Wall clock time and date at job start Sat Apr 11 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46921 * 2 1 4 4 H 1.08998 * 109.99945 * 304.65020 * 3 2 1 5 5 C 1.54335 * 109.99171 * 183.61638 * 3 2 1 6 6 H 1.09001 * 110.51047 * 336.97613 * 5 3 2 7 7 N 1.46500 * 111.00101 * 100.12317 * 5 3 2 8 8 C 1.34772 * 119.99808 * 200.23638 * 7 5 3 9 9 O 1.21284 * 120.00530 * 359.97438 * 8 7 5 10 10 C 1.50705 * 119.99939 * 180.02562 * 8 7 5 11 11 C 1.50705 * 109.46990 * 180.02562 * 10 8 7 12 12 C 1.41277 * 128.01323 * 89.99792 * 11 10 8 13 13 C 1.50702 * 126.79323 * 359.94176 * 12 11 10 14 14 N 1.30216 * 106.42258 * 179.97438 * 12 11 10 15 15 O 1.20924 * 111.64563 * 0.02562 * 14 12 11 16 16 C 1.34066 * 111.54994 * 359.75925 * 15 14 12 17 17 Cl 1.73603 * 126.79793 * 180.25626 * 16 15 14 18 18 C 1.55156 * 103.02205 * 218.66736 * 5 3 2 19 19 C 1.54909 * 101.58184 * 35.30482 * 18 5 3 20 20 N 1.47021 * 109.88367 * 65.74751 * 3 2 1 21 21 C 1.36936 * 125.64939 * 298.39682 * 20 3 2 22 22 H 1.07994 * 119.99899 * 333.64512 * 21 20 3 23 23 C 1.38814 * 119.99868 * 153.64803 * 21 20 3 24 24 N 1.31618 * 119.99914 * 334.80655 * 23 21 20 25 25 Si 1.86805 * 119.99887 * 154.81215 * 23 21 20 26 26 H 1.48500 * 109.47128 * 59.99576 * 25 23 21 27 27 H 1.48507 * 109.46958 * 299.99427 * 25 23 21 28 28 H 1.48500 * 109.46975 * 179.97438 * 25 23 21 29 29 H 1.09007 * 109.46718 * 171.76237 * 1 2 3 30 30 H 1.08999 * 109.47151 * 291.76096 * 1 2 3 31 31 H 1.08994 * 109.47051 * 51.76281 * 1 2 3 32 32 H 1.08996 * 109.46940 * 239.99908 * 2 1 3 33 33 H 1.09003 * 109.47052 * 119.99512 * 2 1 3 34 34 H 0.97000 * 120.00198 * 20.24012 * 7 5 3 35 35 H 1.09003 * 109.46916 * 299.99841 * 10 8 7 36 36 H 1.08992 * 109.47493 * 59.99757 * 10 8 7 37 37 H 1.09002 * 109.46676 * 89.99887 * 13 12 11 38 38 H 1.08997 * 109.47103 * 209.99614 * 13 12 11 39 39 H 1.08996 * 109.46681 * 330.00489 * 13 12 11 40 40 H 1.09000 * 110.99920 * 277.23246 * 18 5 3 41 41 H 1.08994 * 111.03784 * 153.39760 * 18 5 3 42 42 H 1.09003 * 110.36185 * 204.15983 * 19 18 5 43 43 H 1.08998 * 110.45892 * 81.88084 * 19 18 5 44 44 H 0.96999 * 120.00363 * 353.73557 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6152 1.9881 -0.8426 5 6 3.5805 1.4575 -0.0915 6 1 3.9935 0.5135 0.2641 7 7 4.0225 1.7313 -1.4611 8 6 5.2691 1.3942 -1.8470 9 8 6.0251 0.8647 -1.0603 10 6 5.7239 1.6763 -3.2558 11 6 7.1452 1.2059 -3.4284 12 6 7.5960 -0.0657 -3.8477 13 6 6.7403 -1.2494 -4.2189 14 7 8.8971 -0.0130 -3.8493 15 8 9.2999 1.0730 -3.5020 16 6 8.2883 1.9070 -3.2218 17 17 8.4158 3.5565 -2.6959 18 6 3.9757 2.6210 0.8558 19 6 2.9043 2.4945 1.9676 20 7 1.6712 2.1032 1.2605 21 6 0.3940 2.3148 1.7069 22 1 -0.4187 2.3944 1.0001 23 6 0.1440 2.4270 3.0677 24 7 0.9589 1.8649 3.9350 25 14 -1.3491 3.3756 3.6679 26 1 -2.5829 2.7509 3.1267 27 1 -1.2615 4.7830 3.2021 28 1 -1.3902 3.3466 5.1520 29 1 -0.3633 -1.0171 -0.1473 30 1 -0.3633 0.3810 0.9544 31 1 -0.3633 0.6360 -0.8071 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.4180 2.1552 -2.0903 35 1 5.0790 1.1485 -3.9584 36 1 5.6697 2.7479 -3.4474 37 1 6.5194 -1.2176 -5.2858 38 1 7.2739 -2.1708 -3.9856 39 1 5.8089 -1.2157 -3.6539 40 1 3.8992 3.5820 0.3472 41 1 4.9772 2.4738 1.2598 42 1 2.7655 3.4511 2.4712 43 1 3.1898 1.7261 2.6860 44 1 1.6814 1.2971 3.6243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087761821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:17 Heat of formation + Delta-G solvation = 37.311937 kcal Electronic energy + Delta-G solvation = -27934.255542 eV Core-core repulsion = 23916.528315 eV Total energy + Delta-G solvation = -4017.727227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -45.31871 -39.91175 -38.03226 -37.48828 -35.60493 -34.26939 -32.78258 -32.59860 -31.94269 -29.58638 -28.99180 -28.31221 -26.77331 -24.44157 -22.74609 -21.84395 -21.74692 -20.73436 -20.31418 -19.50604 -18.16889 -18.00403 -17.41325 -16.93164 -16.26699 -15.80962 -15.12985 -14.61609 -14.32277 -13.89976 -13.80238 -13.67671 -13.56434 -13.38248 -13.17230 -12.99149 -12.93827 -12.70681 -12.60437 -12.44849 -12.17815 -12.02927 -11.66903 -11.19458 -11.12461 -10.94462 -10.78351 -10.52265 -10.35144 -10.26653 -10.16234 -10.07219 -9.89751 -9.85298 -9.45696 -9.43550 -8.81183 -8.42551 -6.93960 -6.08129 -3.25438 0.76186 0.94892 1.75364 2.61190 3.16245 3.36332 3.46256 3.50338 3.67869 3.72688 4.20078 4.49827 4.51406 4.55194 4.80298 5.03590 5.09990 5.16009 5.20625 5.30203 5.31415 5.33438 5.36602 5.39555 5.66575 5.74941 5.89258 5.93143 6.02799 6.11597 6.25041 6.35380 6.46469 6.52918 6.62826 6.74324 6.91573 7.01571 7.07092 7.30064 7.55958 7.78355 7.83897 8.24820 8.46423 8.98618 9.76171 10.34680 11.19521 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.002655 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.343728 B =10542.131533 C =11383.293936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.157 3.843 4 H 0.037 0.963 5 C 0.136 3.864 6 H 0.091 0.909 7 N -0.714 5.714 8 C 0.513 3.487 9 O -0.531 6.531 10 C -0.069 4.069 11 C -0.148 4.148 12 C 0.045 3.955 13 C -0.078 4.078 14 N -0.348 5.348 15 O 0.109 5.891 16 C 0.014 3.986 17 Cl 0.050 6.950 18 C -0.143 4.143 19 C 0.143 3.857 20 N -0.589 5.589 21 C -0.327 4.327 22 H 0.063 0.937 23 C -0.023 4.023 24 N -0.912 5.912 25 Si 1.064 2.936 26 H -0.292 1.292 27 H -0.294 1.294 28 H -0.286 1.286 29 H 0.029 0.971 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.399 0.601 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.030 0.970 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.546 0.127 -18.591 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.050 3.950 4 H 0.054 0.946 5 C 0.031 3.969 6 H 0.109 0.891 7 N -0.365 5.365 8 C 0.298 3.702 9 O -0.407 6.407 10 C -0.109 4.109 11 C -0.154 4.154 12 C -0.114 4.114 13 C -0.135 4.135 14 N -0.055 5.055 15 O 0.043 5.957 16 C -0.077 4.077 17 Cl 0.078 6.922 18 C -0.183 4.183 19 C 0.017 3.983 20 N -0.315 5.315 21 C -0.455 4.455 22 H 0.081 0.919 23 C -0.226 4.226 24 N -0.551 5.551 25 Si 0.893 3.107 26 H -0.220 1.220 27 H -0.221 1.221 28 H -0.211 1.211 29 H 0.048 0.952 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.233 0.767 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.175 -0.411 -16.852 20.225 hybrid contribution -0.104 0.217 -1.452 1.472 sum 11.071 -0.194 -18.304 21.393 Atomic orbital electron populations 1.21889 0.95620 0.98847 1.04234 1.21882 0.97090 0.97601 0.99615 1.21187 0.89582 0.92300 0.91948 0.94572 1.22091 0.95548 0.99065 0.80151 0.89051 1.46010 1.14019 1.62242 1.14220 1.20261 0.82074 0.78812 0.89051 1.90741 1.53366 1.42273 1.54346 1.20004 0.90662 1.04011 0.96264 1.20079 0.95046 0.93360 1.06877 1.23246 0.90498 0.96686 1.00966 1.20234 0.98058 0.92861 1.02368 1.73922 1.13871 0.99418 1.18277 1.84904 1.32458 1.15681 1.62644 1.24492 0.88339 0.89642 1.05184 1.98463 1.98045 1.07913 1.87771 1.23174 0.99365 0.97735 0.98015 1.21547 0.85309 0.98618 0.92788 1.44507 1.01900 1.65352 1.19789 1.19587 0.83769 1.49492 0.92661 0.91924 1.25834 1.03957 1.00456 0.92352 1.70761 1.19009 1.28943 1.36426 0.83543 0.74827 0.76127 0.76175 1.21951 1.22079 1.21127 0.95231 0.88953 0.94299 0.94344 0.92610 0.76655 0.86832 0.87147 0.89708 0.89992 0.89653 0.91637 0.91620 0.93169 0.95265 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.98 37.16 0.33 -2.47 16 2 C -0.12 -2.26 5.47 -26.73 -0.15 -2.40 16 3 C 0.16 2.96 3.00 -66.95 -0.20 2.76 16 4 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 5 C 0.14 2.28 2.76 -66.09 -0.18 2.10 16 6 H 0.09 1.70 7.39 -51.93 -0.38 1.32 16 7 N -0.71 -9.06 5.21 -52.02 -0.27 -9.33 16 8 C 0.51 6.60 7.82 -10.98 -0.09 6.52 16 9 O -0.53 -9.18 15.76 5.55 0.09 -9.09 16 10 C -0.07 -0.61 6.10 -29.03 -0.18 -0.78 16 11 C -0.15 -1.62 4.82 -104.38 -0.50 -2.13 16 12 C 0.04 0.50 7.32 -82.12 -0.60 -0.10 16 13 C -0.08 -0.63 10.39 36.01 0.37 -0.25 16 14 N -0.35 -4.46 12.07 33.44 0.40 -4.06 16 15 O 0.11 1.36 11.20 17.11 0.19 1.55 16 16 C 0.01 0.16 8.12 29.82 0.24 0.40 16 17 Cl 0.05 0.48 29.23 -51.86 -1.52 -1.03 16 18 C -0.14 -2.59 6.77 -24.58 -0.17 -2.76 16 19 C 0.14 3.20 5.57 -2.53 -0.01 3.19 16 20 N -0.59 -13.71 2.92 -162.57 -0.47 -14.18 16 21 C -0.33 -8.45 7.22 -15.06 -0.11 -8.56 16 22 H 0.06 1.62 7.25 -52.49 -0.38 1.24 16 23 C -0.02 -0.62 5.17 -17.43 -0.09 -0.71 16 24 N -0.91 -26.53 13.05 55.49 0.72 -25.80 16 25 Si 1.06 24.39 29.99 -169.99 -5.10 19.29 16 26 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 2.08 5.53 -51.93 -0.29 1.79 16 31 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.40 3.95 8.33 -40.82 -0.34 3.61 16 35 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.03 0.72 6.72 -51.93 -0.35 0.37 16 44 H 0.27 7.93 6.20 -40.82 -0.25 7.68 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -31.92 377.07 -7.86 -39.78 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.26 Total: 2.39 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.33 Total: -5.20 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.38 Total: -53.37 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.28 Total: -7.54 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.10 Total: 19.29 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -1.52 Total: -1.03 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.92 -7.86 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087761821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.092 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds