Wall clock time and date at job start Sat Apr 11 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53777 * 111.86072 * 2 1 4 4 N 1.47211 * 106.38031 * 140.61339 * 3 2 1 5 5 C 1.36936 * 126.70502 * 148.74713 * 4 3 2 6 6 H 1.07996 * 119.99821 * 359.97438 * 5 4 3 7 7 C 1.38813 * 120.00187 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99875 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00186 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47177 * 90.00222 * 9 7 5 11 11 H 1.48499 * 109.47036 * 210.00022 * 9 7 5 12 12 H 1.48499 * 109.47021 * 329.99898 * 9 7 5 13 13 C 1.47212 * 106.59336 * 328.71953 * 4 3 2 14 14 C 1.53783 * 106.37507 * 31.28027 * 13 4 3 15 15 H 1.09000 * 111.86066 * 218.42516 * 14 13 4 16 16 C 1.53777 * 109.34536 * 93.95340 * 14 13 4 17 17 N 1.47220 * 106.37440 * 228.51367 * 16 14 13 18 18 C 1.34776 * 126.69996 * 211.26900 * 17 16 14 19 19 O 1.21683 * 119.99615 * 180.02562 * 18 17 16 20 20 C 1.46725 * 119.99982 * 0.02972 * 18 17 16 21 21 O 1.35335 * 126.64463 * 0.02562 * 20 18 17 22 22 C 1.33664 * 107.68687 * 179.97438 * 21 20 18 23 23 N 1.30622 * 109.15396 * 0.02562 * 22 21 20 24 24 C 1.33693 * 108.99306 * 359.97438 * 23 22 21 25 25 C 1.50697 * 126.27521 * 180.02562 * 24 23 22 26 26 F 1.39899 * 109.47149 * 29.95793 * 25 24 23 27 27 F 1.39896 * 109.47596 * 149.95823 * 25 24 23 28 28 C 1.47210 * 106.59471 * 31.53534 * 17 16 14 29 29 H 1.09002 * 109.46891 * 302.05900 * 1 2 3 30 30 H 1.08993 * 109.47324 * 62.06229 * 1 2 3 31 31 H 1.09005 * 109.47003 * 182.06548 * 1 2 3 32 32 H 1.09002 * 110.07626 * 21.37719 * 3 2 1 33 33 H 1.09008 * 110.07239 * 259.84354 * 3 2 1 34 34 H 0.96999 * 120.00023 * 180.02562 * 8 7 5 35 35 H 1.09002 * 110.08167 * 272.04916 * 13 4 3 36 36 H 1.09000 * 110.12583 * 150.53254 * 13 4 3 37 37 H 1.09000 * 110.07547 * 109.29005 * 16 14 13 38 38 H 1.09001 * 110.07632 * 347.74450 * 16 14 13 39 39 H 1.07996 * 125.43082 * 179.73248 * 22 21 20 40 40 H 1.09002 * 109.47211 * 269.95718 * 25 24 23 41 41 H 1.09002 * 110.07353 * 87.69281 * 28 17 16 42 42 H 1.09000 * 110.07414 * 209.23393 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1026 1.4272 0.0000 4 7 3.2703 1.4060 0.8962 5 6 4.4003 2.1716 0.7863 6 1 4.4962 2.8797 -0.0234 7 6 5.4227 2.0374 1.7157 8 7 5.3060 1.1740 2.7023 9 14 6.9639 3.0822 1.5662 10 1 6.7795 4.3474 2.3215 11 1 8.1223 2.3380 2.1226 12 1 7.2152 3.3917 0.1357 13 6 2.9855 0.4016 1.9341 14 6 2.1092 -0.6728 1.2688 15 1 1.3347 -1.0392 1.9425 16 6 3.0040 -1.8117 0.7520 17 7 2.5853 -2.0716 -0.6353 18 6 2.6203 -3.2552 -1.2789 19 8 2.2422 -3.3316 -2.4330 20 6 3.1140 -4.4517 -0.5879 21 8 3.5639 -4.5205 0.6867 22 6 3.9176 -5.7873 0.9246 23 7 3.7052 -6.5005 -0.1489 24 6 3.2083 -5.7096 -1.1054 25 6 2.8230 -6.1311 -2.5000 26 9 2.4052 -7.4661 -2.4849 27 9 1.7794 -5.3211 -2.9604 28 6 2.1270 -0.7848 -1.1842 29 1 -0.3633 0.5455 0.8710 30 1 -0.3633 0.4814 -0.9078 31 1 -0.3633 -1.0271 0.0370 32 1 1.3571 2.1294 0.3732 33 1 2.4095 1.7072 -1.0078 34 1 6.0202 1.0805 3.3519 35 1 2.4481 0.8621 2.7631 36 1 3.9147 -0.0421 2.2916 37 1 2.8607 -2.7052 1.3596 38 1 4.0500 -1.5060 0.7761 39 1 4.3198 -6.1609 1.8547 40 1 3.6828 -6.0268 -3.1618 41 1 2.9684 -0.2396 -1.6118 42 1 1.3642 -0.9528 -1.9445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092016607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:45 Heat of formation + Delta-G solvation = -83.899782 kcal Electronic energy + Delta-G solvation = -31108.300841 eV Core-core repulsion = 26533.520799 eV Total energy + Delta-G solvation = -4574.780042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.01009 -48.01641 -44.72907 -41.62216 -39.79209 -36.85043 -36.25586 -34.58003 -32.70393 -32.23273 -31.68765 -28.77652 -27.78274 -27.17799 -26.76836 -24.98819 -23.97832 -23.01427 -21.86940 -21.35341 -20.26526 -19.12618 -18.81937 -18.72934 -18.13977 -18.08173 -17.88167 -17.12048 -16.90217 -16.61711 -16.53596 -15.87861 -15.51681 -15.36971 -15.01958 -14.85867 -14.71330 -14.40972 -14.27758 -14.02456 -13.82929 -13.56866 -13.34628 -13.28270 -12.98548 -12.88553 -12.74509 -12.53079 -12.42892 -12.35934 -12.12172 -11.92914 -11.83412 -11.54933 -11.48291 -11.36289 -11.22732 -10.74434 -10.48176 -9.83883 -8.88115 -7.73244 -5.19313 -0.56149 1.10845 1.13630 1.49164 1.49750 1.57622 1.72403 1.82873 2.29825 2.50759 2.92672 3.10013 3.18949 3.33526 3.50603 3.61258 3.72618 3.76410 3.93425 3.99839 4.03197 4.20504 4.23429 4.29093 4.36874 4.54907 4.68367 4.76610 4.81168 4.84491 4.93740 4.97204 4.98598 5.15674 5.22406 5.26400 5.41070 5.53286 5.55904 5.85016 6.13867 6.27048 6.39743 6.71645 7.14146 7.79809 8.46563 9.25695 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.003493 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.251255 B = 8013.867825 C = 8852.264462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C 0.140 3.860 4 N -0.616 5.616 5 C -0.231 4.231 6 H 0.079 0.921 7 C -0.059 4.059 8 N -0.942 5.942 9 Si 0.972 3.028 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.274 1.274 13 C 0.146 3.854 14 C -0.106 4.106 15 H 0.104 0.896 16 C 0.121 3.879 17 N -0.598 5.598 18 C 0.606 3.394 19 O -0.523 6.523 20 C -0.071 4.071 21 O -0.180 6.180 22 C 0.235 3.765 23 N -0.497 5.497 24 C -0.015 4.015 25 C 0.350 3.650 26 F -0.196 7.196 27 F -0.179 7.179 28 C 0.129 3.871 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.248 0.752 35 H -0.011 1.011 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.316 0.684 40 H 0.161 0.839 41 H 0.059 0.941 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 -13.424 -3.720 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.079 4.079 3 C 0.014 3.986 4 N -0.340 5.340 5 C -0.360 4.360 6 H 0.097 0.903 7 C -0.252 4.252 8 N -0.592 5.592 9 Si 0.802 3.198 10 H -0.217 1.217 11 H -0.220 1.220 12 H -0.199 1.199 13 C 0.020 3.980 14 C -0.126 4.126 15 H 0.122 0.878 16 C -0.001 4.001 17 N -0.329 5.329 18 C 0.394 3.606 19 O -0.402 6.402 20 C -0.128 4.128 21 O -0.066 6.066 22 C 0.010 3.990 23 N -0.224 5.224 24 C -0.139 4.139 25 C 0.296 3.704 26 F -0.177 7.177 27 F -0.160 7.160 28 C 0.007 3.993 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.007 0.993 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.330 0.670 40 H 0.178 0.822 41 H 0.077 0.923 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.702 -14.084 -4.315 15.795 hybrid contribution 0.853 1.378 0.460 1.684 sum -4.849 -12.707 -3.855 14.136 Atomic orbital electron populations 1.21612 0.90681 1.02214 1.02971 1.22169 0.96978 0.95209 0.93527 1.21569 0.88971 0.93929 0.94113 1.44731 1.15726 1.44293 1.29249 1.19393 0.93244 1.14333 1.09044 0.90307 1.25438 1.01234 1.01113 0.97414 1.69801 1.33452 1.39081 1.16881 0.85163 0.79303 0.77798 0.77569 1.21660 1.22016 1.19938 1.21770 0.98708 0.88321 0.89219 1.22937 0.97567 0.95243 0.96857 0.87821 1.22277 0.98366 0.98913 0.80575 1.48480 1.61712 1.07567 1.15126 1.16136 0.79005 0.80309 0.85182 1.90967 1.49472 1.83969 1.15808 1.22657 1.08764 0.96883 0.84517 1.84727 1.60766 1.34007 1.27097 1.29775 0.93207 0.75399 1.00605 1.70282 1.17885 1.34007 1.00234 1.22612 1.03007 0.89748 0.98581 1.19713 0.89080 0.72073 0.89543 1.93007 1.92024 1.35438 1.97256 1.93161 1.61271 1.72396 1.89200 1.22197 0.98891 0.81817 0.96395 0.91609 0.90973 0.92045 0.95356 0.93522 0.94206 0.99331 0.88143 0.88783 0.92671 0.66985 0.82188 0.92276 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 8.53 71.98 0.61 -2.20 16 2 C -0.08 -2.38 1.10 -50.91 -0.06 -2.43 16 3 C 0.14 5.28 6.19 86.51 0.54 5.81 16 4 N -0.62 -29.25 3.39 -695.34 -2.36 -31.61 16 5 C -0.23 -12.20 10.34 84.03 0.87 -11.33 16 6 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 7 C -0.06 -3.16 5.49 84.86 0.47 -2.69 16 8 N -0.94 -52.05 10.08 21.65 0.22 -51.83 16 9 Si 0.97 43.70 29.55 68.60 2.03 45.72 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.15 6.46 5.56 86.51 0.48 6.94 16 14 C -0.11 -3.52 3.66 -9.63 -0.04 -3.56 16 15 H 0.10 2.99 7.92 -2.39 -0.02 2.97 16 16 C 0.12 3.91 5.96 86.50 0.52 4.43 16 17 N -0.60 -19.14 3.32 -819.17 -2.72 -21.86 16 18 C 0.61 19.41 7.80 86.46 0.67 20.09 16 19 O -0.52 -18.47 13.36 -4.29 -0.06 -18.53 16 20 C -0.07 -1.96 6.94 24.05 0.17 -1.79 16 21 O -0.18 -4.10 8.02 -7.00 -0.06 -4.15 16 22 C 0.23 3.73 13.21 130.42 1.72 5.45 16 23 N -0.50 -11.17 11.21 -303.12 -3.40 -14.56 16 24 C -0.01 -0.38 6.78 41.83 0.28 -0.10 16 25 C 0.35 8.46 5.63 71.24 0.40 8.87 16 26 F -0.20 -4.97 17.29 44.97 0.78 -4.19 16 27 F -0.18 -5.35 13.49 44.97 0.61 -4.74 16 28 C 0.13 4.09 6.15 86.62 0.53 4.62 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.38 8.14 -2.38 -0.02 1.37 16 32 H 0.03 1.05 7.87 -2.39 -0.02 1.03 16 33 H 0.05 1.72 7.51 -2.38 -0.02 1.71 16 34 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 35 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.10 5.07 4.81 -2.39 -0.01 5.06 16 37 H 0.09 2.63 5.84 -2.39 -0.01 2.62 16 38 H 0.05 2.16 7.40 -2.39 -0.02 2.14 16 39 H 0.32 0.88 8.06 -2.91 -0.02 0.85 16 40 H 0.16 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.06 2.10 7.41 -2.39 -0.02 2.08 16 42 H 0.09 2.61 7.64 -2.39 -0.02 2.60 16 Total: -1.00 -68.60 345.67 3.29 -65.31 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.07 Total: 8.33 kcal Atomic # 6 Polarization: 24.93 SS G_CDS: 7.17 Total: 32.10 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -8.26 Total: -119.85 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.11 Total: -22.69 kcal Atomic # 9 Polarization: -10.32 SS G_CDS: 1.38 Total: -8.93 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -68.60 3.29 -65.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092016607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.585 kcal (2) G-P(sol) polarization free energy of solvation -68.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds