Wall clock time and date at job start Sat Apr 11 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48498 * 109.46620 * 239.99674 * 3 2 1 5 5 H 1.48502 * 109.46843 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47078 * 119.99793 * 3 2 1 7 7 C 1.38814 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00274 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.47214 * 126.70263 * 359.95023 * 9 7 2 11 11 C 1.53779 * 106.38335 * 211.32052 * 10 9 7 12 12 H 1.09002 * 111.70890 * 219.70229 * 11 10 9 13 13 C 1.54325 * 109.79197 * 95.22289 * 11 10 9 14 14 C 1.54202 * 104.33997 * 222.84966 * 13 11 10 15 15 C 1.55055 * 102.51016 * 39.00132 * 14 13 11 16 16 C 1.54328 * 103.93251 * 320.56378 * 15 14 13 17 17 N 1.46501 * 111.68481 * 262.79179 * 16 15 14 18 18 C 1.34772 * 120.00230 * 298.88236 * 17 16 15 19 19 O 1.21683 * 120.00473 * 0.02562 * 18 17 16 20 20 C 1.46728 * 119.99779 * 180.02562 * 18 17 16 21 21 O 1.35342 * 126.64624 * 359.69154 * 20 18 17 22 22 C 1.33665 * 107.68331 * 179.83389 * 21 20 18 23 23 N 1.30615 * 109.15329 * 0.43370 * 22 21 20 24 24 C 1.33688 * 108.99642 * 359.73055 * 23 22 21 25 25 C 1.50707 * 126.27024 * 179.97438 * 24 23 22 26 26 F 1.39894 * 109.47375 * 30.04076 * 25 24 23 27 27 F 1.39905 * 109.47037 * 150.04014 * 25 24 23 28 28 C 1.47217 * 126.70352 * 180.02562 * 9 7 2 29 29 H 0.97000 * 119.99622 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.07659 * 92.09129 * 10 9 7 31 31 H 1.09002 * 110.07526 * 330.54972 * 10 9 7 32 32 H 1.08993 * 110.53716 * 340.30846 * 13 11 10 33 33 H 1.09000 * 110.53237 * 103.08367 * 13 11 10 34 34 H 1.08998 * 110.18469 * 280.90439 * 14 13 11 35 35 H 1.09001 * 111.27882 * 157.59950 * 14 13 11 36 36 H 1.08998 * 110.53604 * 201.94478 * 15 14 13 37 37 H 1.09007 * 110.53185 * 79.16757 * 15 14 13 38 38 H 0.97003 * 119.99754 * 118.88466 * 17 16 15 39 39 H 1.08002 * 125.42092 * 180.15795 * 22 21 20 40 40 H 1.09003 * 109.46937 * 270.03818 * 25 24 23 41 41 H 1.08994 * 110.07063 * 29.44773 * 28 9 7 42 42 H 1.09005 * 110.06643 * 267.90590 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1366 -2.5598 0.0010 11 6 -0.4200 -3.8624 0.7678 12 1 -1.2196 -4.4385 0.3022 13 6 -0.7333 -3.5418 2.2445 14 6 0.0417 -4.6115 3.0402 15 6 1.3661 -4.7294 2.2426 16 6 0.9213 -4.6367 0.7678 17 7 0.7836 -5.9624 0.1595 18 6 1.8526 -6.7786 0.0734 19 8 2.9321 -6.4148 0.5012 20 6 1.7147 -8.1061 -0.5363 21 8 0.5841 -8.6470 -1.0471 22 6 0.8880 -9.8652 -1.5057 23 7 2.1547 -10.1003 -1.2905 24 6 2.6995 -9.0359 -0.6928 25 6 4.1385 -8.8906 -0.2690 26 9 4.9546 -9.6367 -1.1259 27 9 4.5085 -7.5427 -0.3290 28 6 1.9077 -3.7402 0.0016 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5042 -2.6404 -1.0219 31 1 -0.6120 -1.7182 0.5048 32 1 -0.3587 -2.5530 2.5089 33 1 -1.8051 -3.6083 2.4311 34 1 -0.5033 -5.5554 3.0309 35 1 0.2311 -4.2841 4.0625 36 1 1.8459 -5.6885 2.4378 37 1 2.0371 -3.9073 2.4920 38 1 -0.0770 -6.2527 -0.1812 39 1 0.1954 -10.5481 -1.9749 40 1 4.2551 -9.2543 0.7519 41 1 2.8741 -3.7310 0.5056 42 1 2.0220 -4.0990 -1.0214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099030734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:02 Heat of formation + Delta-G solvation = -70.986329 kcal Electronic energy + Delta-G solvation = -31106.107373 eV Core-core repulsion = 26531.887301 eV Total energy + Delta-G solvation = -4574.220072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.96449 -46.95150 -43.89291 -40.30995 -38.24408 -35.66044 -34.49471 -33.57405 -31.65926 -31.33489 -29.49436 -28.10251 -26.91174 -24.72221 -24.71448 -23.90616 -22.39948 -21.29007 -20.60763 -19.93737 -19.03167 -18.50323 -17.86722 -17.39970 -17.08216 -16.92454 -16.83550 -15.85590 -15.80932 -15.00639 -14.75959 -14.49992 -14.42381 -14.04697 -13.70714 -13.56611 -13.52054 -13.30566 -13.16590 -12.92974 -12.62840 -12.01357 -11.92169 -11.54289 -11.39190 -11.21550 -11.08021 -10.93696 -10.75206 -10.65274 -10.36421 -10.31244 -10.18443 -10.04632 -9.99198 -9.83016 -9.61720 -9.54249 -8.89993 -8.66679 -6.89030 -5.66437 -3.10937 0.36651 1.89809 2.00493 2.92413 3.06761 3.12027 3.40825 3.44867 3.46325 3.76657 4.04042 4.33138 4.48955 4.69418 4.78081 4.92270 4.99456 5.06712 5.14894 5.28202 5.47074 5.52637 5.59502 5.78331 5.79631 5.94120 6.03560 6.07438 6.12712 6.27625 6.31575 6.49447 6.57774 6.71555 6.75368 6.89584 6.94865 7.02618 7.36920 7.49292 7.60268 7.80205 8.06607 8.37766 9.19184 9.79351 10.45738 11.34939 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.003363 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.421963 B = 8325.038828 C = 9106.416220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.916 3.084 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.139 3.861 11 C -0.112 4.112 12 H 0.069 0.931 13 C -0.109 4.109 14 C -0.124 4.124 15 C -0.111 4.111 16 C 0.155 3.845 17 N -0.691 5.691 18 C 0.591 3.409 19 O -0.480 6.480 20 C -0.047 4.047 21 O -0.182 6.182 22 C 0.202 3.798 23 N -0.468 5.468 24 C -0.020 4.020 25 C 0.355 3.645 26 F -0.192 7.192 27 F -0.159 7.159 28 C 0.140 3.860 29 H 0.253 0.747 30 H 0.004 0.996 31 H 0.131 0.869 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.401 0.599 39 H 0.263 0.737 40 H 0.129 0.871 41 H 0.055 0.945 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 -19.908 1.856 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.315 5.315 10 C 0.013 3.987 11 C -0.133 4.133 12 H 0.087 0.913 13 C -0.147 4.147 14 C -0.162 4.162 15 C -0.150 4.150 16 C 0.069 3.931 17 N -0.341 5.341 18 C 0.373 3.627 19 O -0.355 6.355 20 C -0.104 4.104 21 O -0.067 6.067 22 C -0.024 4.024 23 N -0.196 5.196 24 C -0.145 4.145 25 C 0.301 3.699 26 F -0.173 7.173 27 F -0.140 7.140 28 C 0.012 3.988 29 H 0.064 0.936 30 H 0.022 0.978 31 H 0.148 0.852 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.235 0.765 39 H 0.278 0.722 40 H 0.146 0.854 41 H 0.073 0.927 42 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -1.359 -19.853 1.974 19.997 hybrid contribution -0.486 0.884 -0.480 1.118 sum -1.845 -18.969 1.494 19.117 Atomic orbital electron populations 1.69567 1.04876 1.24829 1.57905 1.24749 0.95705 0.97649 1.02472 0.86120 0.78395 0.82848 0.77980 1.21220 1.21568 1.21093 1.19069 0.90541 0.82072 1.42772 0.90315 1.44428 1.01708 0.99493 1.85884 1.22038 0.85776 0.94548 0.96331 1.23046 0.93721 0.98875 0.97610 0.91250 1.22271 0.98854 0.99964 0.93564 1.22452 0.96391 0.98660 0.98698 1.22668 0.97288 1.02304 0.92706 1.21996 0.98042 0.79783 0.93307 1.45990 1.11170 1.16562 1.60352 1.16385 0.85525 0.80823 0.79981 1.91030 1.25180 1.72608 1.46687 1.23410 0.84450 0.97475 1.05104 1.84569 1.35409 1.29241 1.57529 1.28418 0.93255 0.83759 0.96986 1.70205 1.07477 1.26315 1.15558 1.22515 0.97926 0.91146 1.02879 1.19334 0.80800 0.75929 0.93880 1.93023 1.73933 1.76563 1.73773 1.93237 1.91517 1.32013 1.97238 1.21517 0.95063 0.85963 0.96209 0.93604 0.97758 0.85185 0.90182 0.92288 0.92694 0.91889 0.91730 0.89916 0.76457 0.72200 0.85352 0.92660 0.96775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.95 10.08 55.49 0.56 -25.40 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -5.96 10.34 -15.06 -0.16 -6.11 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.59 -14.87 3.39 -171.15 -0.58 -15.45 16 10 C 0.14 3.21 5.59 -3.25 -0.02 3.19 16 11 C -0.11 -1.98 3.65 -88.53 -0.32 -2.31 16 12 H 0.07 1.06 7.71 -51.93 -0.40 0.66 16 13 C -0.11 -1.78 6.21 -25.41 -0.16 -1.94 16 14 C -0.12 -1.80 6.88 -25.02 -0.17 -1.97 16 15 C -0.11 -1.85 5.52 -24.95 -0.14 -1.99 16 16 C 0.15 2.69 0.92 -129.74 -0.12 2.57 16 17 N -0.69 -9.99 5.21 -46.97 -0.24 -10.24 16 18 C 0.59 8.84 7.04 -12.83 -0.09 8.75 16 19 O -0.48 -8.40 11.11 5.20 0.06 -8.34 16 20 C -0.05 -0.59 7.15 -36.84 -0.26 -0.86 16 21 O -0.18 -1.79 10.57 4.43 0.05 -1.75 16 22 C 0.20 1.53 13.21 52.24 0.69 2.22 16 23 N -0.47 -5.22 11.21 -10.88 -0.12 -5.34 16 24 C -0.02 -0.25 6.78 -82.46 -0.56 -0.81 16 25 C 0.36 4.38 5.63 36.01 0.20 4.58 16 26 F -0.19 -2.54 17.29 2.25 0.04 -2.50 16 27 F -0.16 -2.48 13.49 2.25 0.03 -2.45 16 28 C 0.14 3.06 5.30 -3.26 -0.02 3.04 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.13 3.36 4.93 -51.93 -0.26 3.10 16 32 H 0.08 1.56 7.61 -51.93 -0.40 1.16 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.04 6.65 -51.93 -0.35 0.69 16 37 H 0.08 1.55 7.56 -51.92 -0.39 1.16 16 38 H 0.40 4.81 8.09 -40.82 -0.33 4.48 16 39 H 0.26 0.44 8.06 -52.49 -0.42 0.01 16 40 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.26 7.55 -51.93 -0.39 0.87 16 42 H 0.01 0.33 8.08 -51.93 -0.42 -0.09 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -32.50 346.01 -6.25 -38.75 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.01 Total: 2.70 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.22 Total: 7.99 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.39 Total: -56.43 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.10 Total: -10.09 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.07 Total: -4.95 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.50 -6.25 -38.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099030734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.232 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds