Wall clock time and date at job start Sat Apr 11 2020 06:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.51495 * 2 1 4 4 N 1.46493 * 109.47395 * 59.99322 * 3 2 1 5 5 C 1.34782 * 120.00142 * 180.02562 * 4 3 2 6 6 O 1.21550 * 119.99642 * 0.02562 * 5 4 3 7 7 C 1.47872 * 120.00361 * 180.02562 * 5 4 3 8 8 N 1.32845 * 119.72135 * 0.02562 * 7 5 4 9 9 C 1.31365 * 121.68949 * 179.68132 * 8 7 5 10 10 C 1.39000 * 120.93345 * 0.59131 * 9 8 7 11 11 F 1.35106 * 120.32963 * 179.69776 * 10 9 8 12 12 C 1.38715 * 119.34111 * 359.42540 * 10 9 8 13 13 C 1.38836 * 118.44952 * 0.27149 * 12 10 9 14 14 F 1.35102 * 120.48648 * 180.02562 * 13 12 10 15 15 C 1.53293 * 109.51566 * 239.88980 * 2 1 3 16 16 N 1.47155 * 108.38533 * 292.33334 * 15 2 1 17 17 C 1.36938 * 120.97739 * 129.44052 * 16 15 2 18 18 H 1.08004 * 119.99603 * 206.23235 * 17 16 15 19 19 C 1.38807 * 120.00646 * 26.24160 * 17 16 15 20 20 N 1.31621 * 119.99855 * 16.90944 * 19 17 16 21 21 Si 1.86795 * 120.00181 * 196.91089 * 19 17 16 22 22 H 1.48500 * 109.47493 * 60.00004 * 21 19 17 23 23 H 1.48506 * 109.46974 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47088 * 299.99435 * 21 19 17 25 25 C 1.47148 * 118.03744 * 309.46057 * 16 15 2 26 26 C 1.53300 * 108.38360 * 50.53785 * 25 16 15 27 27 O 1.42959 * 109.26297 * 307.72090 * 26 25 16 28 28 H 1.09010 * 109.46616 * 60.00318 * 1 2 3 29 29 H 1.08993 * 109.47569 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47584 * 300.00943 * 1 2 3 31 31 H 1.09000 * 109.46866 * 299.98919 * 3 2 1 32 32 H 1.09009 * 109.46997 * 179.97438 * 3 2 1 33 33 H 0.96994 * 120.00216 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.53490 * 180.29157 * 9 8 7 35 35 H 1.07999 * 120.77687 * 180.25434 * 12 10 9 36 36 H 1.09003 * 109.68014 * 52.05308 * 15 2 1 37 37 H 1.08994 * 109.68182 * 172.56888 * 15 2 1 38 38 H 0.97003 * 120.00425 * 180.02562 * 20 19 17 39 39 H 1.09003 * 109.68209 * 170.25639 * 25 16 15 40 40 H 1.09000 * 109.68162 * 290.81603 * 25 16 15 41 41 H 1.09002 * 109.51105 * 67.61837 * 26 25 16 42 42 H 1.09000 * 109.51561 * 187.72563 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5532 2.1331 1.1960 5 6 1.8793 3.4234 1.4090 6 8 2.5779 4.0138 0.6084 7 6 1.3874 4.1209 2.6165 8 7 0.6246 3.4702 3.4881 9 6 0.1716 4.0500 4.5764 10 6 0.4659 5.3801 4.8527 11 9 -0.0115 5.9660 5.9726 12 6 1.2592 6.0983 3.9700 13 6 1.7287 5.4577 2.8313 14 9 2.5049 6.1179 1.9442 15 6 2.0421 -0.7248 -1.2499 16 7 1.6970 -2.1506 -1.1337 17 6 1.0619 -2.8075 -2.1537 18 1 0.4493 -3.6712 -1.9410 19 6 1.2055 -2.3635 -3.4610 20 7 2.1871 -1.5442 -3.7736 21 14 0.0058 -2.9287 -4.7765 22 1 -1.3697 -2.5105 -4.4047 23 1 0.3741 -2.3163 -6.0783 24 1 0.0591 -4.4082 -4.8923 25 6 2.0541 -2.8495 0.1110 26 6 1.5414 -2.0212 1.2947 27 8 2.0074 -0.6758 1.1659 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.6783 1.9561 -0.8901 32 1 3.1312 1.4412 0.0005 33 1 0.9954 1.6621 1.8347 34 1 -0.4420 3.4867 5.2637 35 1 1.5056 7.1318 4.1639 36 1 1.5698 -0.3040 -2.1376 37 1 3.1239 -0.6130 -1.3217 38 1 2.2873 -1.2336 -4.6871 39 1 1.5898 -3.8356 0.1246 40 1 3.1373 -2.9522 0.1766 41 1 0.4514 -2.0292 1.2998 42 1 1.9130 -2.4483 2.2262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108029137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:12 Heat of formation + Delta-G solvation = -118.178185 kcal Electronic energy + Delta-G solvation = -29946.172202 eV Core-core repulsion = 25369.905737 eV Total energy + Delta-G solvation = -4576.266465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.26857 -50.23569 -41.70848 -40.79461 -39.86567 -36.58490 -35.97862 -33.90252 -33.22433 -33.10372 -32.04745 -29.56860 -28.12628 -27.55036 -25.78837 -24.99926 -24.80798 -23.00613 -22.00773 -20.43253 -19.59669 -19.39428 -19.15484 -18.79075 -17.58044 -17.41884 -17.14170 -16.98001 -16.78021 -16.61039 -16.37781 -16.11300 -15.90415 -15.59021 -15.57643 -15.27341 -15.09783 -14.67418 -14.57119 -14.39961 -14.31261 -13.89338 -13.69481 -13.42876 -13.17639 -12.91292 -12.74718 -12.52266 -12.43282 -12.17467 -11.95231 -11.85023 -11.65003 -11.17675 -11.10176 -11.00659 -10.74085 -10.48287 -10.36642 -10.06040 -8.70532 -7.88324 -5.34980 -0.92121 -0.35367 1.39586 1.47370 1.49577 1.56297 1.80518 2.35293 2.43708 2.49647 2.73602 2.77754 2.86149 3.25752 3.38123 3.42495 3.51379 3.81153 3.91657 4.01480 4.11672 4.19900 4.34145 4.43146 4.48356 4.55987 4.59703 4.63226 4.72287 4.78806 4.97930 5.05904 5.12522 5.21729 5.22534 5.25248 5.36656 5.54623 5.62793 6.13573 6.30533 6.37971 6.45232 6.99040 7.08290 7.77633 8.31696 9.17281 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.002586 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.700900 B =10826.447023 C =11410.590561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 C 0.146 3.854 4 N -0.682 5.682 5 C 0.560 3.440 6 O -0.563 6.563 7 C 0.021 3.979 8 N -0.411 5.411 9 C 0.080 3.920 10 C 0.119 3.881 11 F -0.107 7.107 12 C -0.143 4.143 13 C 0.128 3.872 14 F -0.113 7.113 15 C 0.168 3.832 16 N -0.607 5.607 17 C -0.260 4.260 18 H 0.074 0.926 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.276 1.276 25 C 0.102 3.898 26 C 0.053 3.947 27 O -0.386 6.386 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.421 0.579 34 H 0.221 0.779 35 H 0.196 0.804 36 H 0.068 0.932 37 H -0.006 1.006 38 H 0.250 0.750 39 H 0.073 0.927 40 H 0.012 0.988 41 H 0.061 0.939 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 13.152 21.430 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 C 0.022 3.978 4 N -0.333 5.333 5 C 0.346 3.654 6 O -0.442 6.442 7 C -0.117 4.117 8 N -0.121 5.121 9 C -0.083 4.083 10 C 0.097 3.903 11 F -0.085 7.085 12 C -0.169 4.169 13 C 0.105 3.895 14 F -0.091 7.091 15 C 0.042 3.958 16 N -0.331 5.331 17 C -0.389 4.389 18 H 0.092 0.908 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.795 3.205 22 H -0.201 1.201 23 H -0.224 1.224 24 H -0.201 1.201 25 C -0.023 4.023 26 C -0.025 4.025 27 O -0.305 6.305 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.260 0.740 34 H 0.237 0.763 35 H 0.213 0.787 36 H 0.086 0.914 37 H 0.012 0.988 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.030 0.970 41 H 0.079 0.921 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.411 12.813 20.600 25.093 hybrid contribution -0.050 0.381 -1.103 1.168 sum -6.461 13.195 19.497 24.413 Atomic orbital electron populations 1.22111 0.93955 1.02925 1.02060 1.22191 0.94675 0.90310 0.87557 1.21187 0.99142 0.89707 0.87807 1.45615 1.51944 1.10686 1.25104 1.17970 0.80384 0.82323 0.84765 1.90854 1.39324 1.67027 1.46955 1.21117 1.01799 0.91536 0.97240 1.67714 1.06323 1.36255 1.01810 1.23690 0.98897 0.91148 0.94614 1.18713 0.95046 0.92401 0.84127 1.91631 1.85382 1.83828 1.47660 1.21893 0.98757 1.04243 0.92045 1.18495 0.92323 0.89797 0.88929 1.91632 1.71255 1.79784 1.66396 1.21044 0.95480 0.84387 0.94935 1.44238 1.68624 1.05500 1.14718 1.19471 1.21296 1.12081 0.86084 0.90846 1.25786 0.98792 1.00770 0.99157 1.70175 1.31028 1.38470 1.18539 0.85355 0.79155 0.77979 0.78057 1.20078 1.22413 1.20130 1.21821 0.97036 0.96354 0.87125 1.23117 0.99151 0.81686 0.98516 1.87830 1.73324 1.26517 1.42827 0.92541 0.91821 0.90653 0.90279 0.92080 0.74048 0.76301 0.78712 0.91360 0.98815 0.94059 0.90907 0.96964 0.92084 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 7.92 71.98 0.57 -4.49 16 2 C 0.09 3.49 0.76 -10.70 -0.01 3.48 16 3 C 0.15 5.16 4.82 86.38 0.42 5.58 16 4 N -0.68 -20.43 5.14 -465.95 -2.40 -22.83 16 5 C 0.56 17.52 7.80 86.79 0.68 18.20 16 6 O -0.56 -21.67 15.31 -3.87 -0.06 -21.73 16 7 C 0.02 0.49 6.75 41.88 0.28 0.77 16 8 N -0.41 -7.55 9.53 -184.61 -1.76 -9.31 16 9 C 0.08 0.87 11.17 84.95 0.95 1.82 16 10 C 0.12 1.22 7.35 22.57 0.17 1.39 16 11 F -0.11 -0.97 17.28 44.97 0.78 -0.20 16 12 C -0.14 -1.75 10.14 22.53 0.23 -1.52 16 13 C 0.13 2.65 7.31 22.75 0.17 2.82 16 14 F -0.11 -2.94 15.54 44.97 0.70 -2.24 16 15 C 0.17 8.09 4.12 86.35 0.36 8.44 16 16 N -0.61 -29.68 2.57 -697.54 -1.79 -31.48 16 17 C -0.26 -13.79 9.65 84.03 0.81 -12.98 16 18 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 19 C -0.05 -2.72 4.95 84.86 0.42 -2.30 16 20 N -0.94 -55.08 11.14 21.65 0.24 -54.84 16 21 Si 0.97 44.05 29.59 68.60 2.03 46.08 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.10 4.08 6.74 86.36 0.58 4.66 16 26 C 0.05 1.67 6.60 72.08 0.48 2.15 16 27 O -0.39 -13.65 9.98 -148.98 -1.49 -15.14 16 28 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.06 2.26 6.11 -2.39 -0.01 2.25 16 30 H 0.07 2.01 6.87 -2.39 -0.02 2.00 16 31 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.42 11.12 6.52 -92.71 -0.60 10.51 16 34 H 0.22 0.71 8.06 -2.91 -0.02 0.69 16 35 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.07 3.66 6.13 -2.39 -0.01 3.65 16 37 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 39 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.06 1.83 6.25 -2.39 -0.01 1.82 16 42 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -70.09 354.48 2.82 -67.27 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.48 Total: 16.41 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: 6.09 Total: 28.00 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -5.71 Total: -118.45 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -1.55 Total: -36.87 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 1.48 Total: -2.43 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -70.09 2.82 -67.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108029137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.910 kcal (2) G-P(sol) polarization free energy of solvation -70.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds