Wall clock time and date at job start Sat Apr 11 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30216 * 126.79089 * 2 1 4 4 O 1.20914 * 111.64447 * 180.29075 * 3 2 1 5 5 C 1.34067 * 111.55575 * 359.69882 * 4 3 2 6 6 Cl 1.73595 * 126.79960 * 180.02562 * 5 4 3 7 7 C 1.35678 * 106.40307 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.01244 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47090 * 90.02459 * 8 7 5 10 10 C 1.50697 * 109.47431 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99626 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00066 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00059 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47425 * 180.02562 * 13 12 10 15 15 C 1.53781 * 113.61609 * 175.00005 * 14 13 12 16 16 C 1.53781 * 87.08070 * 139.98229 * 15 14 13 17 17 N 1.46497 * 113.61305 * 219.93536 * 16 15 14 18 18 C 1.36944 * 119.99791 * 203.46713 * 17 16 15 19 19 H 1.07993 * 120.00042 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99770 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00274 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99962 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46991 * 60.00036 * 22 20 18 24 24 H 1.48495 * 109.47111 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47014 * 300.00285 * 22 20 18 26 26 C 1.53786 * 87.17350 * 334.52830 * 16 15 14 27 27 H 1.08998 * 109.47270 * 270.20440 * 1 2 3 28 28 H 1.09008 * 109.47013 * 30.19722 * 1 2 3 29 29 H 1.08999 * 109.46998 * 150.19837 * 1 2 3 30 30 H 1.09005 * 109.47291 * 330.03031 * 8 7 5 31 31 H 1.08995 * 109.47109 * 210.02205 * 8 7 5 32 32 H 1.09005 * 109.47358 * 59.99628 * 9 8 7 33 33 H 1.09006 * 109.47182 * 300.00313 * 9 8 7 34 34 H 0.96996 * 120.00586 * 0.02562 * 12 10 9 35 35 H 1.08997 * 109.47114 * 60.00231 * 13 12 10 36 36 H 1.09006 * 109.47306 * 300.00712 * 13 12 10 37 37 H 1.08996 * 112.84723 * 43.80825 * 14 13 12 38 38 H 1.08999 * 113.61181 * 25.43284 * 15 14 13 39 39 H 1.08998 * 113.61680 * 254.52836 * 15 14 13 40 40 H 1.09002 * 113.61445 * 89.11830 * 16 15 14 41 41 H 0.96995 * 120.00146 * 23.47603 * 17 16 15 42 42 H 0.96996 * 120.00281 * 179.97438 * 21 20 18 43 43 H 1.08992 * 113.61675 * 140.02412 * 26 16 15 44 44 H 1.09000 * 113.60973 * 270.92699 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0428 0.0000 4 8 3.4540 0.7269 -0.0057 5 6 3.6037 -0.6054 -0.0038 6 17 5.1011 -1.4836 -0.0095 7 6 2.3530 -1.1315 0.0035 8 6 1.9580 -2.5857 0.0078 9 6 1.8311 -3.0754 1.4518 10 6 1.4354 -4.5295 1.4562 11 8 1.2715 -5.1165 0.4076 12 7 1.2647 -5.1779 2.6253 13 6 0.8806 -6.5916 2.6296 14 6 0.7536 -7.0813 4.0736 15 6 0.2348 -8.5242 4.1914 16 6 1.2561 -8.7154 5.3250 17 7 1.9216 -10.0203 5.3014 18 6 2.4656 -10.5323 6.4492 19 1 2.4037 -9.9743 7.3717 20 6 3.0957 -11.7690 6.4269 21 7 3.1706 -12.4493 5.3027 22 14 3.8372 -12.4677 7.9926 23 1 2.7733 -12.6254 9.0166 24 1 4.4471 -13.7905 7.7040 25 1 4.8811 -11.5423 8.5018 26 6 2.0784 -7.5926 4.6707 27 1 -0.3634 0.0037 1.0276 28 1 -0.3633 0.8883 -0.5169 29 1 -0.3633 -0.8918 -0.5107 30 1 2.7192 -3.1706 -0.5086 31 1 1.0014 -2.7039 -0.5012 32 1 1.0700 -2.4906 1.9683 33 1 2.7877 -2.9572 1.9609 34 1 1.3962 -4.7086 3.4639 35 1 1.6415 -7.1765 2.1129 36 1 -0.0761 -6.7098 2.1207 37 1 0.2278 -6.3745 4.7154 38 1 0.4392 -9.1348 3.3119 39 1 -0.8018 -8.5899 4.5220 40 1 0.8687 -8.4556 6.3102 41 1 1.9769 -10.5216 4.4729 42 1 3.6112 -13.3133 5.2870 43 1 2.5292 -6.9067 5.3879 44 1 2.7859 -7.9491 3.9221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101059907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:04 Heat of formation + Delta-G solvation = 17.623088 kcal Electronic energy + Delta-G solvation = -25924.772210 eV Core-core repulsion = 21906.191211 eV Total energy + Delta-G solvation = -4018.581000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.15934 -40.88743 -39.77423 -38.29864 -36.92491 -35.99758 -34.95874 -34.19697 -32.26332 -31.67742 -29.72911 -28.82620 -26.43537 -26.37076 -25.44032 -22.75610 -22.50623 -22.24236 -21.36551 -20.39453 -19.07437 -18.96096 -18.78598 -17.96906 -17.19657 -16.90228 -16.56425 -16.30959 -16.04567 -15.53518 -15.25323 -14.94441 -14.79120 -14.38855 -14.26200 -13.94131 -13.85694 -13.64898 -13.54027 -13.37421 -13.23073 -13.21044 -12.98555 -12.88207 -12.85624 -12.59495 -12.24452 -12.21396 -12.06892 -11.82297 -11.56554 -11.53443 -11.09206 -11.02794 -10.84390 -10.74983 -10.28234 -10.00280 -8.96149 -7.93440 -5.21662 0.00593 0.08459 0.97202 1.47759 1.50663 1.56778 1.70196 2.24475 2.53280 2.57746 3.00249 3.38271 3.46407 3.68430 3.73043 3.78417 3.79577 3.94611 4.02969 4.25204 4.28622 4.29617 4.38344 4.46183 4.55947 4.60582 4.67992 4.70359 4.78256 4.83505 4.99828 5.00560 5.01683 5.04247 5.09610 5.24326 5.25922 5.40392 5.48245 5.55968 5.76713 6.28833 6.63477 6.95981 7.32674 7.34224 8.13379 8.34581 9.29800 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.001721 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.456522 B =16270.076775 C =17104.605643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.038 3.962 3 N -0.373 5.373 4 O 0.095 5.905 5 C -0.003 4.003 6 Cl 0.058 6.942 7 C -0.163 4.163 8 C -0.026 4.026 9 C -0.127 4.127 10 C 0.510 3.490 11 O -0.587 6.587 12 N -0.715 5.715 13 C 0.138 3.862 14 C -0.094 4.094 15 C -0.137 4.137 16 C 0.141 3.859 17 N -0.731 5.731 18 C -0.242 4.242 19 H 0.079 0.921 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.973 3.027 23 H -0.276 1.276 24 H -0.298 1.298 25 H -0.278 1.278 26 C -0.153 4.153 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.416 0.584 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.067 0.933 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 29.388 -9.654 31.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 N -0.082 5.082 4 O 0.030 5.970 5 C -0.093 4.093 6 Cl 0.086 6.914 7 C -0.168 4.168 8 C -0.064 4.064 9 C -0.167 4.167 10 C 0.298 3.702 11 O -0.467 6.467 12 N -0.367 5.367 13 C 0.014 3.986 14 C -0.113 4.113 15 C -0.176 4.176 16 C 0.032 3.968 17 N -0.368 5.368 18 C -0.374 4.374 19 H 0.097 0.903 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.802 3.198 23 H -0.203 1.203 24 H -0.225 1.225 25 H -0.204 1.204 26 C -0.194 4.194 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.127 0.873 34 H 0.253 0.747 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.141 0.859 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.418 30.158 -10.178 32.287 hybrid contribution 1.156 -1.716 0.587 2.150 sum -4.262 28.443 -9.591 30.317 Atomic orbital electron populations 1.20441 0.83010 1.05166 1.05236 1.23875 1.00474 0.87231 1.00459 1.73973 0.88835 1.23985 1.21365 1.84898 1.22247 1.21236 1.68580 1.24840 0.91762 0.84786 1.07950 1.98483 1.27811 1.68498 1.96594 1.20911 0.89555 0.98386 1.07928 1.19647 1.03996 0.86040 0.96707 1.21622 1.05624 0.90899 0.98520 1.21097 0.75970 0.90003 0.83149 1.90715 1.52872 1.70147 1.33008 1.45944 1.69922 1.11625 1.09232 1.21187 0.99687 0.81244 0.96513 1.22510 0.97512 0.96305 0.94926 1.23310 0.99633 0.95741 0.98961 1.21983 0.92984 0.84865 0.96985 1.42636 1.66275 1.19138 1.08780 1.19692 1.27430 1.00298 0.89980 0.90309 1.25608 1.03229 0.98375 1.00086 1.69818 1.50464 1.14882 1.27113 0.85209 0.78340 0.76985 0.79219 1.20253 1.22494 1.20383 1.23763 0.96508 0.99188 0.99938 0.87945 0.89785 0.88160 0.90346 0.88588 0.85721 0.87328 0.74662 0.93821 0.91612 0.85903 0.91599 0.90299 0.90250 0.79694 0.94148 0.91383 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.39 71.24 0.74 0.15 16 2 C 0.04 0.53 7.32 43.55 0.32 0.85 16 3 N -0.37 -6.88 12.07 -49.44 -0.60 -7.47 16 4 O 0.09 1.73 11.20 71.39 0.80 2.53 16 5 C 0.00 -0.05 8.12 67.23 0.55 0.49 16 6 Cl 0.06 0.80 29.23 -2.72 -0.08 0.72 16 7 C -0.16 -2.25 5.58 -19.71 -0.11 -2.36 16 8 C -0.03 -0.34 4.90 29.85 0.15 -0.19 16 9 C -0.13 -1.38 5.68 29.85 0.17 -1.21 16 10 C 0.51 9.61 7.83 87.66 0.69 10.30 16 11 O -0.59 -16.53 15.98 -3.04 -0.05 -16.58 16 12 N -0.72 -12.00 5.56 -463.06 -2.57 -14.58 16 13 C 0.14 3.09 5.51 86.38 0.48 3.56 16 14 C -0.09 -2.07 3.76 -10.18 -0.04 -2.11 16 15 C -0.14 -3.98 7.39 31.12 0.23 -3.75 16 16 C 0.14 5.15 4.47 45.52 0.20 5.35 16 17 N -0.73 -36.30 5.41 -320.44 -1.73 -38.03 16 18 C -0.24 -13.26 9.97 84.03 0.84 -12.42 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 20 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 21 N -0.97 -59.82 13.06 21.65 0.28 -59.54 16 22 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 C -0.15 -4.62 7.45 31.21 0.23 -4.39 16 27 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.10 0.49 7.65 -2.39 -0.02 0.47 16 30 H 0.08 1.26 8.10 -2.38 -0.02 1.24 16 31 H 0.10 1.22 7.60 -2.39 -0.02 1.20 16 32 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.42 4.38 8.47 -92.71 -0.79 3.59 16 35 H 0.04 1.23 7.85 -2.39 -0.02 1.21 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 2.80 8.11 -2.39 -0.02 2.78 16 41 H 0.37 20.13 7.91 -92.71 -0.73 19.39 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.21 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.92 7.90 -2.39 -0.02 1.90 16 Total: -1.00 -72.61 390.19 2.51 -70.10 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.48 Total: 24.89 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 4.91 Total: -9.90 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -4.62 Total: -119.62 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.75 Total: -14.05 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 17 Polarization: 0.80 SS G_CDS: -0.08 Total: 0.72 kcal Total: -72.61 2.51 -70.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101059907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.722 kcal (2) G-P(sol) polarization free energy of solvation -72.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds