Wall clock time and date at job start Sat Apr 11 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33319 * 126.81212 * 2 1 4 4 N 1.28513 * 109.43697 * 179.97438 * 3 2 1 5 5 N 1.28706 * 110.64086 * 359.97438 * 4 3 2 6 6 H 0.97005 * 126.04198 * 180.02562 * 5 4 3 7 7 C 1.37000 * 126.81306 * 179.67779 * 2 1 3 8 8 C 1.47231 * 127.19089 * 0.02562 * 7 2 1 9 9 O 1.21621 * 120.00097 * 359.97438 * 8 7 2 10 10 N 1.34774 * 120.00257 * 180.02562 * 8 7 2 11 11 C 1.46500 * 120.00458 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47410 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47215 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.46764 * 304.99773 * 13 12 11 15 15 C 1.53004 * 109.47153 * 184.99807 * 13 12 11 16 16 N 1.46504 * 109.47261 * 64.99823 * 13 12 11 17 17 C 1.34779 * 119.99914 * 205.00609 * 16 13 12 18 18 O 1.21285 * 119.99894 * 359.97438 * 17 16 13 19 19 C 1.50696 * 119.99984 * 179.97438 * 17 16 13 20 20 S 1.80994 * 109.47108 * 179.97438 * 19 17 16 21 21 C 1.76206 * 99.99964 * 179.97438 * 20 19 17 22 22 H 1.07996 * 119.99994 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99806 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00344 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99851 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46865 * 90.00207 * 25 23 21 27 27 H 1.48495 * 109.47063 * 210.00803 * 25 23 21 28 28 H 1.48507 * 109.46869 * 330.00585 * 25 23 21 29 29 H 1.09001 * 109.46953 * 90.02796 * 1 2 3 30 30 H 1.09000 * 109.47318 * 210.02394 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.03025 * 1 2 3 32 32 H 0.97007 * 119.99976 * 359.97438 * 10 8 7 33 33 H 1.09008 * 109.46603 * 299.99251 * 11 10 8 34 34 H 1.09003 * 109.47132 * 59.98830 * 11 10 8 35 35 H 1.09008 * 109.46740 * 299.99307 * 12 11 10 36 36 H 1.08998 * 109.47465 * 59.99666 * 12 11 10 37 37 H 1.08990 * 109.47035 * 59.99610 * 15 13 12 38 38 H 1.09001 * 109.46651 * 179.97438 * 15 13 12 39 39 H 1.09007 * 109.46714 * 299.99783 * 15 13 12 40 40 H 0.97000 * 119.99791 * 24.99249 * 16 13 12 41 41 H 1.09002 * 109.47246 * 299.99839 * 19 17 16 42 42 H 1.09001 * 109.47119 * 59.99500 * 19 17 16 43 43 H 0.96998 * 120.00133 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6057 -0.6014 0.0015 6 1 4.4213 -1.1265 0.0023 7 6 2.3280 -1.0968 0.0062 8 6 1.9222 -2.5121 0.0136 9 8 0.7422 -2.8064 0.0152 10 7 2.8585 -3.4815 0.0197 11 6 2.4548 -4.8898 0.0265 12 6 3.7009 -5.7775 0.0318 13 6 3.2792 -7.2483 0.0396 14 1 2.6122 -7.4305 0.8821 15 6 4.5201 -8.1339 0.1706 16 7 2.5840 -7.5637 -1.2108 17 6 1.7026 -8.5824 -1.2534 18 8 1.4853 -9.2383 -0.2566 19 6 0.9870 -8.9064 -2.5394 20 16 -0.1197 -10.3141 -2.2759 21 6 -0.8062 -10.4702 -3.8912 22 1 -0.4998 -9.7943 -4.6758 23 6 -1.7399 -11.4626 -4.1555 24 7 -2.1130 -12.2868 -3.1994 25 14 -2.4672 -11.6285 -5.8681 26 1 -1.6275 -12.5498 -6.6752 27 1 -3.8454 -12.1725 -5.7700 28 1 -2.5065 -10.2950 -6.5205 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 3.7997 -3.2468 0.0187 33 1 1.8599 -5.0928 0.9170 34 1 1.8616 -5.1020 -0.8630 35 1 4.2955 -5.5744 -0.8590 36 1 4.2944 -5.5654 0.9211 37 1 5.0373 -7.8992 1.1008 38 1 4.2195 -9.1816 0.1766 39 1 5.1871 -7.9516 -0.6721 40 1 2.7579 -7.0391 -2.0080 41 1 0.4057 -8.0417 -2.8596 42 1 1.7176 -9.1579 -3.3083 43 1 -2.7658 -12.9800 -3.3840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077702813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:57 Heat of formation + Delta-G solvation = 7.395620 kcal Electronic energy + Delta-G solvation = -25991.761944 eV Core-core repulsion = 22007.073905 eV Total energy + Delta-G solvation = -3984.688038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.90476 -40.16543 -39.44505 -36.84437 -35.21289 -34.28995 -32.95007 -32.44190 -31.90225 -29.78296 -28.57759 -28.13612 -25.50202 -25.10106 -23.89787 -22.33153 -21.82147 -21.08067 -20.42648 -19.50905 -17.86783 -17.20042 -17.07121 -16.69997 -16.58211 -16.02606 -15.61196 -15.10087 -14.81531 -14.72840 -14.41315 -14.24010 -13.88181 -13.73782 -13.45577 -13.30514 -13.13138 -13.01491 -12.69253 -12.36775 -12.26552 -12.02810 -11.97568 -11.68726 -11.66311 -11.21936 -11.08389 -11.07428 -11.03543 -10.77239 -10.63301 -9.91980 -9.83069 -9.64309 -9.44678 -9.08859 -9.00195 -8.25744 -6.51531 -6.22904 -3.93566 0.32853 1.75397 1.84588 2.34761 2.52318 2.98026 3.03671 3.21567 3.26849 3.30737 3.65709 3.71493 4.00144 4.19203 4.22775 4.30462 4.49265 4.52744 4.55915 5.06139 5.08764 5.12394 5.18319 5.20680 5.21954 5.31851 5.40081 5.47237 5.49580 5.52767 5.61728 5.69788 5.85398 5.88735 5.90116 6.00097 6.07574 6.11423 6.56182 6.69640 7.44061 7.58259 7.62246 7.73186 8.33951 8.55250 9.22551 10.84489 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.002017 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.837334 B =13880.757439 C =15450.423841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.066 3.934 3 N -0.268 5.268 4 N -0.042 5.042 5 N -0.376 5.376 6 H 0.450 0.550 7 C -0.075 4.075 8 C 0.594 3.406 9 O -0.501 6.501 10 N -0.726 5.726 11 C 0.116 3.884 12 C -0.138 4.138 13 C 0.147 3.853 14 H 0.093 0.907 15 C -0.163 4.163 16 N -0.737 5.737 17 C 0.534 3.466 18 O -0.515 6.515 19 C -0.155 4.155 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.394 0.606 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.397 0.603 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.385 22.091 6.843 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 N -0.135 5.135 4 N -0.024 5.024 5 N -0.104 5.104 6 H 0.296 0.704 7 C -0.208 4.208 8 C 0.377 3.623 9 O -0.373 6.373 10 N -0.378 5.378 11 C -0.006 4.006 12 C -0.177 4.177 13 C 0.041 3.959 14 H 0.111 0.889 15 C -0.222 4.222 16 N -0.392 5.392 17 C 0.320 3.680 18 O -0.389 6.389 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.227 0.773 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.674 21.958 8.577 28.309 hybrid contribution 0.597 -0.301 -2.700 2.781 sum 16.272 21.657 5.878 27.719 Atomic orbital electron populations 1.20381 0.84546 1.04697 1.04152 1.22418 0.98800 0.86854 0.99298 1.74997 0.95106 1.25931 1.17482 1.78212 1.16142 0.92130 1.15925 1.45454 1.08700 1.07068 1.49155 0.70378 1.22086 0.85036 0.96470 1.17232 1.16704 0.86083 0.82119 0.77394 1.90909 1.16334 1.81697 1.48339 1.45883 1.08900 1.07056 1.75966 1.21555 0.97406 0.77536 1.04127 1.22127 0.97298 0.94495 1.03761 1.20763 0.94442 0.91879 0.88777 0.88924 1.22176 0.97026 1.01361 1.01592 1.46138 1.44832 1.35450 1.12788 1.20311 0.78211 0.79088 0.90350 1.90706 1.63105 1.48993 1.36080 1.23538 1.03229 1.06516 0.97234 1.85392 1.48101 1.33135 1.16675 1.22859 1.29069 1.20225 0.96226 0.90947 1.24993 0.95674 0.94753 0.98178 1.70011 1.30728 1.17303 1.32210 0.86169 0.78345 0.78494 0.82502 1.20291 1.20727 1.19690 0.89633 0.88559 0.90060 0.77261 0.90315 0.90150 0.90522 0.89645 0.91865 0.91313 0.92524 0.76936 0.89213 0.89287 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 9.94 36.01 0.36 -0.26 16 2 C 0.07 0.61 7.29 -82.39 -0.60 0.01 16 3 N -0.27 -2.79 12.35 33.51 0.41 -2.37 16 4 N -0.04 -0.37 13.35 60.35 0.81 0.44 16 5 N -0.38 -2.01 6.97 33.31 0.23 -1.77 16 6 H 0.45 0.35 8.32 -190.33 -1.58 -1.24 16 7 C -0.07 -0.57 7.17 -82.33 -0.59 -1.16 16 8 C 0.59 4.96 7.81 -12.61 -0.10 4.87 16 9 O -0.50 -6.10 14.98 5.26 0.08 -6.03 16 10 N -0.73 -3.76 5.55 -61.45 -0.34 -4.10 16 11 C 0.12 0.79 5.56 -4.04 -0.02 0.77 16 12 C -0.14 -0.67 4.87 -26.73 -0.13 -0.80 16 13 C 0.15 1.32 2.57 -67.92 -0.17 1.15 16 14 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 15 C -0.16 -1.41 9.48 37.16 0.35 -1.06 16 16 N -0.74 -8.32 4.53 -53.80 -0.24 -8.56 16 17 C 0.53 9.23 7.81 -10.99 -0.09 9.14 16 18 O -0.52 -11.01 15.53 5.55 0.09 -10.92 16 19 C -0.15 -3.00 6.16 36.00 0.22 -2.77 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 21 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 25 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.83 6.60 -51.93 -0.34 0.48 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.39 0.60 7.74 -40.82 -0.32 0.28 16 33 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.08 0.70 7.75 -51.93 -0.40 0.29 16 35 H 0.08 0.26 8.14 -51.92 -0.42 -0.17 16 36 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.40 3.39 8.60 -40.82 -0.35 3.04 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -38.37 385.70 -7.39 -45.76 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -7.16 Total: -2.50 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.57 Total: -2.97 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 1.60 Total: -41.65 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.17 Total: -16.94 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.37 -7.39 -45.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077702813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.160 kcal (2) G-P(sol) polarization free energy of solvation -38.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds