Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86804 * 119.99757 * 2 1 4 4 H 1.48501 * 109.46963 * 240.00102 * 3 2 1 5 5 H 1.48500 * 109.47145 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46804 * 120.00193 * 3 2 1 7 7 C 1.38802 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00142 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99641 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99817 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47284 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99887 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00040 * 180.02562 * 11 10 9 14 14 C 1.47066 * 136.05579 * 180.02562 * 13 11 10 15 15 C 1.53504 * 88.04678 * 207.05024 * 14 13 11 16 16 N 1.46499 * 114.20382 * 220.37387 * 15 14 13 17 17 C 1.35316 * 125.86841 * 84.71602 * 16 15 14 18 18 C 1.35353 * 106.17181 * 179.90219 * 17 16 15 19 19 C 1.50700 * 126.74884 * 180.12613 * 18 17 16 20 20 N 1.46903 * 109.46896 * 95.29508 * 19 18 17 21 21 C 1.46902 * 110.99699 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.47255 * 180.02562 * 21 20 19 23 23 O 1.42905 * 109.47070 * 64.99657 * 22 21 20 24 24 N 1.33768 * 106.49641 * 0.35251 * 18 17 16 25 25 N 1.28630 * 108.88712 * 359.77204 * 24 18 17 26 26 C 1.47064 * 136.05760 * 359.93929 * 13 11 10 27 27 H 0.96998 * 120.00049 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47345 * 59.99840 * 10 9 7 29 29 H 1.09004 * 109.47145 * 299.99864 * 10 9 7 30 30 H 1.09002 * 113.46793 * 321.85996 * 14 13 11 31 31 H 1.08999 * 113.46805 * 92.24363 * 14 13 11 32 32 H 1.09002 * 114.20460 * 87.54848 * 15 14 13 33 33 H 1.07997 * 126.91482 * 0.02562 * 17 16 15 34 34 H 1.08994 * 109.47050 * 215.29386 * 19 18 17 35 35 H 1.09006 * 109.47066 * 335.30102 * 19 18 17 36 36 H 1.00901 * 111.00158 * 56.05024 * 20 19 18 37 37 H 1.08999 * 109.47478 * 299.99963 * 21 20 19 38 38 H 1.09004 * 109.47234 * 60.00140 * 21 20 19 39 39 H 1.08995 * 109.47332 * 185.00111 * 22 21 20 40 40 H 1.09004 * 109.46813 * 305.00305 * 22 21 20 41 41 H 0.96699 * 113.99670 * 180.02562 * 23 22 21 42 42 H 1.08999 * 113.47096 * 267.69948 * 26 13 11 43 43 H 1.09005 * 113.46966 * 38.08340 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.7296 -7.8093 -0.0016 15 6 4.0952 -7.8640 0.6975 16 7 4.9742 -8.9324 0.2158 17 6 5.7903 -8.8625 -0.8612 18 6 6.4149 -10.0607 -0.9393 19 6 7.4296 -10.4831 -1.9703 20 7 8.7833 -10.2582 -1.4459 21 6 9.8011 -10.6589 -2.4265 22 6 11.1946 -10.4111 -1.8455 23 8 11.3993 -11.2647 -0.7178 24 7 5.9506 -10.7979 0.0757 25 7 5.0988 -10.1007 0.7412 26 6 4.3052 -6.5117 -0.0008 27 1 -0.4850 0.8400 0.0004 28 1 3.1245 -3.7313 0.8894 29 1 3.1245 -3.7313 -0.8906 30 1 1.9112 -8.1810 0.6149 31 1 2.7359 -8.2446 -1.0008 32 1 4.0435 -7.8026 1.7846 33 1 5.9190 -8.0195 -1.5239 34 1 7.2988 -11.5412 -2.1966 35 1 7.2900 -9.8971 -2.8788 36 1 8.9161 -10.7397 -0.5691 37 1 9.6869 -11.7182 -2.6564 38 1 9.6777 -10.0739 -3.3379 39 1 11.9477 -10.6243 -2.6040 40 1 11.2781 -9.3701 -1.5330 41 1 12.2641 -11.1610 -0.2979 42 1 4.7318 -6.6019 -0.9998 43 1 4.8268 -5.7794 0.6155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105169150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = 65.884418 kcal Electronic energy + Delta-G solvation = -25694.517016 eV Core-core repulsion = 21712.365242 eV Total energy + Delta-G solvation = -3982.151774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.63666 -40.58407 -38.04612 -37.87284 -36.02833 -33.90263 -32.51010 -32.03511 -30.59446 -29.26989 -28.20121 -26.58211 -25.60178 -25.42710 -24.13577 -22.29000 -21.73213 -21.16119 -19.35001 -18.21431 -18.03477 -17.74808 -16.93176 -16.71872 -16.28121 -15.84231 -15.55501 -15.41750 -15.18383 -14.87561 -14.62788 -14.41677 -14.01072 -13.93636 -13.51746 -13.27420 -13.20903 -13.02491 -12.83121 -12.64597 -12.43986 -12.06260 -11.87361 -11.63160 -11.62695 -11.13686 -11.10976 -11.09808 -10.84820 -10.52818 -10.33773 -9.92882 -9.71611 -9.56879 -9.14142 -9.01359 -8.85976 -8.36648 -6.61458 -6.29469 -4.01940 1.25880 1.74073 2.17384 2.51575 2.85107 3.16486 3.18184 3.23744 3.34174 3.40063 3.78358 3.80768 3.94981 4.11441 4.15517 4.25146 4.47086 4.53453 4.62105 4.69728 4.82381 4.87254 4.90192 4.93615 5.05852 5.08177 5.14766 5.21816 5.26410 5.31124 5.36530 5.38333 5.56141 5.65382 5.71583 5.78388 5.97740 6.24859 6.49109 6.95273 7.14164 7.44838 7.51438 8.22669 8.24146 8.26845 9.15630 10.77843 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.001826 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.873140 B =15328.071509 C =16838.150189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.146 4.146 11 C 0.570 3.430 12 O -0.501 6.501 13 N -0.649 5.649 14 C 0.103 3.897 15 C 0.102 3.898 16 N -0.279 5.279 17 C -0.027 4.027 18 C -0.022 4.022 19 C 0.146 3.854 20 N -0.684 5.684 21 C 0.059 3.941 22 C 0.075 3.925 23 O -0.576 6.576 24 N -0.264 5.264 25 N -0.077 5.077 26 C 0.101 3.899 27 H 0.270 0.730 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.153 0.847 33 H 0.192 0.808 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.355 0.645 37 H 0.039 0.961 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.381 0.619 42 H 0.096 0.904 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.395 -20.160 -4.442 29.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.296 4.296 11 C 0.360 3.640 12 O -0.373 6.373 13 N -0.389 5.389 14 C -0.022 4.022 15 C -0.001 4.001 16 N -0.073 5.073 17 C -0.179 4.179 18 C -0.160 4.160 19 C 0.016 3.984 20 N -0.318 5.318 21 C -0.071 4.071 22 C -0.003 4.003 23 O -0.382 6.382 24 N -0.131 5.131 25 N -0.056 5.056 26 C -0.024 4.024 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.170 0.830 33 H 0.209 0.791 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.174 0.826 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.228 0.772 42 H 0.114 0.886 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.167 -20.585 -3.638 27.695 hybrid contribution 2.786 1.377 -0.707 3.187 sum 20.953 -19.207 -4.345 28.755 Atomic orbital electron populations 1.69999 1.05972 1.27731 1.46439 1.24999 0.95047 0.99075 0.94378 0.86206 0.79243 0.81117 0.78840 1.19888 1.20750 1.19882 1.22796 0.94864 0.91440 1.59517 0.90868 1.85460 1.04436 0.96392 1.96768 1.23502 1.06905 0.94045 1.05169 1.20020 0.85093 0.84579 0.74354 1.90755 1.14545 1.84515 1.47454 1.49364 1.07025 1.05727 1.76775 1.23243 0.95841 0.82011 1.01114 1.23758 0.90099 0.84280 1.01999 1.47185 1.28917 1.11813 1.19350 1.23350 0.97651 1.02020 0.94844 1.21731 1.02556 0.92125 0.99568 1.20054 0.85116 0.99780 0.93488 1.60521 1.00976 1.63165 1.07100 1.22003 0.90264 0.99354 0.95452 1.22250 0.96009 0.94003 0.88057 1.86455 1.40588 1.64476 1.46679 1.75072 1.07356 1.25327 1.05361 1.78355 1.16263 0.90377 1.20622 1.23309 0.84053 0.93642 1.01378 0.92008 0.88936 0.89003 0.88440 0.89158 0.82966 0.79128 0.93193 0.89175 0.82556 0.94289 0.89462 0.93154 0.92531 0.77164 0.88583 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.80 9.50 30.94 0.29 -14.50 16 8 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 9 S -0.06 -1.49 20.57 -107.50 -2.21 -3.71 16 10 C -0.15 -2.76 5.98 36.01 0.22 -2.54 16 11 C 0.57 10.06 8.10 -10.98 -0.09 9.97 16 12 O -0.50 -11.01 16.64 5.56 0.09 -10.92 16 13 N -0.65 -7.91 3.69 -185.01 -0.68 -8.59 16 14 C 0.10 0.99 8.42 -8.50 -0.07 0.92 16 15 C 0.10 0.79 5.34 -67.69 -0.36 0.43 16 16 N -0.28 -2.56 3.56 -54.46 -0.19 -2.76 16 17 C -0.03 -0.22 10.72 -17.04 -0.18 -0.40 16 18 C -0.02 -0.20 6.76 -82.78 -0.56 -0.76 16 19 C 0.15 1.04 6.25 -4.97 -0.03 1.01 16 20 N -0.68 -5.12 6.49 -115.05 -0.75 -5.87 16 21 C 0.06 0.33 6.11 -3.82 -0.02 0.31 16 22 C 0.07 0.38 7.39 37.16 0.27 0.65 16 23 O -0.58 -3.65 13.18 -35.23 -0.46 -4.11 16 24 N -0.26 -3.25 12.41 33.29 0.41 -2.83 16 25 N -0.08 -0.94 13.16 60.35 0.79 -0.14 16 26 C 0.10 0.77 7.77 -8.43 -0.07 0.71 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 29 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.15 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.19 0.89 6.78 -52.49 -0.36 0.54 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.36 3.26 8.28 -39.29 -0.33 2.93 16 37 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.38 0.83 9.12 45.56 0.42 1.24 16 42 H 0.10 0.54 6.38 -51.93 -0.33 0.21 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -37.12 385.99 -7.38 -44.50 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.21 Total: -0.14 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -0.70 Total: -2.24 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.32 Total: -44.97 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.37 Total: -15.03 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.12 -7.38 -44.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105169150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.385 kcal (2) G-P(sol) polarization free energy of solvation -37.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds