 -40.82 -0.35 2.59 16 41 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -37.87 383.02 -6.88 -44.74 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.19 Total: -2.72 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -0.56 Total: -1.56 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 1.64 Total: -41.73 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.17 Total: -15.83 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.82 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.87 -6.88 -44.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075679227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.507 kcal (2) G-P(sol) polarization free energy of solvation -37.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds