Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48498 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47202 * 300.00564 * 3 2 1 6 6 H 1.48508 * 109.46633 * 60.00167 * 3 2 1 7 7 C 1.38817 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99633 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99792 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.95372 * 23.59333 * 10 9 7 12 12 C 1.53957 * 113.66407 * 252.18888 * 10 9 7 13 13 C 1.53948 * 87.29686 * 220.79629 * 12 10 9 14 14 H 1.08998 * 113.74669 * 139.21661 * 13 12 10 15 15 N 1.46508 * 113.66423 * 270.26262 * 13 12 10 16 16 C 1.34773 * 119.99818 * 252.19151 * 15 13 12 17 17 O 1.21690 * 120.00256 * 359.97438 * 16 15 13 18 18 C 1.46718 * 120.00171 * 179.97438 * 16 15 13 19 19 O 1.35343 * 126.64297 * 0.02562 * 18 16 15 20 20 C 1.33666 * 107.68718 * 179.97438 * 19 18 16 21 21 N 1.30618 * 109.15115 * 359.97438 * 20 19 18 22 22 C 1.33693 * 108.99435 * 359.76527 * 21 20 19 23 23 C 1.50701 * 126.27098 * 180.25308 * 22 21 20 24 24 F 1.39895 * 109.46968 * 120.13742 * 23 22 21 25 25 F 1.39904 * 109.47376 * 240.14033 * 23 22 21 26 26 C 1.52909 * 86.78501 * 24.73264 * 13 12 10 27 27 C 1.52910 * 121.13680 * 100.81909 * 26 13 12 28 28 C 1.53949 * 86.78077 * 100.82535 * 27 26 13 29 29 C 1.52905 * 121.13655 * 209.38636 * 26 13 12 30 30 H 0.96992 * 120.00080 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00510 * 0.02562 * 9 7 2 32 32 H 1.09001 * 113.57949 * 335.39525 * 12 10 9 33 33 H 1.08996 * 113.58143 * 106.19185 * 12 10 9 34 34 H 0.96995 * 120.00007 * 72.17985 * 15 13 12 35 35 H 1.08004 * 125.41992 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.47183 * 0.14109 * 23 22 21 37 37 H 1.09006 * 113.66074 * 215.29190 * 27 26 13 38 38 H 1.08994 * 113.66448 * 346.35155 * 27 26 13 39 39 H 1.09009 * 113.57633 * 270.12923 * 28 27 26 40 40 H 1.09000 * 113.65567 * 139.34741 * 28 27 26 41 41 H 1.08990 * 113.66878 * 13.64950 * 29 26 13 42 42 H 1.09000 * 113.66430 * 144.61574 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0673 -3.5649 0.4012 12 6 1.9936 -4.4075 -1.3431 13 6 1.8252 -5.7024 -0.5276 14 1 1.0945 -6.3936 -0.9474 15 7 3.0934 -6.3517 -0.1865 16 6 3.4513 -7.4961 -0.8019 17 8 2.7209 -7.9903 -1.6404 18 6 4.7217 -8.1462 -0.4608 19 8 5.6307 -7.7174 0.4456 20 6 6.6412 -8.5923 0.4525 21 7 6.3925 -9.5410 -0.4102 22 6 5.2120 -9.3027 -0.9908 23 6 4.5469 -10.1545 -2.0411 24 9 3.3073 -10.5965 -1.5668 25 9 4.3591 -9.3992 -3.2037 26 6 1.2657 -4.8230 0.5913 27 6 -0.2402 -4.7137 0.8330 28 6 -0.0385 -5.7074 1.9915 29 6 1.4199 -5.2189 2.0601 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 1.1198 -4.1535 -1.9431 33 1 2.9235 -4.3674 -1.9103 34 1 3.6755 -5.9579 0.4819 35 1 7.5225 -8.5258 1.0733 36 1 5.1781 -11.0146 -2.2646 37 1 -0.5606 -3.7235 1.1569 38 1 -0.8442 -5.1100 0.0169 39 1 -0.1351 -6.7512 1.6924 40 1 -0.6213 -5.4667 2.8806 41 1 2.1419 -6.0187 2.2242 42 1 1.5676 -4.3708 2.7287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078726229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = -44.979126 kcal Electronic energy + Delta-G solvation = -30247.331034 eV Core-core repulsion = 25674.238718 eV Total energy + Delta-G solvation = -4573.092316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.10031 -47.10561 -44.01862 -40.75296 -39.01967 -35.84591 -35.13502 -34.18421 -32.52340 -31.46105 -29.85637 -27.45485 -25.54693 -25.06357 -24.31664 -23.96535 -22.84628 -21.97135 -21.09706 -20.26129 -19.07492 -18.01892 -17.73688 -17.55805 -17.45148 -17.13330 -16.95239 -16.08661 -15.83864 -15.39339 -15.09783 -14.71438 -14.59614 -14.49839 -13.95936 -13.91058 -13.51045 -13.43522 -12.99025 -12.74958 -12.54412 -12.21220 -12.11676 -11.91400 -11.74061 -11.72451 -11.44585 -11.39322 -10.99029 -10.89160 -10.73509 -10.50310 -10.23039 -10.12986 -9.94696 -9.74078 -9.72616 -9.44107 -8.92917 -8.86716 -7.01101 -5.83892 -3.12498 0.22785 1.76145 1.86495 2.73520 2.84781 2.94774 3.38713 3.44694 3.46810 3.75219 3.93094 4.15042 4.53076 4.61747 4.67024 4.76558 4.84605 4.90200 4.96255 4.98525 5.14199 5.17703 5.37981 5.38913 5.59295 5.72198 5.86367 5.94985 5.99007 6.02562 6.13796 6.17180 6.28667 6.33815 6.38310 6.55271 6.72254 6.79525 6.87322 6.96272 7.29370 7.64577 7.84340 8.34761 9.46554 10.03617 10.38536 11.38401 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.002866 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.714173 B = 9768.051562 C =10274.458603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.707 5.707 10 C 0.180 3.820 11 H 0.075 0.925 12 C -0.174 4.174 13 C 0.140 3.860 14 H 0.102 0.898 15 N -0.685 5.685 16 C 0.597 3.403 17 O -0.492 6.492 18 C -0.042 4.042 19 O -0.180 6.180 20 C 0.208 3.792 21 N -0.472 5.472 22 C -0.021 4.021 23 C 0.362 3.638 24 F -0.182 7.182 25 F -0.181 7.181 26 C -0.125 4.125 27 C -0.103 4.103 28 C -0.140 4.140 29 C -0.123 4.123 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.406 0.594 35 H 0.265 0.735 36 H 0.131 0.869 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.883 -20.453 2.725 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.345 5.345 10 C 0.067 3.933 11 H 0.092 0.908 12 C -0.216 4.216 13 C 0.035 3.965 14 H 0.120 0.880 15 N -0.334 5.334 16 C 0.379 3.621 17 O -0.367 6.367 18 C -0.100 4.100 19 O -0.065 6.065 20 C -0.018 4.018 21 N -0.199 5.199 22 C -0.146 4.146 23 C 0.307 3.693 24 F -0.163 7.163 25 F -0.162 7.162 26 C -0.128 4.128 27 C -0.141 4.141 28 C -0.178 4.178 29 C -0.161 4.161 30 H 0.065 0.935 31 H 0.223 0.777 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.241 0.759 35 H 0.280 0.720 36 H 0.148 0.852 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.813 -21.047 2.031 23.749 hybrid contribution 0.246 1.752 0.529 1.847 sum 11.059 -19.295 2.561 22.387 Atomic orbital electron populations 1.69657 1.05108 1.25700 1.57367 1.24750 0.95507 0.97740 1.02715 0.86136 0.78796 0.84133 0.77214 1.20569 1.21824 1.21855 1.19327 0.91070 0.84182 1.43016 0.91121 1.42362 1.05897 0.99566 1.86695 1.21397 0.94677 0.85104 0.92089 0.90750 1.24324 1.02225 0.94717 1.00310 1.21673 0.84117 0.93785 0.96896 0.87967 1.45494 1.22682 1.23521 1.41729 1.16315 0.82209 0.81196 0.82336 1.90984 1.49984 1.63994 1.31718 1.23344 0.93620 0.97812 0.95180 1.84582 1.26709 1.46826 1.48375 1.28422 0.92609 0.83350 0.97424 1.70160 1.13901 1.26399 1.09473 1.22414 0.93849 0.96274 1.02014 1.19185 0.81881 0.90343 0.77885 1.93069 1.45227 1.89388 1.88630 1.93082 1.95715 1.78644 1.48750 1.23451 0.98146 0.97636 0.93543 1.22466 0.93435 1.00439 0.97785 1.22834 0.97042 0.98859 0.99045 1.22638 0.96581 1.00450 0.96400 0.93452 0.77732 0.89177 0.92145 0.75882 0.71989 0.85196 0.88300 0.91695 0.90923 0.91790 0.92437 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -16.73 5.30 -52.98 -0.28 -17.01 16 10 C 0.18 3.34 4.27 -67.48 -0.29 3.05 16 11 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 12 C -0.17 -2.99 7.68 -25.75 -0.20 -3.18 16 13 C 0.14 2.08 4.12 -67.48 -0.28 1.80 16 14 H 0.10 1.60 7.46 -51.93 -0.39 1.21 16 15 N -0.68 -8.94 4.80 -54.66 -0.26 -9.20 16 16 C 0.60 8.39 7.79 -12.84 -0.10 8.29 16 17 O -0.49 -8.30 13.53 5.20 0.07 -8.23 16 18 C -0.04 -0.50 7.18 -36.84 -0.26 -0.76 16 19 O -0.18 -1.64 10.57 4.42 0.05 -1.60 16 20 C 0.21 1.36 13.21 52.25 0.69 2.05 16 21 N -0.47 -4.49 11.26 -10.88 -0.12 -4.61 16 22 C -0.02 -0.24 6.59 -82.47 -0.54 -0.78 16 23 C 0.36 4.03 5.10 36.01 0.18 4.21 16 24 F -0.18 -2.39 16.21 2.25 0.04 -2.35 16 25 F -0.18 -2.44 16.19 2.25 0.04 -2.40 16 26 C -0.13 -1.91 0.92 -154.71 -0.14 -2.06 16 27 C -0.10 -1.59 7.15 -26.28 -0.19 -1.78 16 28 C -0.14 -1.85 8.08 -25.75 -0.21 -2.06 16 29 C -0.12 -1.68 7.62 -26.28 -0.20 -1.88 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.39 9.70 6.23 -40.82 -0.25 9.45 16 32 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.41 4.62 8.22 -40.82 -0.34 4.29 16 35 H 0.26 0.18 8.06 -52.48 -0.42 -0.24 16 36 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 1.76 7.03 -51.93 -0.36 1.39 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.69 7.58 -51.93 -0.39 0.30 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -32.86 362.78 -6.18 -39.04 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.08 Total: 10.78 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.78 Total: -0.18 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.06 Total: -57.34 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.12 Total: -9.82 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.07 Total: -4.76 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.86 -6.18 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078726229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.943 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds