Wall clock time and date at job start Sat Apr 11 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30216 * 126.79089 * 2 1 4 4 O 1.20914 * 111.64447 * 180.29075 * 3 2 1 5 5 C 1.34067 * 111.55575 * 359.69882 * 4 3 2 6 6 Cl 1.73595 * 126.79960 * 180.02562 * 5 4 3 7 7 C 1.35678 * 106.40307 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.01244 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47090 * 90.02459 * 8 7 5 10 10 C 1.50697 * 109.47431 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99626 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00066 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00059 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47425 * 180.02562 * 13 12 10 15 15 C 1.53781 * 113.61609 * 175.00005 * 14 13 12 16 16 C 1.53781 * 87.08070 * 139.98229 * 15 14 13 17 17 N 1.46497 * 113.61305 * 219.93536 * 16 15 14 18 18 C 1.36944 * 119.99791 * 203.46713 * 17 16 15 19 19 H 1.07993 * 120.00042 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99770 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00274 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99962 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46991 * 60.00036 * 22 20 18 24 24 H 1.48495 * 109.47111 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47014 * 300.00285 * 22 20 18 26 26 C 1.53786 * 87.17350 * 334.52830 * 16 15 14 27 27 H 1.08998 * 109.47270 * 270.20440 * 1 2 3 28 28 H 1.09008 * 109.47013 * 30.19722 * 1 2 3 29 29 H 1.08999 * 109.46998 * 150.19837 * 1 2 3 30 30 H 1.09005 * 109.47291 * 330.03031 * 8 7 5 31 31 H 1.08995 * 109.47109 * 210.02205 * 8 7 5 32 32 H 1.09005 * 109.47358 * 59.99628 * 9 8 7 33 33 H 1.09006 * 109.47182 * 300.00313 * 9 8 7 34 34 H 0.96996 * 120.00586 * 0.02562 * 12 10 9 35 35 H 1.08997 * 109.47114 * 60.00231 * 13 12 10 36 36 H 1.09006 * 109.47306 * 300.00712 * 13 12 10 37 37 H 1.08996 * 112.84723 * 43.80825 * 14 13 12 38 38 H 1.08999 * 113.61181 * 25.43284 * 15 14 13 39 39 H 1.08998 * 113.61680 * 254.52836 * 15 14 13 40 40 H 1.09002 * 113.61445 * 89.11830 * 16 15 14 41 41 H 0.96995 * 120.00146 * 23.47603 * 17 16 15 42 42 H 0.96996 * 120.00281 * 179.97438 * 21 20 18 43 43 H 1.08992 * 113.61675 * 140.02412 * 26 16 15 44 44 H 1.09000 * 113.60973 * 270.92699 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0428 0.0000 4 8 3.4540 0.7269 -0.0057 5 6 3.6037 -0.6054 -0.0038 6 17 5.1011 -1.4836 -0.0095 7 6 2.3530 -1.1315 0.0035 8 6 1.9580 -2.5857 0.0078 9 6 1.8311 -3.0754 1.4518 10 6 1.4354 -4.5295 1.4562 11 8 1.2715 -5.1165 0.4076 12 7 1.2647 -5.1779 2.6253 13 6 0.8806 -6.5916 2.6296 14 6 0.7536 -7.0813 4.0736 15 6 0.2348 -8.5242 4.1914 16 6 1.2561 -8.7154 5.3250 17 7 1.9216 -10.0203 5.3014 18 6 2.4656 -10.5323 6.4492 19 1 2.4037 -9.9743 7.3717 20 6 3.0957 -11.7690 6.4269 21 7 3.1706 -12.4493 5.3027 22 14 3.8372 -12.4677 7.9926 23 1 2.7733 -12.6254 9.0166 24 1 4.4471 -13.7905 7.7040 25 1 4.8811 -11.5423 8.5018 26 6 2.0784 -7.5926 4.6707 27 1 -0.3634 0.0037 1.0276 28 1 -0.3633 0.8883 -0.5169 29 1 -0.3633 -0.8918 -0.5107 30 1 2.7192 -3.1706 -0.5086 31 1 1.0014 -2.7039 -0.5012 32 1 1.0700 -2.4906 1.9683 33 1 2.7877 -2.9572 1.9609 34 1 1.3962 -4.7086 3.4639 35 1 1.6415 -7.1765 2.1129 36 1 -0.0761 -6.7098 2.1207 37 1 0.2278 -6.3745 4.7154 38 1 0.4392 -9.1348 3.3119 39 1 -0.8018 -8.5899 4.5220 40 1 0.8687 -8.4556 6.3102 41 1 1.9769 -10.5216 4.4729 42 1 3.6112 -13.3133 5.2870 43 1 2.5292 -6.9067 5.3879 44 1 2.7859 -7.9491 3.9221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101059907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:05 Heat of formation + Delta-G solvation = 38.646426 kcal Electronic energy + Delta-G solvation = -25923.860570 eV Core-core repulsion = 21906.191211 eV Total energy + Delta-G solvation = -4017.669359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.54071 -39.96708 -38.52613 -37.69984 -36.30808 -34.73857 -33.60365 -33.29338 -31.19171 -30.24351 -29.26311 -27.70542 -25.39073 -25.10949 -23.77701 -22.08267 -21.80563 -21.07203 -20.47503 -19.07858 -18.35091 -18.18021 -17.24535 -16.99255 -16.27218 -16.10715 -15.56928 -14.99745 -14.77567 -14.43415 -14.09848 -13.90890 -13.71733 -13.58921 -13.37344 -13.15220 -13.08890 -12.96068 -12.88951 -12.64211 -12.27380 -11.93949 -11.84720 -11.66256 -11.40142 -11.25991 -11.24383 -10.84261 -10.56718 -10.46531 -10.30056 -10.19241 -9.95006 -9.84712 -9.65932 -9.49303 -9.07925 -8.88351 -6.98415 -5.79959 -3.09037 0.60734 0.70877 1.54660 2.50835 3.00303 3.18220 3.41657 3.46162 3.47352 3.53735 4.04360 4.29329 4.38832 4.56517 4.58082 4.78381 4.82132 4.93209 4.96443 4.99891 5.09205 5.14538 5.19898 5.22192 5.44390 5.47176 5.48437 5.55547 5.73051 5.78956 5.81837 5.90307 6.06831 6.22063 6.27980 6.33041 6.41606 6.56338 6.79609 7.08664 7.39265 7.57078 7.66639 8.10160 8.38577 9.49492 10.07728 10.41812 11.42272 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.001721 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.456522 B =16270.076775 C =17104.605643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.034 3.966 3 N -0.348 5.348 4 O 0.110 5.890 5 C 0.001 3.999 6 Cl 0.053 6.947 7 C -0.166 4.166 8 C -0.029 4.029 9 C -0.137 4.137 10 C 0.511 3.489 11 O -0.542 6.542 12 N -0.725 5.725 13 C 0.131 3.869 14 C -0.127 4.127 15 C -0.142 4.142 16 C 0.165 3.835 17 N -0.713 5.713 18 C -0.245 4.245 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.161 4.161 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.401 0.599 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.053 0.947 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 27.306 -10.949 29.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 N -0.053 5.053 4 O 0.043 5.957 5 C -0.089 4.089 6 Cl 0.081 6.919 7 C -0.170 4.170 8 C -0.068 4.068 9 C -0.177 4.177 10 C 0.297 3.703 11 O -0.420 6.420 12 N -0.376 5.376 13 C 0.008 3.992 14 C -0.147 4.147 15 C -0.181 4.181 16 C 0.053 3.947 17 N -0.351 5.351 18 C -0.376 4.376 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.202 4.202 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.234 0.766 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.267 27.996 -11.517 30.572 hybrid contribution 0.843 -1.127 1.016 1.736 sum -3.425 26.870 -10.500 29.051 Atomic orbital electron populations 1.20262 0.85066 1.04383 1.03952 1.23380 0.99228 0.87809 1.02056 1.73966 0.88556 1.22996 1.19829 1.84925 1.22093 1.20763 1.67950 1.24670 0.91264 0.84919 1.08095 1.98481 1.28011 1.68737 1.96634 1.20888 0.89793 0.98358 1.08006 1.19704 1.04270 0.86510 0.96272 1.21633 1.04140 0.93417 0.98525 1.20507 0.77108 0.88821 0.83901 1.90725 1.50919 1.68926 1.31422 1.46074 1.70443 1.12661 1.08392 1.21448 1.00400 0.80070 0.97260 1.22688 1.00287 0.97314 0.94374 1.23424 0.99620 0.94000 1.01102 1.21519 0.91319 0.86544 0.95286 1.42405 1.65455 1.17115 1.10124 1.19250 1.28954 1.00507 0.88917 0.91164 1.24778 1.01581 0.97485 0.97090 1.69649 1.48671 1.14678 1.24995 0.86262 0.78993 0.78201 0.82676 1.21237 1.21676 1.21253 1.23995 0.95612 1.00160 1.00416 0.89607 0.90096 0.89392 0.89044 0.88876 0.88626 0.88608 0.76553 0.91187 0.91753 0.89405 0.90090 0.91995 0.90786 0.78063 0.93384 0.92794 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.39 36.01 0.37 -0.01 16 2 C 0.03 0.27 7.32 -82.12 -0.60 -0.34 16 3 N -0.35 -3.37 12.07 33.43 0.40 -2.97 16 4 O 0.11 1.03 11.20 17.11 0.19 1.22 16 5 C 0.00 0.00 8.12 29.82 0.24 0.25 16 6 Cl 0.05 0.38 29.23 -51.86 -1.52 -1.13 16 7 C -0.17 -1.28 5.58 -104.38 -0.58 -1.86 16 8 C -0.03 -0.22 4.90 -27.88 -0.14 -0.36 16 9 C -0.14 -0.94 5.68 -27.88 -0.16 -1.10 16 10 C 0.51 5.35 7.83 -10.99 -0.09 5.27 16 11 O -0.54 -7.87 15.98 5.56 0.09 -7.78 16 12 N -0.72 -7.09 5.56 -60.29 -0.33 -7.43 16 13 C 0.13 1.59 5.51 -4.04 -0.02 1.57 16 14 C -0.13 -1.59 3.76 -89.67 -0.34 -1.93 16 15 C -0.14 -2.16 7.39 -25.92 -0.19 -2.36 16 16 C 0.17 3.11 4.47 -67.12 -0.30 2.81 16 17 N -0.71 -17.52 5.41 -52.64 -0.28 -17.81 16 18 C -0.25 -6.70 9.97 -15.06 -0.15 -6.85 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 22 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C -0.16 -2.55 7.45 -25.77 -0.19 -2.74 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.09 0.34 7.65 -51.93 -0.40 -0.06 16 30 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 31 H 0.09 0.68 7.60 -51.93 -0.39 0.28 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.40 2.91 8.47 -40.82 -0.35 2.57 16 35 H 0.07 0.99 7.85 -51.93 -0.41 0.59 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 41 H 0.39 10.11 7.91 -40.82 -0.32 9.78 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 LS Contribution 390.19 15.07 5.88 5.88 Total: -1.00 -32.66 390.19 -8.58 -41.23 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.47 Total: 7.02 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.24 Total: -8.12 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.51 Total: -55.43 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: 0.28 Total: -6.56 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -1.52 Total: -1.13 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.66 -8.58 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101059907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.879 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds