Wall clock time and date at job start Sat Apr 11 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30016 * 127.33552 * 2 1 4 4 O 1.20655 * 112.29721 * 180.29126 * 3 2 1 5 5 C 1.33485 * 113.16225 * 359.73883 * 4 3 2 6 6 C 1.50701 * 126.83432 * 179.97438 * 5 4 3 7 7 F 1.39902 * 109.46673 * 30.02662 * 6 5 4 8 8 F 1.39901 * 109.47511 * 150.02290 * 6 5 4 9 9 C 1.37364 * 106.34007 * 359.97438 * 5 4 3 10 10 C 1.47396 * 128.56183 * 179.97438 * 9 5 4 11 11 O 1.21609 * 120.00063 * 89.73119 * 10 9 5 12 12 N 1.34784 * 120.00271 * 269.99694 * 10 9 5 13 13 C 1.46496 * 119.99947 * 180.02562 * 12 10 9 14 14 H 1.08993 * 110.56003 * 32.69060 * 13 12 10 15 15 C 1.54849 * 110.62417 * 155.59238 * 13 12 10 16 16 C 1.55844 * 103.45027 * 118.48788 * 15 13 12 17 17 H 1.08998 * 115.56263 * 158.81243 * 16 15 13 18 18 C 1.55845 * 105.06077 * 288.17505 * 16 15 13 19 19 C 1.54850 * 103.44726 * 71.82347 * 18 16 15 20 20 C 1.55846 * 110.62693 * 269.61245 * 13 12 10 21 21 H 1.08998 * 115.55749 * 82.69831 * 20 13 12 22 22 N 1.50232 * 101.05385 * 208.57478 * 20 13 12 23 23 C 1.36937 * 130.84415 * 233.97254 * 22 20 13 24 24 H 1.07998 * 119.99172 * 359.97194 * 23 22 20 25 25 C 1.38803 * 120.00386 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00200 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99966 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46962 * 60.00303 * 27 25 23 29 29 H 1.48502 * 109.47178 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47585 * 300.00042 * 27 25 23 31 31 H 1.09004 * 109.47030 * 270.12144 * 1 2 3 32 32 H 1.09005 * 109.47303 * 30.12061 * 1 2 3 33 33 H 1.08998 * 109.47474 * 150.12505 * 1 2 3 34 34 H 1.08996 * 109.47524 * 270.03158 * 6 5 4 35 35 H 0.96997 * 119.99446 * 0.02562 * 12 10 9 36 36 H 1.09004 * 110.62764 * 236.97522 * 15 13 12 37 37 H 1.09007 * 110.62953 * 359.83838 * 15 13 12 38 38 H 1.09002 * 110.62112 * 190.30977 * 18 16 15 39 39 H 1.08994 * 110.63172 * 313.33116 * 18 16 15 40 40 H 1.08995 * 110.62773 * 241.50926 * 19 18 16 41 41 H 1.09004 * 110.76621 * 118.54843 * 19 18 16 42 42 H 0.97001 * 120.00234 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7207 -0.0057 5 6 3.6494 -0.6007 -0.0049 6 6 4.9711 -1.3247 -0.0114 7 9 5.9323 -0.5461 0.6421 8 9 4.8351 -2.5499 0.6501 9 6 2.3991 -1.1696 0.0030 10 6 2.0401 -2.5992 0.0065 11 8 1.9030 -3.1891 1.0610 12 7 1.8691 -3.2540 -1.1592 13 6 1.5117 -4.6747 -1.1556 14 1 0.8887 -4.9105 -0.2929 15 6 0.7904 -5.0590 -2.4708 16 6 1.7331 -6.1270 -3.1026 17 1 1.2699 -6.7898 -3.8335 18 6 2.9787 -5.3287 -3.5924 19 6 3.7002 -4.9444 -2.2772 20 6 2.7922 -5.5629 -1.1718 21 1 3.2617 -5.7288 -0.2022 22 7 2.2822 -6.7906 -1.8716 23 6 2.3094 -8.1087 -1.5014 24 1 2.7562 -8.3964 -0.5612 25 6 1.7627 -9.0750 -2.3345 26 7 1.2187 -8.7245 -3.4806 27 14 1.8004 -10.8732 -1.8298 28 1 1.0646 -11.0439 -0.5513 29 1 1.1568 -11.6970 -2.8846 30 1 3.2091 -11.3081 -1.6522 31 1 -0.3633 0.0022 1.0277 32 1 -0.3634 0.8889 -0.5157 33 1 -0.3634 -0.8911 -0.5119 34 1 5.2843 -1.5002 -1.0406 35 1 1.9826 -2.7845 -2.0003 36 1 -0.1893 -5.4880 -2.2603 37 1 0.6960 -4.1918 -3.1246 38 1 3.6185 -5.9575 -4.2117 39 1 2.6727 -4.4358 -4.1374 40 1 3.7518 -3.8610 -2.1700 41 1 4.6985 -5.3806 -2.2424 42 1 0.8363 -9.3997 -4.0627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095600334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:54 Heat of formation + Delta-G solvation = -18.294025 kcal Electronic energy + Delta-G solvation = -31081.963832 eV Core-core repulsion = 26510.028669 eV Total energy + Delta-G solvation = -4571.935163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.45124 -47.47168 -45.32158 -40.12657 -38.44743 -34.97138 -34.08719 -33.28573 -32.35740 -29.48521 -29.19000 -29.07071 -27.99715 -27.06087 -24.87759 -23.99353 -21.61766 -21.21129 -20.70437 -19.64172 -18.82455 -18.65420 -18.39973 -17.55170 -17.51128 -17.37429 -16.93515 -15.99051 -15.50914 -15.06581 -14.82579 -14.30019 -14.17845 -14.04564 -13.90556 -13.75653 -13.72393 -13.68044 -13.31557 -13.08252 -12.45514 -12.36240 -11.94576 -11.84849 -11.71899 -11.58521 -11.12375 -11.00729 -10.96191 -10.87041 -10.40345 -10.30336 -10.26123 -10.16344 -9.98142 -9.90418 -9.46974 -9.33572 -8.98541 -8.67443 -6.97723 -5.77418 -3.15707 0.64007 1.48280 1.96238 2.35525 3.09281 3.28270 3.38509 3.42682 3.43684 3.59457 3.74027 4.16477 4.28039 4.36688 4.43605 4.73018 4.77308 5.11392 5.12643 5.14286 5.26682 5.32243 5.46482 5.66075 5.71305 5.76567 5.87666 5.96603 6.01588 6.18355 6.23397 6.44175 6.48157 6.54057 6.72812 6.85658 6.90299 7.17962 7.46609 7.53229 7.69791 7.73499 8.10454 8.19495 9.05727 9.68453 10.47396 11.32129 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.003290 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.164048 B = 8509.569767 C = 9108.130014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.054 3.946 3 N -0.341 5.341 4 O 0.124 5.876 5 C -0.079 4.079 6 C 0.363 3.637 7 F -0.184 7.184 8 F -0.167 7.167 9 C -0.189 4.189 10 C 0.586 3.414 11 O -0.511 6.511 12 N -0.697 5.697 13 C 0.125 3.875 14 H 0.088 0.912 15 C -0.141 4.141 16 C 0.154 3.846 17 H 0.156 0.844 18 C -0.137 4.137 19 C -0.129 4.129 20 C 0.129 3.871 21 H 0.088 0.912 22 N -0.588 5.588 23 C -0.212 4.212 24 H 0.079 0.921 25 C -0.010 4.010 26 N -0.924 5.924 27 Si 0.917 3.083 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.397 0.603 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 18.334 0.940 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 N -0.043 5.043 4 O 0.057 5.943 5 C -0.144 4.144 6 C 0.308 3.692 7 F -0.165 7.165 8 F -0.147 7.147 9 C -0.197 4.197 10 C 0.368 3.632 11 O -0.386 6.386 12 N -0.348 5.348 13 C 0.020 3.980 14 H 0.106 0.894 15 C -0.181 4.181 16 C 0.047 3.953 17 H 0.172 0.828 18 C -0.177 4.177 19 C -0.169 4.169 20 C 0.020 3.980 21 H 0.106 0.894 22 N -0.308 5.308 23 C -0.340 4.340 24 H 0.097 0.903 25 C -0.205 4.205 26 N -0.572 5.572 27 Si 0.747 3.253 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.166 0.834 35 H 0.232 0.768 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.263 18.817 1.699 19.029 hybrid contribution 0.089 -1.284 0.078 1.289 sum 2.352 17.534 1.778 17.780 Atomic orbital electron populations 1.20291 0.84400 1.04569 1.04395 1.24871 0.98957 0.85860 1.01008 1.73619 0.88977 1.23109 1.18615 1.84596 1.21604 1.20813 1.67260 1.25156 0.97210 0.85746 1.06262 1.19586 0.79621 0.75114 0.94882 1.93079 1.64361 1.75045 1.83983 1.93191 1.95603 1.42497 1.83455 1.22319 0.91750 0.96593 1.08990 1.16805 0.78263 0.83143 0.85019 1.90871 1.49639 1.67141 1.30968 1.46231 1.69271 1.12159 1.07104 1.22815 0.98683 0.76711 0.99767 0.89435 1.23322 1.00243 0.99496 0.95066 1.23781 0.90374 0.90075 0.91039 0.82762 1.23050 1.00026 0.98573 0.96018 1.22898 0.99066 0.97783 0.97136 1.23189 0.92471 0.87205 0.95156 0.89430 1.46470 1.66087 1.00541 1.17749 1.19020 1.31935 0.80338 1.02716 0.90286 1.24684 1.01005 0.98097 0.96750 1.69412 1.44331 1.32023 1.11414 0.86107 0.77638 0.84146 0.77362 1.21169 1.21568 1.21208 0.89232 0.89565 0.89279 0.83381 0.76828 0.91416 0.92670 0.92504 0.93652 0.93595 0.92775 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.49 36.01 0.38 -0.28 16 2 C 0.05 0.61 7.59 -79.77 -0.61 0.01 16 3 N -0.34 -4.03 12.01 34.78 0.42 -3.61 16 4 O 0.12 1.40 11.06 18.67 0.21 1.60 16 5 C -0.08 -0.87 7.13 -34.63 -0.25 -1.11 16 6 C 0.36 3.43 5.81 36.01 0.21 3.64 16 7 F -0.18 -1.87 17.32 2.25 0.04 -1.83 16 8 F -0.17 -2.17 16.11 2.25 0.04 -2.14 16 9 C -0.19 -2.34 6.19 -102.89 -0.64 -2.98 16 10 C 0.59 8.62 6.59 -12.53 -0.08 8.54 16 11 O -0.51 -9.70 16.76 5.27 0.09 -9.61 16 12 N -0.70 -9.45 3.71 -52.48 -0.19 -9.65 16 13 C 0.13 2.17 3.15 -65.44 -0.21 1.97 16 14 H 0.09 1.72 7.57 -51.93 -0.39 1.33 16 15 C -0.14 -2.48 6.19 -24.24 -0.15 -2.63 16 16 C 0.15 3.26 4.72 -62.80 -0.30 2.96 16 17 H 0.16 3.79 5.52 -51.93 -0.29 3.50 16 18 C -0.14 -2.44 6.44 -24.24 -0.16 -2.60 16 19 C -0.13 -2.17 6.32 -24.23 -0.15 -2.33 16 20 C 0.13 2.54 5.35 -62.80 -0.34 2.21 16 21 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 22 N -0.59 -13.99 2.99 -145.82 -0.44 -14.42 16 23 C -0.21 -5.67 10.59 -15.06 -0.16 -5.83 16 24 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 25 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 26 N -0.92 -25.37 10.46 55.49 0.58 -24.79 16 27 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.15 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 4.35 7.89 -40.82 -0.32 4.03 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.05 0.79 7.40 -51.93 -0.38 0.41 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 40 H 0.05 0.62 6.38 -51.93 -0.33 0.29 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -31.32 357.21 -6.49 -37.81 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.05 Total: 3.55 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.54 Total: 1.20 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.37 Total: -52.47 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.29 Total: -8.01 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.08 Total: -3.97 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.32 -6.49 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095600334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.515 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds