Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86804 * 119.99757 * 2 1 4 4 H 1.48501 * 109.46963 * 240.00102 * 3 2 1 5 5 H 1.48500 * 109.47145 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46804 * 120.00193 * 3 2 1 7 7 C 1.38802 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00142 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99641 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99817 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47284 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99887 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00040 * 180.02562 * 11 10 9 14 14 C 1.47066 * 136.05579 * 180.02562 * 13 11 10 15 15 C 1.53504 * 88.04678 * 207.05024 * 14 13 11 16 16 N 1.46499 * 114.20382 * 220.37387 * 15 14 13 17 17 C 1.35316 * 125.86841 * 84.71602 * 16 15 14 18 18 C 1.35353 * 106.17181 * 179.90219 * 17 16 15 19 19 C 1.50700 * 126.74884 * 180.12613 * 18 17 16 20 20 N 1.46903 * 109.46896 * 95.29508 * 19 18 17 21 21 C 1.46902 * 110.99699 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.47255 * 180.02562 * 21 20 19 23 23 O 1.42905 * 109.47070 * 64.99657 * 22 21 20 24 24 N 1.33768 * 106.49641 * 0.35251 * 18 17 16 25 25 N 1.28630 * 108.88712 * 359.77204 * 24 18 17 26 26 C 1.47064 * 136.05760 * 359.93929 * 13 11 10 27 27 H 0.96998 * 120.00049 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47345 * 59.99840 * 10 9 7 29 29 H 1.09004 * 109.47145 * 299.99864 * 10 9 7 30 30 H 1.09002 * 113.46793 * 321.85996 * 14 13 11 31 31 H 1.08999 * 113.46805 * 92.24363 * 14 13 11 32 32 H 1.09002 * 114.20460 * 87.54848 * 15 14 13 33 33 H 1.07997 * 126.91482 * 0.02562 * 17 16 15 34 34 H 1.08994 * 109.47050 * 215.29386 * 19 18 17 35 35 H 1.09006 * 109.47066 * 335.30102 * 19 18 17 36 36 H 1.00901 * 111.00158 * 56.05024 * 20 19 18 37 37 H 1.08999 * 109.47478 * 299.99963 * 21 20 19 38 38 H 1.09004 * 109.47234 * 60.00140 * 21 20 19 39 39 H 1.08995 * 109.47332 * 185.00111 * 22 21 20 40 40 H 1.09004 * 109.46813 * 305.00305 * 22 21 20 41 41 H 0.96699 * 113.99670 * 180.02562 * 23 22 21 42 42 H 1.08999 * 113.47096 * 267.69948 * 26 13 11 43 43 H 1.09005 * 113.46966 * 38.08340 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.7296 -7.8093 -0.0016 15 6 4.0952 -7.8640 0.6975 16 7 4.9742 -8.9324 0.2158 17 6 5.7903 -8.8625 -0.8612 18 6 6.4149 -10.0607 -0.9393 19 6 7.4296 -10.4831 -1.9703 20 7 8.7833 -10.2582 -1.4459 21 6 9.8011 -10.6589 -2.4265 22 6 11.1946 -10.4111 -1.8455 23 8 11.3993 -11.2647 -0.7178 24 7 5.9506 -10.7979 0.0757 25 7 5.0988 -10.1007 0.7412 26 6 4.3052 -6.5117 -0.0008 27 1 -0.4850 0.8400 0.0004 28 1 3.1245 -3.7313 0.8894 29 1 3.1245 -3.7313 -0.8906 30 1 1.9112 -8.1810 0.6149 31 1 2.7359 -8.2446 -1.0008 32 1 4.0435 -7.8026 1.7846 33 1 5.9190 -8.0195 -1.5239 34 1 7.2988 -11.5412 -2.1966 35 1 7.2900 -9.8971 -2.8788 36 1 8.9161 -10.7397 -0.5691 37 1 9.6869 -11.7182 -2.6564 38 1 9.6777 -10.0739 -3.3379 39 1 11.9477 -10.6243 -2.6040 40 1 11.2781 -9.3701 -1.5330 41 1 12.2641 -11.1610 -0.2979 42 1 4.7318 -6.6019 -0.9998 43 1 4.8268 -5.7794 0.6155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105169150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = 33.813075 kcal Electronic energy + Delta-G solvation = -25695.907733 eV Core-core repulsion = 21712.365242 eV Total energy + Delta-G solvation = -3983.542492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.36276 -41.54992 -39.19924 -38.41228 -36.53716 -34.70870 -34.57990 -32.67864 -31.88981 -29.79704 -29.28527 -27.68546 -27.27174 -26.03526 -25.01401 -22.70454 -22.46567 -21.91262 -20.50141 -19.61305 -18.81893 -18.45124 -18.10079 -17.54387 -16.88919 -16.84298 -16.80116 -16.46025 -16.17423 -16.05216 -15.84017 -15.32358 -15.05833 -14.55706 -14.47459 -14.34146 -14.14940 -13.93503 -13.76149 -13.46775 -13.35871 -13.16821 -12.86285 -12.85539 -12.64140 -12.52587 -12.37468 -12.10723 -11.80841 -11.76481 -11.16808 -11.12384 -11.06475 -10.88819 -10.29582 -10.25968 -10.02837 -9.39506 -8.68590 -8.34386 -6.13340 0.56538 0.89809 1.27240 1.40314 1.44918 1.45143 1.51222 1.58660 1.96991 2.27185 2.65981 3.00233 3.03799 3.24211 3.35255 3.51197 3.53653 3.63620 3.71406 3.88737 4.06899 4.20053 4.24768 4.25107 4.35282 4.38164 4.42891 4.47607 4.48967 4.56965 4.62486 4.64083 4.65284 4.94355 4.94931 5.00765 5.13936 5.42351 5.58585 6.01227 6.19842 6.32215 6.34076 6.92930 6.94722 7.07104 7.48099 8.74401 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.001826 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.873140 B =15328.071509 C =16838.150189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.086 0.914 9 S -0.153 6.153 10 C -0.119 4.119 11 C 0.572 3.428 12 O -0.559 6.559 13 N -0.646 5.646 14 C 0.099 3.901 15 C 0.116 3.884 16 N -0.275 5.275 17 C -0.014 4.014 18 C -0.033 4.033 19 C 0.148 3.852 20 N -0.688 5.688 21 C 0.055 3.945 22 C 0.074 3.926 23 O -0.600 6.600 24 N -0.297 5.297 25 N -0.113 5.113 26 C 0.105 3.895 27 H 0.271 0.729 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.161 0.839 33 H 0.230 0.770 34 H 0.042 0.958 35 H 0.116 0.884 36 H 0.342 0.658 37 H 0.030 0.970 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.396 0.604 42 H 0.128 0.872 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.714 -19.513 -5.483 31.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.693 4.693 8 H 0.104 0.896 9 S 0.074 5.926 10 C -0.270 4.270 11 C 0.361 3.639 12 O -0.436 6.436 13 N -0.383 5.383 14 C -0.025 4.025 15 C 0.013 3.987 16 N -0.068 5.068 17 C -0.166 4.166 18 C -0.171 4.171 19 C 0.018 3.982 20 N -0.319 5.319 21 C -0.074 4.074 22 C -0.004 4.004 23 O -0.409 6.409 24 N -0.164 5.164 25 N -0.091 5.091 26 C -0.018 4.018 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.179 0.821 33 H 0.247 0.753 34 H 0.060 0.940 35 H 0.134 0.866 36 H 0.159 0.841 37 H 0.049 0.951 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.246 0.754 42 H 0.146 0.854 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 21.563 -19.993 -4.671 29.774 hybrid contribution 1.872 0.987 -0.415 2.157 sum 23.435 -19.006 -5.086 30.599 Atomic orbital electron populations 1.70176 1.08010 1.28684 1.47912 1.26127 0.95932 1.03340 0.93732 0.85013 0.77796 0.75685 0.79575 1.18493 1.20688 1.18612 1.23158 0.95422 0.91705 1.58977 0.89550 1.85677 1.10405 0.99403 1.97090 1.23283 1.03620 0.92887 1.07174 1.19628 0.84733 0.85145 0.74366 1.90735 1.17008 1.85323 1.50529 1.49060 1.09068 1.05811 1.74393 1.23438 0.96910 0.80128 1.02067 1.23604 0.88648 0.84162 1.02314 1.47222 1.28847 1.11272 1.19493 1.23941 0.96002 1.02455 0.94166 1.22177 1.03062 0.92549 0.99360 1.20162 0.84563 0.99810 0.93691 1.60593 1.01487 1.62888 1.06950 1.22139 0.90234 0.99206 0.95789 1.22318 0.96114 0.93761 0.88179 1.86417 1.42091 1.64985 1.47378 1.75032 1.08118 1.26551 1.06656 1.78325 1.17396 0.91567 1.21814 1.23684 0.81033 0.93529 1.03580 0.92022 0.86783 0.86770 0.89345 0.87888 0.82149 0.75340 0.94027 0.86601 0.84084 0.95125 0.87555 0.91352 0.92537 0.75400 0.85418 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.77 13.22 21.65 0.29 -54.48 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 42.03 29.55 68.60 2.03 44.06 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.54 -29.79 9.50 67.95 0.65 -29.15 16 8 H 0.09 4.31 7.80 -2.91 -0.02 4.28 16 9 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 10 C -0.12 -4.30 5.98 71.24 0.43 -3.87 16 11 C 0.57 19.62 8.10 87.66 0.71 20.33 16 12 O -0.56 -25.14 16.64 -3.03 -0.05 -25.19 16 13 N -0.65 -14.12 3.69 -857.64 -3.17 -17.29 16 14 C 0.10 1.70 8.42 83.18 0.70 2.40 16 15 C 0.12 1.46 5.34 45.50 0.24 1.70 16 16 N -0.28 -4.33 3.56 -326.21 -1.16 -5.49 16 17 C -0.01 -0.17 10.72 83.49 0.89 0.72 16 18 C -0.03 -0.55 6.76 41.60 0.28 -0.27 16 19 C 0.15 1.82 6.25 85.56 0.53 2.35 16 20 N -0.69 -9.14 6.49 -517.91 -3.36 -12.50 16 21 C 0.06 0.53 6.11 86.30 0.53 1.05 16 22 C 0.07 0.61 7.39 71.98 0.53 1.15 16 23 O -0.60 -7.02 13.18 -148.98 -1.96 -8.99 16 24 N -0.30 -7.11 12.41 -48.60 -0.60 -7.71 16 25 N -0.11 -2.62 13.16 37.02 0.49 -2.13 16 26 C 0.10 1.12 7.77 83.23 0.65 1.77 16 27 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 29 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.16 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.23 0.83 6.78 -2.91 -0.02 0.81 16 34 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.34 6.06 8.28 -89.69 -0.74 5.32 16 37 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 41 H 0.40 1.34 9.12 -74.06 -0.68 0.66 16 42 H 0.13 0.67 6.38 -2.39 -0.02 0.66 16 43 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -85.23 385.99 -2.42 -87.64 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -0.36 Total: 11.98 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 6.61 Total: -0.60 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -7.52 Total: -99.60 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -2.01 Total: -34.18 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -85.23 -2.42 -87.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105169150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.456 kcal (2) G-P(sol) polarization free energy of solvation -85.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds