Wall clock time and date at job start Sat Apr 11 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86797 * 120.00050 * 2 1 4 4 H 1.48502 * 109.47124 * 239.99665 * 3 2 1 5 5 H 1.48499 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47513 * 119.99875 * 3 2 1 7 7 C 1.38814 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00387 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00185 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.88660 * 23.65281 * 10 9 7 12 12 C 1.53954 * 113.74770 * 252.22544 * 10 9 7 13 13 C 1.53943 * 87.29746 * 270.25093 * 12 10 9 14 14 H 1.09000 * 113.75120 * 220.78154 * 13 12 10 15 15 N 1.46506 * 113.66557 * 89.73639 * 13 12 10 16 16 C 1.34775 * 119.99693 * 107.81012 * 15 13 12 17 17 O 1.21680 * 120.00398 * 0.02562 * 16 15 13 18 18 C 1.46726 * 119.99780 * 180.02562 * 16 15 13 19 19 O 1.35347 * 126.64249 * 359.68751 * 18 16 15 20 20 C 1.33663 * 107.68216 * 179.87188 * 19 18 16 21 21 N 1.30621 * 109.15474 * 0.39985 * 20 19 18 22 22 C 1.33686 * 108.99618 * 359.75382 * 21 20 19 23 23 C 1.50701 * 126.27642 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.46964 * 30.02037 * 23 22 21 25 25 F 1.39899 * 109.47116 * 150.02042 * 23 22 21 26 26 C 1.52907 * 86.78215 * 335.26517 * 13 12 10 27 27 C 1.52907 * 121.13663 * 259.17980 * 26 13 12 28 28 C 1.53957 * 86.78221 * 209.37875 * 27 26 13 29 29 C 1.52910 * 121.13865 * 150.61940 * 26 13 12 30 30 H 0.96996 * 120.00468 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00137 * 359.97438 * 9 7 2 32 32 H 1.08998 * 113.58085 * 155.64195 * 12 10 9 33 33 H 1.09006 * 113.57333 * 24.85611 * 12 10 9 34 34 H 0.97000 * 120.00117 * 287.81364 * 15 13 12 35 35 H 1.08000 * 125.42007 * 180.15143 * 20 19 18 36 36 H 1.08996 * 109.46807 * 270.02397 * 23 22 21 37 37 H 1.08999 * 113.66650 * 323.85154 * 27 26 13 38 38 H 1.09002 * 113.66061 * 94.91304 * 27 26 13 39 39 H 1.08996 * 113.58056 * 270.12744 * 28 27 26 40 40 H 1.09006 * 113.64746 * 139.34776 * 28 27 26 41 41 H 1.09005 * 113.66392 * 265.09466 * 29 26 13 42 42 H 1.09001 * 113.66126 * 36.14420 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0666 -3.5640 0.4034 12 6 1.9955 -4.4088 -1.3414 13 6 0.7265 -5.1006 -0.8113 14 1 0.6698 -6.1612 -1.0563 15 7 -0.5098 -4.3777 -1.1199 16 6 -1.3591 -4.8609 -2.0482 17 8 -1.0992 -5.8976 -2.6297 18 6 -2.5970 -4.1366 -2.3577 19 8 -3.0203 -2.9820 -1.7923 20 6 -4.1888 -2.6589 -2.3551 21 7 -4.5065 -3.5694 -3.2361 22 6 -3.5467 -4.4995 -3.2661 23 6 -3.5197 -5.7249 -4.1430 24 9 -4.1969 -5.4583 -5.3378 25 9 -2.1929 -6.0671 -4.4252 26 6 1.2657 -4.8229 0.5924 27 6 1.9581 -5.9181 1.4043 28 6 1.4402 -5.1938 2.6603 29 6 0.3200 -4.6163 1.7761 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.8310 -5.0911 -1.4982 33 1 1.8127 -3.7589 -2.1972 34 1 -0.7172 -3.5514 -0.6561 35 1 -4.7784 -1.7861 -2.1164 36 1 -4.0063 -6.5521 -3.6263 37 1 1.5260 -6.9085 1.2610 38 1 3.0442 -5.9107 1.3118 39 1 2.1270 -4.4388 3.0426 40 1 1.0789 -5.8686 3.4364 41 1 0.0974 -3.5690 1.9806 42 1 -0.5725 -5.2408 1.7372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078726226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:59 Heat of formation + Delta-G solvation = -61.004518 kcal Electronic energy + Delta-G solvation = -30937.310705 eV Core-core repulsion = 26363.523477 eV Total energy + Delta-G solvation = -4573.787229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.00353 -48.01306 -44.71061 -41.99623 -40.09205 -36.75690 -36.41391 -35.42611 -33.92157 -32.40258 -31.64479 -28.26559 -26.77047 -26.42386 -25.49684 -25.16222 -24.07378 -23.01488 -21.96782 -21.42482 -20.31820 -19.31868 -18.81910 -18.68935 -18.26996 -18.08795 -17.79132 -17.18643 -16.70491 -16.66226 -16.23921 -16.17293 -15.91951 -15.49943 -15.26097 -14.91686 -14.76499 -14.67610 -14.33545 -13.99815 -13.83966 -13.46428 -13.27741 -13.10000 -12.89709 -12.80686 -12.68608 -12.55615 -12.44284 -12.22797 -12.11225 -11.94584 -11.84055 -11.46643 -11.28248 -11.05396 -10.87108 -10.68245 -10.46391 -9.95773 -9.00454 -7.95197 -5.22539 -0.54887 1.10701 1.20033 1.48486 1.49460 1.54924 1.76285 1.94732 2.30763 2.54978 2.92327 3.13366 3.33269 3.37111 3.45169 3.68710 3.78014 3.81161 3.94517 3.99245 4.02842 4.06712 4.18144 4.26710 4.30631 4.54941 4.66781 4.74717 4.86439 4.88255 4.93166 4.98306 5.12345 5.15293 5.16887 5.26205 5.46727 5.56760 5.61875 5.62544 6.10684 6.27333 6.33059 6.83364 7.34449 8.06837 8.30495 9.27177 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010013 B = 0.004311 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.625956 B = 6494.001423 C = 8228.755462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.064 4.064 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.709 5.709 10 C 0.174 3.826 11 H 0.067 0.933 12 C -0.177 4.177 13 C 0.137 3.863 14 H 0.108 0.892 15 N -0.682 5.682 16 C 0.595 3.405 17 O -0.518 6.518 18 C -0.079 4.079 19 O -0.183 6.183 20 C 0.232 3.768 21 N -0.494 5.494 22 C -0.018 4.018 23 C 0.352 3.648 24 F -0.198 7.198 25 F -0.180 7.180 26 C -0.120 4.120 27 C -0.090 4.090 28 C -0.128 4.128 29 C -0.129 4.129 30 H 0.252 0.748 31 H 0.373 0.627 32 H 0.109 0.891 33 H 0.041 0.959 34 H 0.405 0.595 35 H 0.310 0.690 36 H 0.169 0.831 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.997 -12.498 0.553 13.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.257 4.257 3 Si 0.796 3.204 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.348 5.348 10 C 0.063 3.937 11 H 0.085 0.915 12 C -0.219 4.219 13 C 0.032 3.968 14 H 0.126 0.874 15 N -0.332 5.332 16 C 0.380 3.620 17 O -0.396 6.396 18 C -0.137 4.137 19 O -0.068 6.068 20 C 0.008 3.992 21 N -0.221 5.221 22 C -0.143 4.143 23 C 0.298 3.702 24 F -0.179 7.179 25 F -0.161 7.161 26 C -0.122 4.122 27 C -0.128 4.128 28 C -0.165 4.165 29 C -0.167 4.167 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.128 0.872 33 H 0.060 0.940 34 H 0.243 0.757 35 H 0.325 0.675 36 H 0.186 0.814 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.167 -13.015 -0.187 14.403 hybrid contribution 0.396 2.105 0.199 2.151 sum -5.770 -10.910 0.012 12.342 Atomic orbital electron populations 1.69738 1.06113 1.26104 1.58939 1.25387 0.96357 1.00438 1.03493 0.85333 0.77318 0.79896 0.77867 1.21171 1.22224 1.20537 1.19551 0.91466 0.84990 1.41664 0.90759 1.42187 1.05095 1.00199 1.87368 1.21128 0.94846 0.84272 0.93451 0.91508 1.24227 0.98122 1.00098 0.99454 1.21834 0.82331 0.96176 0.96457 0.87401 1.45733 1.21059 1.27250 1.39156 1.16488 0.80883 0.84204 0.80428 1.90940 1.74788 1.22954 1.50915 1.22952 0.99378 0.89714 1.01636 1.84702 1.35226 1.33458 1.53432 1.29662 0.82264 0.99689 0.87616 1.70267 1.27622 1.03288 1.20961 1.22711 0.92359 0.99615 0.99573 1.19780 0.77154 0.92961 0.80335 1.93004 1.79932 1.95414 1.49530 1.93163 1.36296 1.92639 1.93993 1.23472 0.98624 0.98483 0.91625 1.22546 1.00689 0.96394 0.93191 1.22710 0.97494 0.99627 0.96665 1.22584 0.97419 1.00540 0.96155 0.93913 0.79262 0.87248 0.94030 0.75709 0.67498 0.81419 0.87877 0.89953 0.91182 0.89764 0.93536 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.22 13.06 21.65 0.28 -53.93 16 2 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 3 Si 0.97 44.31 29.55 68.60 2.03 46.33 16 4 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.25 -12.82 9.97 84.03 0.84 -11.98 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 9 N -0.71 -32.76 4.74 -321.56 -1.52 -34.29 16 10 C 0.17 6.34 4.36 45.28 0.20 6.54 16 11 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 12 C -0.18 -5.96 7.69 31.23 0.24 -5.72 16 13 C 0.14 4.25 4.12 45.28 0.19 4.44 16 14 H 0.11 3.16 7.46 -2.39 -0.02 3.14 16 15 N -0.68 -23.35 4.93 -445.08 -2.19 -25.55 16 16 C 0.60 20.49 7.74 86.46 0.67 21.15 16 17 O -0.52 -18.75 12.73 -4.28 -0.05 -18.80 16 18 C -0.08 -2.54 7.14 24.05 0.17 -2.37 16 19 O -0.18 -5.48 10.57 -7.11 -0.08 -5.55 16 20 C 0.23 5.17 13.21 130.42 1.72 6.90 16 21 N -0.49 -13.27 11.21 -303.12 -3.40 -16.67 16 22 C -0.02 -0.52 6.78 41.84 0.28 -0.23 16 23 C 0.35 9.25 5.63 71.24 0.40 9.65 16 24 F -0.20 -5.52 17.29 44.97 0.78 -4.74 16 25 F -0.18 -5.80 13.49 44.97 0.61 -5.19 16 26 C -0.12 -3.47 0.78 -52.31 -0.04 -3.51 16 27 C -0.09 -1.95 7.84 30.89 0.24 -1.70 16 28 C -0.13 -3.00 8.08 31.23 0.25 -2.75 16 29 C -0.13 -3.74 7.27 30.88 0.22 -3.51 16 30 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 31 H 0.37 18.02 5.14 -92.71 -0.48 17.55 16 32 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.41 15.27 5.94 -92.71 -0.55 14.72 16 35 H 0.31 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.17 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.05 1.67 7.58 -2.38 -0.02 1.65 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -67.65 358.54 2.37 -65.28 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: 0.07 Total: 39.17 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 5.85 Total: 13.93 kcal Atomic # 7 Polarization: -123.60 SS G_CDS: -6.83 Total: -130.43 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.13 Total: -24.35 kcal Atomic # 9 Polarization: -11.32 SS G_CDS: 1.38 Total: -9.93 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -67.65 2.37 -65.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078726226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.278 kcal (2) G-P(sol) polarization free energy of solvation -67.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds