Wall clock time and date at job start Sat Apr 11 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.51495 * 2 1 4 4 N 1.46493 * 109.47395 * 59.99322 * 3 2 1 5 5 C 1.34782 * 120.00142 * 180.02562 * 4 3 2 6 6 O 1.21550 * 119.99642 * 0.02562 * 5 4 3 7 7 C 1.47872 * 120.00361 * 180.02562 * 5 4 3 8 8 N 1.32845 * 119.72135 * 0.02562 * 7 5 4 9 9 C 1.31365 * 121.68949 * 179.68132 * 8 7 5 10 10 C 1.39000 * 120.93345 * 0.59131 * 9 8 7 11 11 F 1.35106 * 120.32963 * 179.69776 * 10 9 8 12 12 C 1.38715 * 119.34111 * 359.42540 * 10 9 8 13 13 C 1.38836 * 118.44952 * 0.27149 * 12 10 9 14 14 F 1.35102 * 120.48648 * 180.02562 * 13 12 10 15 15 C 1.53293 * 109.51566 * 239.88980 * 2 1 3 16 16 N 1.47155 * 108.38533 * 292.33334 * 15 2 1 17 17 C 1.36938 * 120.97739 * 129.44052 * 16 15 2 18 18 H 1.08004 * 119.99603 * 206.23235 * 17 16 15 19 19 C 1.38807 * 120.00646 * 26.24160 * 17 16 15 20 20 N 1.31621 * 119.99855 * 16.90944 * 19 17 16 21 21 Si 1.86795 * 120.00181 * 196.91089 * 19 17 16 22 22 H 1.48500 * 109.47493 * 60.00004 * 21 19 17 23 23 H 1.48506 * 109.46974 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47088 * 299.99435 * 21 19 17 25 25 C 1.47148 * 118.03744 * 309.46057 * 16 15 2 26 26 C 1.53300 * 108.38360 * 50.53785 * 25 16 15 27 27 O 1.42959 * 109.26297 * 307.72090 * 26 25 16 28 28 H 1.09010 * 109.46616 * 60.00318 * 1 2 3 29 29 H 1.08993 * 109.47569 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47584 * 300.00943 * 1 2 3 31 31 H 1.09000 * 109.46866 * 299.98919 * 3 2 1 32 32 H 1.09009 * 109.46997 * 179.97438 * 3 2 1 33 33 H 0.96994 * 120.00216 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.53490 * 180.29157 * 9 8 7 35 35 H 1.07999 * 120.77687 * 180.25434 * 12 10 9 36 36 H 1.09003 * 109.68014 * 52.05308 * 15 2 1 37 37 H 1.08994 * 109.68182 * 172.56888 * 15 2 1 38 38 H 0.97003 * 120.00425 * 180.02562 * 20 19 17 39 39 H 1.09003 * 109.68209 * 170.25639 * 25 16 15 40 40 H 1.09000 * 109.68162 * 290.81603 * 25 16 15 41 41 H 1.09002 * 109.51105 * 67.61837 * 26 25 16 42 42 H 1.09000 * 109.51561 * 187.72563 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5532 2.1331 1.1960 5 6 1.8793 3.4234 1.4090 6 8 2.5779 4.0138 0.6084 7 6 1.3874 4.1209 2.6165 8 7 0.6246 3.4702 3.4881 9 6 0.1716 4.0500 4.5764 10 6 0.4659 5.3801 4.8527 11 9 -0.0115 5.9660 5.9726 12 6 1.2592 6.0983 3.9700 13 6 1.7287 5.4577 2.8313 14 9 2.5049 6.1179 1.9442 15 6 2.0421 -0.7248 -1.2499 16 7 1.6970 -2.1506 -1.1337 17 6 1.0619 -2.8075 -2.1537 18 1 0.4493 -3.6712 -1.9410 19 6 1.2055 -2.3635 -3.4610 20 7 2.1871 -1.5442 -3.7736 21 14 0.0058 -2.9287 -4.7765 22 1 -1.3697 -2.5105 -4.4047 23 1 0.3741 -2.3163 -6.0783 24 1 0.0591 -4.4082 -4.8923 25 6 2.0541 -2.8495 0.1110 26 6 1.5414 -2.0212 1.2947 27 8 2.0074 -0.6758 1.1659 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.6783 1.9561 -0.8901 32 1 3.1312 1.4412 0.0005 33 1 0.9954 1.6621 1.8347 34 1 -0.4420 3.4867 5.2637 35 1 1.5056 7.1318 4.1639 36 1 1.5698 -0.3040 -2.1376 37 1 3.1239 -0.6130 -1.3217 38 1 2.2873 -1.2336 -4.6871 39 1 1.5898 -3.8356 0.1246 40 1 3.1373 -2.9522 0.1766 41 1 0.4514 -2.0292 1.2998 42 1 1.9130 -2.4483 2.2262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108029137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:13 Heat of formation + Delta-G solvation = -97.114690 kcal Electronic energy + Delta-G solvation = -29945.258820 eV Core-core repulsion = 25369.905737 eV Total energy + Delta-G solvation = -4575.353083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.68881 -49.37686 -40.79552 -39.46474 -38.58060 -35.02459 -34.35023 -33.09023 -31.93668 -31.28272 -31.10509 -27.95166 -26.70788 -25.90683 -24.89926 -24.01525 -23.23156 -21.51667 -20.76028 -19.01319 -18.69941 -18.58621 -18.11183 -17.00449 -16.80206 -16.40835 -15.97367 -15.90523 -15.72421 -15.31131 -15.13157 -14.87996 -14.72593 -14.36568 -14.06922 -13.87826 -13.76706 -13.51592 -13.50053 -13.08710 -12.91964 -12.75919 -12.48008 -11.91644 -11.58100 -11.19688 -11.02334 -10.82282 -10.73321 -10.67978 -10.44269 -10.32095 -10.27572 -10.12353 -9.91729 -9.54352 -9.48737 -9.06062 -8.86897 -8.54204 -6.75028 -5.85324 -3.28682 -0.15158 0.28983 2.32245 2.85532 3.17275 3.27044 3.34227 3.40846 3.41160 3.47197 3.63007 3.98164 4.15705 4.27642 4.42992 4.53555 4.87761 5.07119 5.13448 5.16114 5.33226 5.46380 5.51081 5.69187 5.85812 5.92919 5.93877 5.99069 6.07204 6.13901 6.29271 6.43770 6.53364 6.64606 6.75542 6.82540 6.91370 7.06411 7.45337 7.57474 7.69737 7.87531 8.16363 8.32262 9.09933 9.73056 10.30212 11.22692 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.002586 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.700900 B =10826.447023 C =11410.590561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.078 3.922 3 C 0.137 3.863 4 N -0.690 5.690 5 C 0.562 3.438 6 O -0.523 6.523 7 C 0.043 3.957 8 N -0.399 5.399 9 C 0.067 3.933 10 C 0.101 3.899 11 F -0.116 7.116 12 C -0.158 4.158 13 C 0.143 3.857 14 F -0.094 7.094 15 C 0.160 3.840 16 N -0.590 5.590 17 C -0.255 4.255 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.413 0.587 34 H 0.184 0.816 35 H 0.168 0.832 36 H 0.097 0.903 37 H 0.030 0.970 38 H 0.256 0.744 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.048 0.952 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 12.845 18.207 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 C 0.014 3.986 4 N -0.341 5.341 5 C 0.345 3.655 6 O -0.399 6.399 7 C -0.097 4.097 8 N -0.109 5.109 9 C -0.096 4.096 10 C 0.079 3.921 11 F -0.094 7.094 12 C -0.185 4.185 13 C 0.120 3.880 14 F -0.072 7.072 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.209 1.209 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.303 6.303 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.250 0.750 34 H 0.201 0.799 35 H 0.186 0.814 36 H 0.115 0.885 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.165 12.528 17.333 21.788 hybrid contribution -0.741 0.490 -0.273 0.929 sum -4.906 13.018 17.060 22.013 Atomic orbital electron populations 1.22216 0.95645 1.03320 1.00854 1.22554 0.93678 0.90414 0.89649 1.21496 1.00171 0.90114 0.86851 1.45806 1.51901 1.10593 1.25817 1.17493 0.81262 0.82638 0.84089 1.90885 1.37549 1.66256 1.45191 1.21651 0.99528 0.91011 0.97464 1.67744 1.06093 1.35962 1.01102 1.23100 1.00076 0.90827 0.95563 1.18763 0.96230 0.92627 0.84492 1.91591 1.85706 1.83968 1.48181 1.21689 1.00002 1.03149 0.93687 1.18323 0.91659 0.90038 0.88005 1.91681 1.70500 1.79524 1.65451 1.21290 0.97853 0.83957 0.93560 1.43982 1.68604 1.04911 1.13886 1.19113 1.21710 1.12209 0.85388 0.91457 1.25035 0.97272 1.00107 0.97085 1.70003 1.29162 1.36746 1.18647 0.86358 0.80995 0.78329 0.81017 1.20976 1.21548 1.20864 1.21602 0.97555 0.95226 0.87348 1.23037 0.98363 0.83044 0.98712 1.87818 1.72990 1.25819 1.43678 0.91879 0.90752 0.93745 0.89610 0.90384 0.74965 0.79892 0.81444 0.88500 0.95203 0.93354 0.92039 0.95645 0.93339 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 7.92 37.16 0.29 -2.48 16 2 C 0.08 1.44 0.76 -90.47 -0.07 1.37 16 3 C 0.14 2.34 4.82 -4.05 -0.02 2.32 16 4 N -0.69 -10.37 5.14 -61.24 -0.31 -10.68 16 5 C 0.56 8.65 7.80 -12.31 -0.10 8.55 16 6 O -0.52 -9.62 15.31 5.32 0.08 -9.54 16 7 C 0.04 0.53 6.75 -82.97 -0.56 -0.03 16 8 N -0.40 -4.15 9.53 -9.70 -0.09 -4.24 16 9 C 0.07 0.49 11.17 -17.47 -0.20 0.30 16 10 C 0.10 0.71 7.35 -39.12 -0.29 0.42 16 11 F -0.12 -0.78 17.28 2.25 0.04 -0.75 16 12 C -0.16 -1.20 10.14 -39.18 -0.40 -1.59 16 13 C 0.14 1.55 7.31 -38.84 -0.28 1.27 16 14 F -0.09 -1.20 15.54 2.25 0.04 -1.17 16 15 C 0.16 3.68 4.12 -3.53 -0.01 3.67 16 16 N -0.59 -14.21 2.57 -171.83 -0.44 -14.65 16 17 C -0.26 -6.71 9.65 -15.06 -0.15 -6.86 16 18 H 0.07 1.73 7.88 -52.48 -0.41 1.32 16 19 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 20 N -0.90 -25.46 11.14 55.49 0.62 -24.85 16 21 Si 0.90 21.12 29.59 -169.99 -5.03 16.10 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.11 2.21 6.74 -3.53 -0.02 2.19 16 26 C 0.05 0.79 6.60 37.31 0.25 1.04 16 27 O -0.38 -7.02 9.98 -35.23 -0.35 -7.37 16 28 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 29 H 0.07 1.38 6.11 -51.93 -0.32 1.06 16 30 H 0.04 0.65 6.87 -51.93 -0.36 0.29 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 33 H 0.41 5.75 6.52 -40.82 -0.27 5.49 16 34 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.10 2.46 6.13 -51.93 -0.32 2.14 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.80 6.25 -51.93 -0.32 0.48 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -30.81 354.48 -6.68 -37.49 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.93 Total: 4.14 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -1.64 Total: 10.18 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.23 Total: -54.42 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.27 Total: -16.91 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.07 Total: -1.91 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.81 -6.68 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108029137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.626 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds