Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53777 * 111.86072 * 2 1 4 4 N 1.47211 * 106.38031 * 140.61339 * 3 2 1 5 5 C 1.36936 * 126.70502 * 148.74713 * 4 3 2 6 6 H 1.07996 * 119.99821 * 359.97438 * 5 4 3 7 7 C 1.38813 * 120.00187 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99875 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00186 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47177 * 90.00222 * 9 7 5 11 11 H 1.48499 * 109.47036 * 210.00022 * 9 7 5 12 12 H 1.48499 * 109.47021 * 329.99898 * 9 7 5 13 13 C 1.47212 * 106.59336 * 328.71953 * 4 3 2 14 14 C 1.53783 * 106.37507 * 31.28027 * 13 4 3 15 15 H 1.09000 * 111.86066 * 218.42516 * 14 13 4 16 16 C 1.53777 * 109.34536 * 93.95340 * 14 13 4 17 17 N 1.47220 * 106.37440 * 228.51367 * 16 14 13 18 18 C 1.34776 * 126.69996 * 211.26900 * 17 16 14 19 19 O 1.21683 * 119.99615 * 180.02562 * 18 17 16 20 20 C 1.46725 * 119.99982 * 0.02972 * 18 17 16 21 21 O 1.35335 * 126.64463 * 0.02562 * 20 18 17 22 22 C 1.33664 * 107.68687 * 179.97438 * 21 20 18 23 23 N 1.30622 * 109.15396 * 0.02562 * 22 21 20 24 24 C 1.33693 * 108.99306 * 359.97438 * 23 22 21 25 25 C 1.50697 * 126.27521 * 180.02562 * 24 23 22 26 26 F 1.39899 * 109.47149 * 29.95793 * 25 24 23 27 27 F 1.39896 * 109.47596 * 149.95823 * 25 24 23 28 28 C 1.47210 * 106.59471 * 31.53534 * 17 16 14 29 29 H 1.09002 * 109.46891 * 302.05900 * 1 2 3 30 30 H 1.08993 * 109.47324 * 62.06229 * 1 2 3 31 31 H 1.09005 * 109.47003 * 182.06548 * 1 2 3 32 32 H 1.09002 * 110.07626 * 21.37719 * 3 2 1 33 33 H 1.09008 * 110.07239 * 259.84354 * 3 2 1 34 34 H 0.96999 * 120.00023 * 180.02562 * 8 7 5 35 35 H 1.09002 * 110.08167 * 272.04916 * 13 4 3 36 36 H 1.09000 * 110.12583 * 150.53254 * 13 4 3 37 37 H 1.09000 * 110.07547 * 109.29005 * 16 14 13 38 38 H 1.09001 * 110.07632 * 347.74450 * 16 14 13 39 39 H 1.07996 * 125.43082 * 179.73248 * 22 21 20 40 40 H 1.09002 * 109.47211 * 269.95718 * 25 24 23 41 41 H 1.09002 * 110.07353 * 87.69281 * 28 17 16 42 42 H 1.09000 * 110.07414 * 209.23393 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1026 1.4272 0.0000 4 7 3.2703 1.4060 0.8962 5 6 4.4003 2.1716 0.7863 6 1 4.4962 2.8797 -0.0234 7 6 5.4227 2.0374 1.7157 8 7 5.3060 1.1740 2.7023 9 14 6.9639 3.0822 1.5662 10 1 6.7795 4.3474 2.3215 11 1 8.1223 2.3380 2.1226 12 1 7.2152 3.3917 0.1357 13 6 2.9855 0.4016 1.9341 14 6 2.1092 -0.6728 1.2688 15 1 1.3347 -1.0392 1.9425 16 6 3.0040 -1.8117 0.7520 17 7 2.5853 -2.0716 -0.6353 18 6 2.6203 -3.2552 -1.2789 19 8 2.2422 -3.3316 -2.4330 20 6 3.1140 -4.4517 -0.5879 21 8 3.5639 -4.5205 0.6867 22 6 3.9176 -5.7873 0.9246 23 7 3.7052 -6.5005 -0.1489 24 6 3.2083 -5.7096 -1.1054 25 6 2.8230 -6.1311 -2.5000 26 9 2.4052 -7.4661 -2.4849 27 9 1.7794 -5.3211 -2.9604 28 6 2.1270 -0.7848 -1.1842 29 1 -0.3633 0.5455 0.8710 30 1 -0.3633 0.4814 -0.9078 31 1 -0.3633 -1.0271 0.0370 32 1 1.3571 2.1294 0.3732 33 1 2.4095 1.7072 -1.0078 34 1 6.0202 1.0805 3.3519 35 1 2.4481 0.8621 2.7631 36 1 3.9147 -0.0421 2.2916 37 1 2.8607 -2.7052 1.3596 38 1 4.0500 -1.5060 0.7761 39 1 4.3198 -6.1609 1.8547 40 1 3.6828 -6.0268 -3.1618 41 1 2.9684 -0.2396 -1.6118 42 1 1.3642 -0.9528 -1.9445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092016607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = -62.701135 kcal Electronic energy + Delta-G solvation = -31107.381598 eV Core-core repulsion = 26533.520799 eV Total energy + Delta-G solvation = -4573.860800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.97427 -46.96352 -43.78649 -40.27103 -38.43925 -35.65312 -34.92423 -33.00752 -31.45492 -30.87450 -30.10541 -27.67747 -26.35547 -25.78116 -25.25963 -23.89468 -22.61291 -21.95337 -20.24703 -20.20060 -18.87148 -18.07654 -17.81589 -17.16032 -17.04279 -16.87707 -16.71440 -15.93404 -15.64420 -15.49397 -14.75775 -14.56469 -14.31952 -13.86886 -13.74283 -13.58584 -13.40865 -13.26069 -12.95536 -12.87216 -12.49327 -12.23236 -11.92757 -11.86945 -11.77913 -11.49028 -11.37379 -11.14965 -11.00264 -10.90625 -10.82743 -10.33016 -10.19849 -10.08687 -10.01504 -9.85785 -9.64378 -9.46793 -8.81657 -8.53165 -6.99656 -5.76294 -3.20820 0.45880 1.99922 2.11048 2.93248 2.99533 3.18776 3.32668 3.38623 3.39537 3.82736 4.06082 4.28455 4.38676 4.67994 4.77381 4.88482 4.95612 5.04438 5.11862 5.23791 5.37886 5.48818 5.53550 5.58799 5.66768 5.75212 5.84599 5.93599 6.07737 6.15467 6.22925 6.26658 6.28886 6.40394 6.61972 6.67825 6.78909 7.08654 7.27090 7.49750 7.52058 7.69433 7.96053 8.26166 9.09329 9.69882 10.36531 11.25299 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.003493 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.251255 B = 8013.867825 C = 8852.264462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 C 0.144 3.856 4 N -0.595 5.595 5 C -0.219 4.219 6 H 0.079 0.921 7 C -0.010 4.010 8 N -0.922 5.922 9 Si 0.915 3.085 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.141 3.859 14 C -0.115 4.115 15 H 0.079 0.921 16 C 0.108 3.892 17 N -0.595 5.595 18 C 0.605 3.395 19 O -0.503 6.503 20 C -0.042 4.042 21 O -0.172 6.172 22 C 0.202 3.798 23 N -0.470 5.470 24 C -0.022 4.022 25 C 0.357 3.643 26 F -0.192 7.192 27 F -0.163 7.163 28 C 0.127 3.873 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.024 0.976 33 H 0.045 0.955 34 H 0.253 0.747 35 H 0.011 0.989 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.262 0.738 40 H 0.130 0.870 41 H 0.079 0.921 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.323 -12.197 -3.781 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.090 4.090 3 C 0.017 3.983 4 N -0.319 5.319 5 C -0.347 4.347 6 H 0.097 0.903 7 C -0.205 4.205 8 N -0.571 5.571 9 Si 0.746 3.254 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.207 1.207 13 C 0.015 3.985 14 C -0.135 4.135 15 H 0.098 0.902 16 C -0.014 4.014 17 N -0.326 5.326 18 C 0.391 3.609 19 O -0.381 6.381 20 C -0.099 4.099 21 O -0.057 6.057 22 C -0.024 4.024 23 N -0.197 5.197 24 C -0.147 4.147 25 C 0.302 3.698 26 F -0.173 7.173 27 F -0.144 7.144 28 C 0.005 3.995 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.145 0.855 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.278 0.722 40 H 0.147 0.853 41 H 0.097 0.903 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.181 -12.848 -4.351 14.521 hybrid contribution 0.665 1.057 0.441 1.324 sum -4.515 -11.791 -3.910 13.218 Atomic orbital electron populations 1.21649 0.93467 1.01230 1.01848 1.22238 0.95026 0.97508 0.94267 1.21409 0.90174 0.91847 0.94909 1.44499 1.15132 1.44117 1.28109 1.19096 0.92174 1.14175 1.09227 0.90283 1.24747 0.98772 0.99749 0.97264 1.69567 1.33115 1.37996 1.16426 0.86056 0.82431 0.79414 0.77518 1.21574 1.21640 1.20685 1.21992 0.99376 0.87653 0.89498 1.23054 0.97729 0.96410 0.96353 0.90224 1.22546 1.00447 0.98409 0.80029 1.48503 1.61409 1.07407 1.15287 1.15951 0.79611 0.79994 0.85339 1.90987 1.48615 1.83478 1.14987 1.23117 1.06024 0.97387 0.83380 1.84748 1.60417 1.32576 1.27945 1.28480 0.96936 0.76936 1.00012 1.70215 1.16348 1.33633 0.99552 1.22442 1.04163 0.89871 0.98178 1.19315 0.88720 0.72666 0.89097 1.93020 1.91897 1.35169 1.97220 1.93200 1.60336 1.71857 1.89002 1.22277 0.99321 0.81794 0.96122 0.92115 0.92566 0.93069 0.95869 0.93640 0.93584 0.97109 0.85472 0.90873 0.89441 0.72203 0.85321 0.90269 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 8.53 37.16 0.32 -1.34 16 2 C -0.09 -1.42 1.10 -152.55 -0.17 -1.59 16 3 C 0.14 2.73 6.19 -3.25 -0.02 2.71 16 4 N -0.60 -13.89 3.39 -171.13 -0.58 -14.47 16 5 C -0.22 -5.66 10.34 -15.06 -0.16 -5.82 16 6 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 7 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 8 N -0.92 -24.83 10.08 55.49 0.56 -24.27 16 9 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.14 3.06 5.56 -3.25 -0.02 3.04 16 14 C -0.11 -1.96 3.66 -88.83 -0.32 -2.29 16 15 H 0.08 1.23 7.92 -51.93 -0.41 0.82 16 16 C 0.11 1.77 5.96 -3.24 -0.02 1.75 16 17 N -0.60 -9.73 3.32 -172.90 -0.57 -10.30 16 18 C 0.61 9.91 7.80 -12.83 -0.10 9.81 16 19 O -0.50 -9.02 13.36 5.20 0.07 -8.95 16 20 C -0.04 -0.60 6.94 -36.84 -0.26 -0.86 16 21 O -0.17 -2.14 8.02 4.45 0.04 -2.11 16 22 C 0.20 1.94 13.21 52.25 0.69 2.63 16 23 N -0.47 -5.87 11.21 -10.88 -0.12 -5.99 16 24 C -0.02 -0.30 6.78 -82.46 -0.56 -0.85 16 25 C 0.36 4.54 5.63 36.00 0.20 4.74 16 26 F -0.19 -2.55 17.29 2.25 0.04 -2.51 16 27 F -0.16 -2.49 13.49 2.25 0.03 -2.46 16 28 C 0.13 2.05 6.15 -3.08 -0.02 2.03 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.02 0.44 7.87 -51.93 -0.41 0.03 16 33 H 0.05 0.84 7.51 -51.92 -0.39 0.45 16 34 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.13 3.10 4.81 -51.93 -0.25 2.85 16 37 H 0.07 1.07 5.84 -51.93 -0.30 0.77 16 38 H 0.09 1.67 7.40 -51.93 -0.38 1.29 16 39 H 0.26 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.39 7.41 -51.93 -0.38 1.01 16 42 H 0.08 1.18 7.64 -51.93 -0.40 0.79 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -30.88 345.67 -5.89 -36.78 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.01 Total: -0.50 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: -0.53 Total: 13.61 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.72 Total: -55.03 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.11 Total: -11.06 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.07 Total: -4.97 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.88 -5.89 -36.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092016607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.924 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds