Wall clock time and date at job start Sat Apr 11 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86797 * 120.00050 * 2 1 4 4 H 1.48502 * 109.47124 * 239.99665 * 3 2 1 5 5 H 1.48499 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47513 * 119.99875 * 3 2 1 7 7 C 1.38814 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00387 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00185 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.88660 * 23.65281 * 10 9 7 12 12 C 1.53954 * 113.74770 * 252.22544 * 10 9 7 13 13 C 1.53943 * 87.29746 * 270.25093 * 12 10 9 14 14 H 1.09000 * 113.75120 * 220.78154 * 13 12 10 15 15 N 1.46506 * 113.66557 * 89.73639 * 13 12 10 16 16 C 1.34775 * 119.99693 * 107.81012 * 15 13 12 17 17 O 1.21680 * 120.00398 * 0.02562 * 16 15 13 18 18 C 1.46726 * 119.99780 * 180.02562 * 16 15 13 19 19 O 1.35347 * 126.64249 * 359.68751 * 18 16 15 20 20 C 1.33663 * 107.68216 * 179.87188 * 19 18 16 21 21 N 1.30621 * 109.15474 * 0.39985 * 20 19 18 22 22 C 1.33686 * 108.99618 * 359.75382 * 21 20 19 23 23 C 1.50701 * 126.27642 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.46964 * 30.02037 * 23 22 21 25 25 F 1.39899 * 109.47116 * 150.02042 * 23 22 21 26 26 C 1.52907 * 86.78215 * 335.26517 * 13 12 10 27 27 C 1.52907 * 121.13663 * 259.17980 * 26 13 12 28 28 C 1.53957 * 86.78221 * 209.37875 * 27 26 13 29 29 C 1.52910 * 121.13865 * 150.61940 * 26 13 12 30 30 H 0.96996 * 120.00468 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00137 * 359.97438 * 9 7 2 32 32 H 1.08998 * 113.58085 * 155.64195 * 12 10 9 33 33 H 1.09006 * 113.57333 * 24.85611 * 12 10 9 34 34 H 0.97000 * 120.00117 * 287.81364 * 15 13 12 35 35 H 1.08000 * 125.42007 * 180.15143 * 20 19 18 36 36 H 1.08996 * 109.46807 * 270.02397 * 23 22 21 37 37 H 1.08999 * 113.66650 * 323.85154 * 27 26 13 38 38 H 1.09002 * 113.66061 * 94.91304 * 27 26 13 39 39 H 1.08996 * 113.58056 * 270.12744 * 28 27 26 40 40 H 1.09006 * 113.64746 * 139.34776 * 28 27 26 41 41 H 1.09005 * 113.66392 * 265.09466 * 29 26 13 42 42 H 1.09001 * 113.66126 * 36.14420 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0666 -3.5640 0.4034 12 6 1.9955 -4.4088 -1.3414 13 6 0.7265 -5.1006 -0.8113 14 1 0.6698 -6.1612 -1.0563 15 7 -0.5098 -4.3777 -1.1199 16 6 -1.3591 -4.8609 -2.0482 17 8 -1.0992 -5.8976 -2.6297 18 6 -2.5970 -4.1366 -2.3577 19 8 -3.0203 -2.9820 -1.7923 20 6 -4.1888 -2.6589 -2.3551 21 7 -4.5065 -3.5694 -3.2361 22 6 -3.5467 -4.4995 -3.2661 23 6 -3.5197 -5.7249 -4.1430 24 9 -4.1969 -5.4583 -5.3378 25 9 -2.1929 -6.0671 -4.4252 26 6 1.2657 -4.8229 0.5924 27 6 1.9581 -5.9181 1.4043 28 6 1.4402 -5.1938 2.6603 29 6 0.3200 -4.6163 1.7761 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.8310 -5.0911 -1.4982 33 1 1.8127 -3.7589 -2.1972 34 1 -0.7172 -3.5514 -0.6561 35 1 -4.7784 -1.7861 -2.1164 36 1 -4.0063 -6.5521 -3.6263 37 1 1.5260 -6.9085 1.2610 38 1 3.0442 -5.9107 1.3118 39 1 2.1270 -4.4388 3.0426 40 1 1.0789 -5.8686 3.4364 41 1 0.0974 -3.5690 1.9806 42 1 -0.5725 -5.2408 1.7372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078726226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:00 Heat of formation + Delta-G solvation = -39.465811 kcal Electronic energy + Delta-G solvation = -30936.376717 eV Core-core repulsion = 26363.523477 eV Total energy + Delta-G solvation = -4572.853240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.87405 -46.86545 -43.61202 -40.69994 -38.80148 -35.52592 -35.19316 -33.77210 -32.44571 -31.19188 -29.92488 -27.11970 -25.53116 -24.92693 -24.22299 -23.89922 -22.71659 -21.78531 -20.71850 -20.17118 -19.02230 -17.90449 -17.69794 -17.14563 -17.03724 -16.95246 -16.67133 -15.91577 -15.62263 -15.22608 -14.95471 -14.73015 -14.45954 -14.18336 -13.99179 -13.61081 -13.36061 -13.16446 -12.99680 -12.82341 -12.60343 -12.18402 -11.97796 -11.77944 -11.59541 -11.42949 -11.36728 -11.01782 -10.96349 -10.93054 -10.77053 -10.29511 -10.19945 -10.09101 -9.84707 -9.72919 -9.48830 -9.32717 -8.96516 -8.66528 -7.14770 -5.93512 -3.22695 0.60291 2.14653 2.29363 3.03496 3.17758 3.31937 3.35526 3.40554 3.41147 3.93817 4.16897 4.39971 4.55221 4.69019 4.81387 4.92907 4.95530 5.05440 5.10737 5.20349 5.24303 5.32306 5.39267 5.59129 5.77526 5.79189 5.82168 5.89159 5.94183 5.96262 6.10722 6.13329 6.27142 6.44710 6.51995 6.60333 6.72478 6.82296 6.94812 7.22625 7.58128 7.62729 8.15055 8.26067 9.36011 9.89278 10.22895 11.28754 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010013 B = 0.004311 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.625956 B = 6494.001423 C = 8228.755462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.699 5.699 10 C 0.190 3.810 11 H 0.068 0.932 12 C -0.184 4.184 13 C 0.135 3.865 14 H 0.097 0.903 15 N -0.679 5.679 16 C 0.596 3.404 17 O -0.502 6.502 18 C -0.050 4.050 19 O -0.166 6.166 20 C 0.210 3.790 21 N -0.474 5.474 22 C -0.023 4.023 23 C 0.357 3.643 24 F -0.192 7.192 25 F -0.163 7.163 26 C -0.129 4.129 27 C -0.105 4.105 28 C -0.134 4.134 29 C -0.127 4.127 30 H 0.257 0.743 31 H 0.379 0.621 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.413 0.587 35 H 0.263 0.737 36 H 0.128 0.872 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.996 -11.282 -0.053 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.339 5.339 10 C 0.077 3.923 11 H 0.087 0.913 12 C -0.226 4.226 13 C 0.030 3.970 14 H 0.115 0.885 15 N -0.330 5.330 16 C 0.380 3.620 17 O -0.379 6.379 18 C -0.108 4.108 19 O -0.050 6.050 20 C -0.015 4.015 21 N -0.201 5.201 22 C -0.148 4.148 23 C 0.303 3.697 24 F -0.173 7.173 25 F -0.144 7.144 26 C -0.132 4.132 27 C -0.143 4.143 28 C -0.171 4.171 29 C -0.165 4.165 30 H 0.067 0.933 31 H 0.214 0.786 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.252 0.748 35 H 0.278 0.722 36 H 0.145 0.855 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.198 -11.752 -0.788 13.310 hybrid contribution 0.435 1.708 0.410 1.810 sum -5.763 -10.044 -0.378 11.586 Atomic orbital electron populations 1.69610 1.05100 1.26069 1.57169 1.24725 0.95564 0.97754 1.02384 0.86236 0.78568 0.83247 0.77926 1.21211 1.21667 1.21158 1.19219 0.91170 0.83660 1.43494 0.90859 1.42110 1.05231 0.99428 1.87104 1.20902 0.94764 0.84694 0.91892 0.91347 1.24293 0.96289 1.00260 1.01795 1.21770 0.83114 0.95994 0.96077 0.88503 1.45673 1.20671 1.27531 1.39146 1.16349 0.80556 0.84285 0.80843 1.90965 1.74170 1.22305 1.50474 1.23164 0.98975 0.88651 0.99970 1.84699 1.34000 1.33530 1.52768 1.28453 0.83622 0.99656 0.89809 1.70209 1.27461 1.02712 1.19742 1.22438 0.92697 0.99375 1.00264 1.19300 0.77746 0.92162 0.80524 1.93021 1.79971 1.95288 1.49064 1.93203 1.34771 1.92527 1.93868 1.23594 0.98764 0.99001 0.91801 1.22514 0.99982 0.96565 0.95272 1.22746 0.98810 0.99634 0.95936 1.22584 0.96250 1.02202 0.95450 0.93303 0.78573 0.90044 0.90829 0.74803 0.72194 0.85452 0.90227 0.91228 0.90019 0.92129 0.90137 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.77 13.06 55.49 0.72 -25.05 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.30 9.97 -15.06 -0.15 -6.45 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.70 -15.81 4.74 -52.99 -0.25 -16.06 16 10 C 0.19 3.49 4.36 -67.48 -0.29 3.19 16 11 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 12 C -0.18 -3.14 7.69 -25.75 -0.20 -3.34 16 13 C 0.14 2.16 4.12 -67.48 -0.28 1.88 16 14 H 0.10 1.51 7.46 -51.93 -0.39 1.12 16 15 N -0.68 -11.48 4.93 -54.66 -0.27 -11.75 16 16 C 0.60 10.17 7.74 -12.83 -0.10 10.07 16 17 O -0.50 -9.13 12.73 5.21 0.07 -9.06 16 18 C -0.05 -0.79 7.14 -36.84 -0.26 -1.05 16 19 O -0.17 -2.49 10.57 4.42 0.05 -2.45 16 20 C 0.21 2.50 13.21 52.25 0.69 3.19 16 21 N -0.47 -6.65 11.21 -10.88 -0.12 -6.78 16 22 C -0.02 -0.34 6.78 -82.47 -0.56 -0.90 16 23 C 0.36 4.86 5.63 36.01 0.20 5.06 16 24 F -0.19 -2.77 17.29 2.25 0.04 -2.73 16 25 F -0.16 -2.64 13.49 2.25 0.03 -2.61 16 26 C -0.13 -1.95 0.78 -154.71 -0.12 -2.07 16 27 C -0.11 -1.30 7.84 -26.28 -0.21 -1.51 16 28 C -0.13 -1.73 8.08 -25.75 -0.21 -1.94 16 29 C -0.13 -1.89 7.27 -26.28 -0.19 -2.09 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 31 H 0.38 8.85 5.14 -40.82 -0.21 8.64 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.41 7.52 5.94 -40.82 -0.24 7.28 16 35 H 0.26 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -30.65 358.54 -6.13 -36.78 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -5.00 Total: 14.27 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.77 Total: 3.75 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.08 Total: -59.64 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.11 Total: -11.51 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.07 Total: -5.34 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.65 -6.13 -36.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078726226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.688 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds