Wall clock time and date at job start Sat Apr 11 2020 06:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00453 * 2 1 4 4 H 1.48502 * 109.47252 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47075 * 300.00141 * 3 2 1 6 6 H 1.48496 * 109.47115 * 59.99630 * 3 2 1 7 7 C 1.37880 * 119.99568 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00195 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99694 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00250 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00135 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47289 * 179.97438 * 13 11 10 15 15 C 1.76209 * 99.99789 * 179.97438 * 14 13 11 16 16 N 1.31284 * 126.48497 * 0.02562 * 15 14 13 17 17 N 1.28524 * 109.85398 * 179.74060 * 16 15 14 18 18 C 1.30290 * 110.08135 * 359.97438 * 17 16 15 19 19 C 1.50699 * 126.34086 * 179.97438 * 18 17 16 20 20 C 1.53174 * 109.54120 * 59.53901 * 19 18 17 21 21 C 1.53099 * 109.16631 * 183.15267 * 20 19 18 22 22 O 1.42903 * 109.41347 * 57.60414 * 21 20 19 23 23 C 1.42904 * 114.09839 * 298.84440 * 22 21 20 24 24 C 1.53093 * 109.41408 * 61.16017 * 23 22 21 25 25 N 1.36540 * 126.48062 * 179.71508 * 15 14 13 26 26 N 1.36593 * 127.14462 * 0.25769 * 25 15 14 27 27 H 0.97004 * 119.99803 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46595 * 59.99961 * 9 7 2 29 29 H 1.09000 * 109.47039 * 300.00056 * 9 7 2 30 30 H 0.97001 * 120.00278 * 0.02562 * 10 9 7 31 31 H 1.08998 * 109.47203 * 59.99354 * 13 11 10 32 32 H 1.09005 * 109.46864 * 299.99985 * 13 11 10 33 33 H 1.09003 * 109.54127 * 179.80097 * 19 18 17 34 34 H 1.09002 * 109.52743 * 303.05479 * 20 19 18 35 35 H 1.09004 * 109.52935 * 63.24594 * 20 19 18 36 36 H 1.09005 * 109.47656 * 297.62353 * 21 20 19 37 37 H 1.08994 * 109.48046 * 177.58847 * 21 20 19 38 38 H 1.08999 * 109.48242 * 301.17619 * 23 22 21 39 39 H 1.09003 * 109.47966 * 181.13787 * 23 22 21 40 40 H 1.09000 * 109.52538 * 182.48219 * 24 23 22 41 41 H 1.09001 * 109.52443 * 62.29622 * 24 23 22 42 42 H 1.00902 * 111.00484 * 90.02749 * 26 25 15 43 43 H 1.00900 * 111.00191 * 213.98563 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 1.7534 -4.8834 -0.0025 12 8 0.5610 -5.1049 -0.0017 13 6 2.7326 -6.0289 -0.0032 14 16 1.8275 -7.5964 -0.0033 15 6 3.1773 -8.7291 -0.0049 16 7 4.4538 -8.4223 -0.0052 17 7 5.1607 -9.4957 -0.0010 18 6 4.3848 -10.5423 0.0028 19 6 4.8280 -11.9826 0.0078 20 6 5.6783 -12.2527 1.2529 21 6 6.1891 -13.6953 1.2096 22 8 6.9358 -13.8989 0.0083 23 6 6.1791 -13.7068 -1.1887 24 6 5.6681 -12.2647 -1.2417 25 7 3.0935 -10.0919 -0.0001 26 7 1.9561 -10.8482 0.0019 27 1 -0.4850 0.8401 0.0004 28 1 0.6238 -2.5566 -0.8904 29 1 0.6245 -2.5571 0.8897 30 1 3.1565 -3.4356 -0.0021 31 1 3.3594 -5.9717 0.8867 32 1 3.3593 -5.9707 -0.8932 33 1 3.9535 -12.6332 0.0137 34 1 6.5254 -11.5669 1.2714 35 1 5.0717 -12.1078 2.1469 36 1 5.3424 -14.3814 1.2321 37 1 6.8299 -13.8800 2.0716 38 1 5.3323 -14.3931 -1.1976 39 1 6.8129 -13.8999 -2.0543 40 1 5.0540 -12.1282 -2.1319 41 1 6.5148 -11.5791 -1.2737 42 1 1.6557 -11.0522 -0.9395 43 1 2.0872 -11.6970 0.5316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116139430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:26 Heat of formation + Delta-G solvation = -16.551920 kcal Electronic energy + Delta-G solvation = -26179.868706 eV Core-core repulsion = 22194.142225 eV Total energy + Delta-G solvation = -3985.726482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.20516 -40.57310 -40.28356 -37.63436 -36.22870 -35.61655 -34.42543 -32.13878 -31.88781 -31.19481 -30.71532 -28.78801 -26.63288 -24.70970 -24.58942 -24.04844 -23.01009 -21.66953 -21.11064 -19.84538 -18.92369 -18.57748 -18.06158 -17.59710 -17.41086 -17.03844 -16.97627 -16.77215 -16.23648 -16.06243 -15.85534 -15.71971 -15.17166 -14.89460 -14.59111 -14.58406 -14.17772 -14.00987 -13.53717 -13.39310 -13.22092 -12.88506 -12.87641 -12.75367 -12.39453 -12.27543 -12.23447 -12.05441 -12.00881 -11.48141 -11.45064 -11.37867 -11.07563 -11.06578 -10.82889 -10.65728 -10.56846 -9.93138 -8.76364 -8.29763 -6.45753 -0.19957 0.37471 0.86331 1.06512 1.44195 1.44465 1.49773 1.53856 1.58241 2.28176 2.48215 2.77316 2.99632 3.05603 3.31879 3.63398 3.71126 3.73593 3.90976 3.94054 3.96761 3.99935 4.25525 4.27567 4.35340 4.44652 4.55086 4.56166 4.70017 4.76568 4.80718 5.03486 5.04917 5.08317 5.23207 5.24297 5.42372 5.60793 5.61810 5.82728 6.25221 6.30236 6.63194 6.73196 7.19217 7.33648 7.36242 8.82431 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.029252 B = 0.001784 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.968507 B =15694.816554 C =16309.012078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.519 3.481 12 O -0.583 6.583 13 C -0.139 4.139 14 S 0.100 5.900 15 C 0.163 3.837 16 N -0.319 5.319 17 N -0.301 5.301 18 C 0.166 3.834 19 C 0.006 3.994 20 C -0.144 4.144 21 C 0.064 3.936 22 O -0.404 6.404 23 C 0.064 3.936 24 C -0.143 4.143 25 N -0.304 5.304 26 N -0.584 5.584 27 H 0.269 0.731 28 H -0.005 1.005 29 H -0.006 1.006 30 H 0.412 0.588 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.117 0.883 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.382 0.618 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.903 -33.145 -0.707 34.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.143 3.857 10 N -0.346 5.346 11 C 0.304 3.696 12 O -0.465 6.465 13 C -0.291 4.291 14 S 0.327 5.673 15 C -0.212 4.212 16 N -0.165 5.165 17 N -0.141 5.141 18 C -0.106 4.106 19 C -0.014 4.014 20 C -0.182 4.182 21 C -0.013 4.013 22 O -0.323 6.323 23 C -0.013 4.013 24 C -0.182 4.182 25 N -0.085 5.085 26 N -0.220 5.220 27 H 0.078 0.922 28 H 0.013 0.987 29 H 0.012 0.988 30 H 0.248 0.752 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.202 0.798 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 9.844 -31.963 -0.352 33.447 hybrid contribution 0.711 0.206 -0.449 0.866 sum 10.556 -31.757 -0.801 33.475 Atomic orbital electron populations 1.70131 1.08144 1.28519 1.49916 1.26022 0.95784 1.03767 0.93878 0.85127 0.79051 0.77461 0.77680 1.17831 1.20450 1.20454 1.21647 0.94379 0.90542 1.52915 0.89816 1.18653 0.88556 0.83768 0.94738 1.46089 1.11695 1.04931 1.71917 1.20102 0.88607 0.84402 0.76497 1.90692 1.18330 1.84975 1.52453 1.23671 1.01546 0.93136 1.10755 1.86554 0.96760 0.91969 1.92033 1.27140 1.00340 0.86411 1.07339 1.74793 0.98475 1.20855 1.22332 1.73833 1.26606 0.94843 1.18821 1.25988 0.80303 0.99690 1.04580 1.19838 1.00001 0.83549 0.98061 1.22228 0.99997 0.99327 0.96683 1.22713 0.97290 0.93534 0.87739 1.87960 1.39248 1.90350 1.14721 1.22707 0.97106 0.93559 0.87898 1.22221 1.00061 0.99330 0.96550 1.44996 1.03499 1.04191 1.55814 1.59656 1.12718 1.26426 1.23209 0.92211 0.98734 0.98758 0.75214 0.84368 0.84262 0.86487 0.91952 0.89736 0.90493 0.87572 0.90548 0.87570 0.89782 0.91935 0.79809 0.78701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 2 C 0.01 0.29 5.46 84.66 0.46 0.76 16 3 Si 0.98 42.36 29.54 68.60 2.03 44.38 16 4 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.56 -30.09 9.28 25.60 0.24 -29.85 16 8 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.27 14.35 5.43 85.63 0.46 14.82 16 10 N -0.70 -29.11 5.55 -466.78 -2.59 -31.70 16 11 C 0.52 20.53 7.85 87.66 0.69 21.22 16 12 O -0.58 -27.95 15.86 -3.04 -0.05 -28.00 16 13 C -0.14 -4.07 5.72 71.24 0.41 -3.67 16 14 S 0.10 2.83 21.40 -56.49 -1.21 1.62 16 15 C 0.16 4.30 8.20 179.55 1.47 5.77 16 16 N -0.32 -9.54 11.60 -56.85 -0.66 -10.20 16 17 N -0.30 -8.26 12.17 -49.53 -0.60 -8.87 16 18 C 0.17 3.18 6.65 137.63 0.91 4.10 16 19 C 0.01 0.07 2.66 -11.42 -0.03 0.04 16 20 C -0.14 -1.56 5.40 30.69 0.17 -1.39 16 21 C 0.06 0.49 6.84 72.02 0.49 0.99 16 22 O -0.40 -5.06 10.77 -148.98 -1.60 -6.67 16 23 C 0.06 0.48 6.84 72.01 0.49 0.98 16 24 C -0.14 -1.51 5.40 30.68 0.17 -1.34 16 25 N -0.30 -5.82 3.81 -185.32 -0.71 -6.52 16 26 N -0.58 -6.23 10.37 37.02 0.38 -5.85 16 27 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 28 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 29 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.41 14.29 8.32 -92.71 -0.77 13.52 16 31 H 0.14 3.61 8.14 -2.40 -0.02 3.59 16 32 H 0.14 3.59 8.14 -2.39 -0.02 3.57 16 33 H 0.12 0.34 7.23 -2.39 -0.02 0.33 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.08 0.23 8.14 -2.38 -0.02 0.21 16 37 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.38 2.38 9.21 -210.56 -1.94 0.44 16 43 H 0.39 1.43 8.20 -210.56 -1.73 -0.29 16 Total: -1.00 -80.17 377.97 -2.15 -82.32 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -3.36 Total: 12.29 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 5.93 Total: 12.42 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -3.89 Total: -118.37 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.65 Total: -34.67 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.21 Total: 1.62 kcal Total: -80.17 -2.15 -82.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116139430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.769 kcal (2) G-P(sol) polarization free energy of solvation -80.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds