Wall clock time and date at job start Sat Apr 11 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30211 * 126.79149 * 2 1 4 4 O 1.20919 * 111.64670 * 180.02562 * 3 2 1 5 5 C 1.34067 * 111.55369 * 359.75851 * 4 3 2 6 6 Cl 1.73598 * 126.79753 * 180.25906 * 5 4 3 7 7 C 1.35680 * 106.40316 * 0.38204 * 5 4 3 8 8 C 1.50703 * 128.00972 * 179.91041 * 7 5 4 9 9 C 1.50700 * 109.47148 * 269.67793 * 8 7 5 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.28037 * 9 8 7 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 H 1.09007 * 109.47747 * 35.00142 * 12 11 9 14 14 C 1.53001 * 109.47313 * 274.99614 * 12 11 9 15 15 C 1.52998 * 109.47229 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47099 * 59.99781 * 15 14 12 17 17 C 1.52999 * 109.47579 * 300.00018 * 16 15 14 18 18 C 1.52998 * 109.46921 * 59.99872 * 17 16 15 19 19 H 1.09002 * 109.47122 * 60.00484 * 18 17 16 20 20 N 1.46495 * 109.47100 * 180.02562 * 18 17 16 21 21 C 1.36943 * 119.99657 * 275.00029 * 20 18 17 22 22 H 1.07991 * 120.00284 * 0.02562 * 21 20 18 23 23 C 1.38818 * 119.99387 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00482 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99522 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47191 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47379 * 119.99972 * 25 23 21 28 28 H 1.48499 * 109.47215 * 240.00221 * 25 23 21 29 29 H 1.09001 * 109.47476 * 269.97642 * 1 2 3 30 30 H 1.08996 * 109.47117 * 29.97423 * 1 2 3 31 31 H 1.09001 * 109.47291 * 149.97910 * 1 2 3 32 32 H 1.09009 * 109.46601 * 149.67814 * 8 7 5 33 33 H 1.08998 * 109.47035 * 29.68322 * 8 7 5 34 34 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 35 35 H 1.09002 * 109.46839 * 300.00218 * 14 12 11 36 36 H 1.08998 * 109.46617 * 60.00312 * 14 12 11 37 37 H 1.09002 * 109.47122 * 299.99718 * 15 14 12 38 38 H 1.09001 * 109.47069 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.46911 * 179.97438 * 16 15 14 40 40 H 1.08999 * 109.46702 * 60.00552 * 16 15 14 41 41 H 1.09002 * 109.46828 * 300.00177 * 17 16 15 42 42 H 1.08998 * 109.46936 * 179.97438 * 17 16 15 43 43 H 0.97002 * 120.00226 * 95.00154 * 20 18 17 44 44 H 0.96993 * 119.99866 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7268 -0.0005 5 6 3.6036 -0.6054 0.0043 6 17 5.1011 -1.4836 0.0118 7 6 2.3530 -1.1315 -0.0005 8 6 1.9579 -2.5858 0.0000 9 6 1.8250 -3.0708 -1.4206 10 8 2.0313 -2.3105 -2.3427 11 7 1.4720 -4.3481 -1.6663 12 6 1.3369 -4.8179 -3.0473 13 1 2.0815 -4.3258 -3.6731 14 6 -0.0641 -4.4854 -3.5645 15 6 -0.2054 -4.9766 -5.0066 16 6 0.0094 -6.4907 -5.0529 17 6 1.4104 -6.8233 -4.5358 18 6 1.5516 -6.3321 -3.0937 19 1 0.8071 -6.8240 -2.4678 20 7 2.8933 -6.6500 -2.5988 21 6 3.1514 -7.8844 -2.0648 22 1 2.3661 -8.6235 -2.0091 23 6 4.4229 -8.1857 -1.5963 24 7 5.3802 -7.2850 -1.6648 25 14 4.7752 -9.8697 -0.8687 26 1 3.5405 -10.6938 -0.9072 27 1 5.8403 -10.5376 -1.6591 28 1 5.2251 -9.7168 0.5382 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.0042 -2.7030 0.5148 33 1 2.7220 -3.1697 0.5134 34 1 1.3074 -4.9562 -0.9288 35 1 -0.8087 -4.9776 -2.9388 36 1 -0.2171 -3.4067 -3.5311 37 1 0.5392 -4.4847 -5.6325 38 1 -1.2036 -4.7401 -5.3748 39 1 -0.0917 -6.8407 -6.0803 40 1 -0.7352 -6.9826 -4.4270 41 1 2.1549 -6.3314 -5.1618 42 1 1.5631 -7.9021 -4.5684 43 1 3.5988 -5.9862 -2.6492 44 1 6.2685 -7.4955 -1.3370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085363012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:14 Heat of formation + Delta-G solvation = 14.970163 kcal Electronic energy + Delta-G solvation = -28110.375983 eV Core-core repulsion = 24091.679944 eV Total energy + Delta-G solvation = -4018.696039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.10611 -39.79080 -37.95690 -37.18010 -35.38624 -34.07888 -33.74310 -32.48536 -31.18354 -29.89401 -28.98345 -28.44707 -27.38478 -23.77145 -22.93663 -21.73762 -21.50350 -21.08387 -20.10506 -19.46202 -17.95730 -17.80971 -17.24473 -16.61121 -16.08918 -15.62464 -15.03103 -14.73051 -14.18512 -13.98812 -13.78895 -13.68510 -13.55482 -13.35792 -13.20412 -12.96607 -12.84245 -12.66926 -12.46094 -12.39336 -12.12648 -12.03798 -11.77143 -11.11900 -10.96995 -10.95151 -10.86762 -10.78870 -10.59341 -10.35723 -10.17398 -10.13471 -9.80200 -9.68745 -9.61162 -9.19069 -8.95599 -8.61439 -7.02882 -5.82519 -3.12236 1.04481 1.18104 1.95518 2.90283 3.37475 3.42875 3.43878 3.46090 3.62306 3.92407 4.42375 4.51504 4.71022 4.79828 5.01820 5.04297 5.13803 5.25729 5.29656 5.31113 5.45846 5.48064 5.49363 5.52177 5.57502 5.68861 5.79113 5.86300 5.90707 5.93012 5.94872 6.09016 6.28636 6.42905 6.45003 6.47988 6.55533 6.82824 6.87051 7.05421 7.64011 7.86631 7.97458 8.34589 8.53573 9.46713 10.02973 10.38216 11.39348 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009682 B = 0.003941 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.156924 B = 7102.201695 C = 9315.221633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.042 3.958 3 N -0.352 5.352 4 O 0.106 5.894 5 C 0.013 3.987 6 Cl 0.059 6.941 7 C -0.147 4.147 8 C -0.070 4.070 9 C 0.517 3.483 10 O -0.541 6.541 11 N -0.706 5.706 12 C 0.142 3.858 13 H 0.083 0.917 14 C -0.123 4.123 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.173 3.827 19 H 0.051 0.949 20 N -0.722 5.722 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.404 0.596 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.385 0.615 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.199 10.820 3.213 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 N -0.059 5.059 4 O 0.040 5.960 5 C -0.077 4.077 6 Cl 0.087 6.913 7 C -0.152 4.152 8 C -0.111 4.111 9 C 0.303 3.697 10 O -0.418 6.418 11 N -0.355 5.355 12 C 0.036 3.964 13 H 0.102 0.898 14 C -0.162 4.162 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.174 4.174 18 C 0.063 3.937 19 H 0.068 0.932 20 N -0.362 5.362 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.206 4.206 24 N -0.576 5.576 25 Si 0.734 3.266 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.238 0.762 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.219 0.781 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.099 12.415 2.637 16.860 hybrid contribution 0.800 -1.991 0.665 2.247 sum -10.299 10.423 3.302 15.021 Atomic orbital electron populations 1.20196 0.85405 1.04295 1.03381 1.23209 0.98957 0.87842 1.01622 1.73886 0.88571 1.22985 1.20494 1.84879 1.22064 1.20746 1.68263 1.24607 0.91483 0.84760 1.06867 1.98499 1.27803 1.68469 1.96519 1.20106 0.90072 0.96808 1.08231 1.20004 1.04958 0.89586 0.96520 1.20183 0.76736 0.82407 0.90416 1.90700 1.50097 1.55070 1.45963 1.45855 1.69302 1.10925 1.09416 1.21298 0.96682 0.96211 0.82169 0.89844 1.21862 0.97016 1.00840 0.96484 1.21471 1.01030 0.96397 0.96310 1.21579 0.98350 0.95374 1.00437 1.22223 0.94946 1.01794 0.98471 1.20461 0.89641 0.90222 0.93399 0.93152 1.42427 1.06264 1.15038 1.72515 1.19242 0.94980 0.90845 1.32089 0.91164 1.24721 0.96101 0.97767 1.02003 1.69677 1.02169 1.33491 1.52288 0.86188 0.77818 0.84017 0.78548 1.20594 1.21938 1.21929 0.89854 0.90200 0.89765 0.87169 0.86819 0.76169 0.92043 0.92017 0.92005 0.92423 0.92712 0.92393 0.92483 0.91616 0.78126 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.39 36.00 0.37 -0.31 16 2 C 0.04 0.55 7.32 -82.12 -0.60 -0.06 16 3 N -0.35 -5.06 12.07 33.43 0.40 -4.66 16 4 O 0.11 1.53 11.20 17.11 0.19 1.73 16 5 C 0.01 0.18 8.12 29.82 0.24 0.42 16 6 Cl 0.06 0.80 29.23 -51.86 -1.52 -0.71 16 7 C -0.15 -1.96 4.82 -104.38 -0.50 -2.47 16 8 C -0.07 -0.84 6.10 -29.03 -0.18 -1.01 16 9 C 0.52 7.87 7.79 -10.98 -0.09 7.78 16 10 O -0.54 -10.16 15.70 5.55 0.09 -10.07 16 11 N -0.71 -10.44 4.91 -53.80 -0.26 -10.70 16 12 C 0.14 2.26 1.98 -67.93 -0.13 2.13 16 13 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 14 C -0.12 -1.63 5.49 -26.73 -0.15 -1.78 16 15 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 16 C -0.12 -1.57 5.92 -26.73 -0.16 -1.72 16 17 C -0.13 -2.23 5.50 -26.73 -0.15 -2.38 16 18 C 0.17 3.10 2.29 -67.93 -0.16 2.94 16 19 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 20 N -0.72 -16.55 4.95 -53.42 -0.26 -16.81 16 21 C -0.24 -6.17 9.93 -15.05 -0.15 -6.32 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -26.82 13.06 55.49 0.72 -26.09 16 25 Si 0.90 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.11 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.40 5.50 8.60 -40.82 -0.35 5.15 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -31.03 383.11 -8.31 -39.34 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.52 Total: 10.54 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.90 Total: -4.70 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.60 Total: -58.27 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.28 Total: -8.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: 0.80 SS G_CDS: -1.52 Total: -0.71 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.03 -8.31 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085363012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.305 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds