Wall clock time and date at job start Sat Apr 11 2020 06:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00453 * 2 1 4 4 H 1.48502 * 109.47252 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47075 * 300.00141 * 3 2 1 6 6 H 1.48496 * 109.47115 * 59.99630 * 3 2 1 7 7 C 1.37880 * 119.99568 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00195 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99694 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00250 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00135 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47289 * 179.97438 * 13 11 10 15 15 C 1.76209 * 99.99789 * 179.97438 * 14 13 11 16 16 N 1.31284 * 126.48497 * 0.02562 * 15 14 13 17 17 N 1.28524 * 109.85398 * 179.74060 * 16 15 14 18 18 C 1.30290 * 110.08135 * 359.97438 * 17 16 15 19 19 C 1.50699 * 126.34086 * 179.97438 * 18 17 16 20 20 C 1.53174 * 109.54120 * 59.53901 * 19 18 17 21 21 C 1.53099 * 109.16631 * 183.15267 * 20 19 18 22 22 O 1.42903 * 109.41347 * 57.60414 * 21 20 19 23 23 C 1.42904 * 114.09839 * 298.84440 * 22 21 20 24 24 C 1.53093 * 109.41408 * 61.16017 * 23 22 21 25 25 N 1.36540 * 126.48062 * 179.71508 * 15 14 13 26 26 N 1.36593 * 127.14462 * 0.25769 * 25 15 14 27 27 H 0.97004 * 119.99803 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46595 * 59.99961 * 9 7 2 29 29 H 1.09000 * 109.47039 * 300.00056 * 9 7 2 30 30 H 0.97001 * 120.00278 * 0.02562 * 10 9 7 31 31 H 1.08998 * 109.47203 * 59.99354 * 13 11 10 32 32 H 1.09005 * 109.46864 * 299.99985 * 13 11 10 33 33 H 1.09003 * 109.54127 * 179.80097 * 19 18 17 34 34 H 1.09002 * 109.52743 * 303.05479 * 20 19 18 35 35 H 1.09004 * 109.52935 * 63.24594 * 20 19 18 36 36 H 1.09005 * 109.47656 * 297.62353 * 21 20 19 37 37 H 1.08994 * 109.48046 * 177.58847 * 21 20 19 38 38 H 1.08999 * 109.48242 * 301.17619 * 23 22 21 39 39 H 1.09003 * 109.47966 * 181.13787 * 23 22 21 40 40 H 1.09000 * 109.52538 * 182.48219 * 24 23 22 41 41 H 1.09001 * 109.52443 * 62.29622 * 24 23 22 42 42 H 1.00902 * 111.00484 * 90.02749 * 26 25 15 43 43 H 1.00900 * 111.00191 * 213.98563 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 1.7534 -4.8834 -0.0025 12 8 0.5610 -5.1049 -0.0017 13 6 2.7326 -6.0289 -0.0032 14 16 1.8275 -7.5964 -0.0033 15 6 3.1773 -8.7291 -0.0049 16 7 4.4538 -8.4223 -0.0052 17 7 5.1607 -9.4957 -0.0010 18 6 4.3848 -10.5423 0.0028 19 6 4.8280 -11.9826 0.0078 20 6 5.6783 -12.2527 1.2529 21 6 6.1891 -13.6953 1.2096 22 8 6.9358 -13.8989 0.0083 23 6 6.1791 -13.7068 -1.1887 24 6 5.6681 -12.2647 -1.2417 25 7 3.0935 -10.0919 -0.0001 26 7 1.9561 -10.8482 0.0019 27 1 -0.4850 0.8401 0.0004 28 1 0.6238 -2.5566 -0.8904 29 1 0.6245 -2.5571 0.8897 30 1 3.1565 -3.4356 -0.0021 31 1 3.3594 -5.9717 0.8867 32 1 3.3593 -5.9707 -0.8932 33 1 3.9535 -12.6332 0.0137 34 1 6.5254 -11.5669 1.2714 35 1 5.0717 -12.1078 2.1469 36 1 5.3424 -14.3814 1.2321 37 1 6.8299 -13.8800 2.0716 38 1 5.3323 -14.3931 -1.1976 39 1 6.8129 -13.8999 -2.0543 40 1 5.0540 -12.1282 -2.1319 41 1 6.5148 -11.5791 -1.2737 42 1 1.6557 -11.0522 -0.9395 43 1 2.0872 -11.6970 0.5316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116139430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:26 Heat of formation + Delta-G solvation = 9.989141 kcal Electronic energy + Delta-G solvation = -26178.717799 eV Core-core repulsion = 22194.142225 eV Total energy + Delta-G solvation = -3984.575575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.30800 -39.82547 -38.86614 -36.86760 -35.05998 -34.30458 -32.43674 -31.72354 -30.77013 -30.09312 -29.80102 -26.87964 -26.01544 -24.15833 -23.16872 -22.69799 -22.24670 -20.54941 -19.99076 -18.90984 -17.87867 -17.42737 -16.93706 -16.68768 -16.56260 -15.86293 -15.57459 -15.41584 -15.25574 -15.19146 -15.10136 -14.36116 -14.33015 -13.97118 -13.56966 -13.02494 -12.93039 -12.76324 -12.33912 -12.18757 -12.01232 -11.92318 -11.70105 -11.56451 -11.55177 -11.07273 -10.97395 -10.94969 -10.92511 -10.44678 -10.33536 -10.19027 -10.16527 -9.89618 -9.42614 -9.33896 -8.78918 -8.01616 -7.66007 -6.19354 -4.26438 0.87363 1.25228 1.84961 2.01472 2.44900 3.14120 3.23184 3.27478 3.30506 3.33719 3.45920 3.86626 3.94604 4.10440 4.20890 4.33847 4.37026 4.42898 4.61423 4.77309 4.85113 4.96397 4.97042 5.10716 5.15445 5.17953 5.19061 5.26567 5.27322 5.42049 5.46632 5.54855 5.55358 5.76807 5.96712 6.62116 6.98072 7.21749 7.28955 7.45598 7.60707 7.92098 8.30164 8.47952 8.68876 8.93975 9.39967 10.90812 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.029252 B = 0.001784 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.968507 B =15694.816554 C =16309.012078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.249 3.751 10 N -0.701 5.701 11 C 0.517 3.483 12 O -0.544 6.544 13 C -0.154 4.154 14 S 0.110 5.890 15 C 0.176 3.824 16 N -0.293 5.293 17 N -0.260 5.260 18 C 0.145 3.855 19 C 0.006 3.994 20 C -0.147 4.147 21 C 0.063 3.937 22 O -0.379 6.379 23 C 0.063 3.937 24 C -0.147 4.147 25 N -0.309 5.309 26 N -0.583 5.583 27 H 0.266 0.734 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.395 0.605 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.101 0.899 38 H 0.051 0.949 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.367 0.633 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.684 -31.203 -0.663 32.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.129 3.871 10 N -0.349 5.349 11 C 0.299 3.701 12 O -0.423 6.423 13 C -0.306 4.306 14 S 0.337 5.663 15 C -0.198 4.198 16 N -0.139 5.139 17 N -0.101 5.101 18 C -0.126 4.126 19 C -0.015 4.015 20 C -0.185 4.185 21 C -0.014 4.014 22 O -0.297 6.297 23 C -0.014 4.014 24 C -0.185 4.185 25 N -0.092 5.092 26 N -0.214 5.214 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.228 0.772 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.185 0.815 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 8.579 -29.968 -0.306 31.174 hybrid contribution 1.122 -0.219 -0.465 1.234 sum 9.701 -30.188 -0.771 31.717 Atomic orbital electron populations 1.69983 1.06112 1.27280 1.48831 1.24952 0.94934 0.99504 0.94615 0.86340 0.79865 0.82832 0.77761 1.19575 1.20782 1.20771 1.21256 0.93407 0.90298 1.53326 0.91678 1.19206 0.88211 0.81658 0.98061 1.46386 1.11622 1.05434 1.71468 1.19454 0.88388 0.83909 0.78320 1.90711 1.16140 1.84305 1.51148 1.23892 1.02910 0.94776 1.09048 1.86568 0.96344 0.92066 1.91292 1.27424 1.01099 0.85223 1.06060 1.74892 0.97740 1.19587 1.21681 1.73892 1.25535 0.94095 1.16533 1.25271 0.80750 0.98777 1.07761 1.19552 0.98541 0.85526 0.97897 1.22271 1.00927 0.98889 0.96456 1.22607 0.96444 0.94209 0.88138 1.87986 1.37786 1.90323 1.13637 1.22594 0.96272 0.94187 0.88309 1.22266 1.00983 0.98953 0.96320 1.44997 1.02443 1.04811 1.56988 1.59598 1.14552 1.25592 1.21692 0.92447 0.95198 0.95178 0.77200 0.86060 0.86114 0.90276 0.89102 0.90448 0.93040 0.88110 0.93080 0.88147 0.90683 0.89090 0.81484 0.80863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.62 9.28 -34.44 -0.32 -14.94 16 8 H 0.07 1.64 7.60 -52.49 -0.40 1.24 16 9 C 0.25 6.49 5.43 -5.19 -0.03 6.46 16 10 N -0.70 -14.46 5.55 -61.47 -0.34 -14.80 16 11 C 0.52 10.10 7.85 -10.98 -0.09 10.01 16 12 O -0.54 -12.64 15.86 5.55 0.09 -12.56 16 13 C -0.15 -2.29 5.72 36.01 0.21 -2.09 16 14 S 0.11 1.58 21.40 -107.50 -2.30 -0.72 16 15 C 0.18 2.39 8.20 -88.34 -0.72 1.67 16 16 N -0.29 -4.44 11.60 30.68 0.36 -4.09 16 17 N -0.26 -3.61 12.17 32.99 0.40 -3.20 16 18 C 0.15 1.50 6.65 -154.00 -1.02 0.48 16 19 C 0.01 0.04 2.66 -91.59 -0.24 -0.21 16 20 C -0.15 -0.92 5.40 -26.59 -0.14 -1.06 16 21 C 0.06 0.32 6.84 37.21 0.25 0.58 16 22 O -0.38 -2.74 10.77 -35.23 -0.38 -3.12 16 23 C 0.06 0.32 6.84 37.21 0.25 0.57 16 24 C -0.15 -0.90 5.40 -26.59 -0.14 -1.04 16 25 N -0.31 -3.24 3.81 -9.93 -0.04 -3.27 16 26 N -0.58 -3.88 10.37 60.35 0.63 -3.26 16 27 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.03 0.86 8.14 -51.92 -0.42 0.43 16 29 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.39 6.97 8.32 -40.82 -0.34 6.64 16 31 H 0.12 1.65 8.14 -51.92 -0.42 1.23 16 32 H 0.12 1.62 8.14 -51.91 -0.42 1.20 16 33 H 0.08 0.29 7.23 -51.93 -0.38 -0.08 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.37 1.67 9.21 -181.37 -1.67 0.00 16 43 H 0.37 1.35 8.20 -181.37 -1.49 -0.14 16 LS Contribution 377.97 15.07 5.70 5.70 Total: -1.00 -35.48 377.97 -10.75 -46.23 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.48 Total: 0.33 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -2.09 Total: 2.08 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 1.74 Total: -53.72 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.29 Total: -15.67 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.30 Total: -0.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.48 -10.75 -46.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116139430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.219 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds