Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30838 * 125.82920 * 2 1 4 4 N 1.40083 * 108.33473 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.06414 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47151 * 90.02166 * 5 4 3 7 7 H 1.07997 * 120.00262 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99675 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99746 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00118 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47344 * 89.99924 * 10 8 6 12 12 H 1.48495 * 109.47066 * 210.00021 * 10 8 6 13 13 H 1.48506 * 109.46933 * 329.99534 * 10 8 6 14 14 C 1.35797 * 107.86597 * 359.73355 * 4 3 2 15 15 C 1.50695 * 126.21073 * 180.28382 * 14 4 3 16 16 C 1.35642 * 107.58130 * 0.42423 * 14 4 3 17 17 O 1.36189 * 126.06177 * 179.83463 * 16 14 4 18 18 C 1.34839 * 117.00132 * 269.71857 * 17 16 14 19 19 O 1.21647 * 120.00383 * 0.02562 * 18 17 16 20 20 C 1.46500 * 119.99881 * 180.02562 * 18 17 16 21 21 C 1.40412 * 126.57406 * 359.97402 * 20 18 17 22 22 N 1.30971 * 108.77061 * 179.97438 * 21 20 18 23 23 N 1.39906 * 109.58521 * 0.02562 * 22 21 20 24 24 N 1.40025 * 132.50265 * 180.02562 * 23 22 21 25 25 C 1.30847 * 120.65358 * 179.97438 * 24 23 22 26 26 C 1.39724 * 120.97008 * 0.27894 * 25 24 23 27 27 C 1.36566 * 119.93666 * 359.43657 * 26 25 24 28 28 C 1.36735 * 107.88601 * 0.02562 * 23 22 21 29 29 H 1.08998 * 109.46960 * 270.00018 * 1 2 3 30 30 H 1.09000 * 109.47145 * 30.00228 * 1 2 3 31 31 H 1.08998 * 109.47087 * 150.00063 * 1 2 3 32 32 H 1.08999 * 109.46563 * 210.01858 * 5 4 3 33 33 H 1.08995 * 109.47054 * 330.01482 * 5 4 3 34 34 H 0.96994 * 119.99632 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47107 * 270.19608 * 15 14 4 36 36 H 1.09001 * 109.47482 * 30.19423 * 15 14 4 37 37 H 1.09001 * 109.47320 * 150.19251 * 15 14 4 38 38 H 1.07993 * 125.61626 * 0.02562 * 21 20 18 39 39 H 1.08002 * 119.50944 * 179.97438 * 25 24 23 40 40 H 1.08003 * 120.02889 * 179.72160 * 26 25 24 41 41 H 1.08007 * 120.44883 * 180.29448 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2729 1.0608 0.0000 4 7 3.6090 0.6397 -0.0006 5 6 4.7875 1.5099 -0.0013 6 6 5.1927 1.8081 1.4193 7 1 4.6285 1.3915 2.2405 8 6 6.2837 2.6129 1.6704 9 7 6.6370 2.8735 2.9101 10 14 7.2592 3.3341 0.2499 11 1 6.6864 4.6517 -0.1253 12 1 8.6755 3.5088 0.6604 13 1 7.1910 2.4149 -0.9145 14 6 3.6178 -0.7182 0.0051 15 6 4.8394 -1.6006 0.0126 16 6 2.3274 -1.1364 -0.0005 17 8 1.9042 -2.4308 -0.0007 18 6 1.7140 -3.0125 -1.2022 19 8 1.9204 -2.3829 -2.2224 20 6 1.2588 -4.4029 -1.2791 21 6 0.9806 -5.2532 -0.1969 22 7 0.5990 -6.4165 -0.6622 23 7 0.6082 -6.3880 -2.0609 24 7 0.2924 -7.3493 -3.0288 25 6 0.3842 -7.0679 -4.3034 26 6 0.8041 -5.8063 -4.7328 27 6 1.1145 -4.8428 -3.8160 28 6 1.0170 -5.1435 -2.4530 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 5.6080 1.0097 -0.5158 33 1 4.5508 2.4416 -0.5149 34 1 7.4043 3.4399 3.0868 35 1 5.1393 -1.8147 -1.0132 36 1 5.6524 -1.0911 0.5299 37 1 4.6103 -2.5341 0.5266 38 1 1.0663 -4.9909 0.8472 39 1 0.1364 -7.8235 -5.0342 40 1 0.8787 -5.5919 -5.7887 41 1 1.4354 -3.8633 -4.1388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121264710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = 144.500941 kcal Electronic energy + Delta-G solvation = -28574.619292 eV Core-core repulsion = 24460.432635 eV Total energy + Delta-G solvation = -4114.186657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.29803 -41.15535 -39.58040 -38.33622 -36.43546 -34.04946 -33.69894 -32.58174 -31.71968 -31.08208 -30.08650 -29.39791 -26.71275 -26.21763 -25.26289 -24.54250 -22.96305 -22.35330 -21.15173 -19.57969 -19.23157 -18.62169 -17.85414 -17.22787 -17.09194 -16.96951 -16.38037 -16.26483 -15.57375 -15.01845 -14.67224 -14.53992 -14.15322 -13.91852 -13.60470 -13.40870 -13.10382 -13.06941 -12.95105 -12.89383 -12.52245 -12.22661 -12.07918 -12.01336 -11.84476 -11.81158 -11.34516 -11.12706 -11.00211 -10.94628 -10.78411 -10.46900 -10.25650 -10.14682 -9.79539 -9.73810 -8.83434 -8.66260 -8.41626 -7.77246 -6.31494 -4.35823 -0.29790 0.46640 0.89596 1.67462 2.25041 2.46553 2.66181 3.10198 3.10706 3.15107 3.18667 3.24783 3.48478 3.73033 3.84498 4.04451 4.14436 4.16912 4.43809 4.67522 4.78163 4.92416 4.99621 5.11545 5.24526 5.32948 5.42159 5.52702 5.59629 5.71726 5.85007 5.86589 5.88838 6.03213 6.07167 6.23270 6.34427 6.46818 6.57962 6.73088 6.82552 6.92151 7.15510 7.20912 7.60041 8.14626 8.22529 8.32898 8.72798 9.22789 10.80725 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.002522 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.420631 B =11098.095987 C =11345.305169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.063 3.937 3 N -0.276 5.276 4 N -0.316 5.316 5 C 0.231 3.769 6 C -0.545 4.545 7 H 0.083 0.917 8 C 0.081 3.919 9 N -0.883 5.883 10 Si 0.873 3.127 11 H -0.270 1.270 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.110 3.890 15 C -0.095 4.095 16 C -0.096 4.096 17 O -0.246 6.246 18 C 0.527 3.473 19 O -0.504 6.504 20 C -0.251 4.251 21 C 0.122 3.878 22 N -0.255 5.255 23 N -0.171 5.171 24 N -0.212 5.212 25 C 0.117 3.883 26 C -0.153 4.153 27 C -0.030 4.030 28 C 0.112 3.888 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.270 0.730 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.219 0.781 39 H 0.209 0.791 40 H 0.163 0.837 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 -18.954 -15.293 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 N -0.100 5.100 4 N -0.096 5.096 5 C 0.113 3.887 6 C -0.584 4.584 7 H 0.101 0.899 8 C -0.124 4.124 9 N -0.520 5.520 10 Si 0.699 3.301 11 H -0.195 1.195 12 H -0.204 1.204 13 H -0.188 1.188 14 C -0.023 4.023 15 C -0.153 4.153 16 C -0.149 4.149 17 O -0.157 6.157 18 C 0.372 3.628 19 O -0.392 6.392 20 C -0.266 4.266 21 C -0.060 4.060 22 N -0.079 5.079 23 N -0.036 5.036 24 N -0.024 5.024 25 C -0.075 4.075 26 C -0.178 4.178 27 C -0.058 4.058 28 C -0.014 4.014 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.235 0.765 39 H 0.226 0.774 40 H 0.180 0.820 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.544 -19.290 -14.454 26.726 hybrid contribution 1.158 1.198 -1.286 2.105 sum -10.386 -18.092 -15.740 26.133 Atomic orbital electron populations 1.20044 0.87092 1.02468 1.02676 1.22272 0.96898 0.89825 1.01279 1.77366 0.87035 1.21598 1.24028 1.48853 1.05686 1.03483 1.51567 1.20097 0.79011 0.89617 1.00008 1.21149 1.14320 1.32727 0.90158 0.89938 1.24794 0.96527 0.95219 0.95832 1.69865 1.26842 1.36609 1.18658 0.86907 0.80053 0.80566 0.82623 1.19508 1.20442 1.18848 1.21000 0.95935 0.86013 0.99313 1.20466 0.94039 0.98001 1.02827 1.17498 0.90512 0.81818 1.25120 1.84756 1.76860 1.24023 1.30047 1.20254 0.74277 0.85327 0.82977 1.90824 1.48060 1.64387 1.35910 1.18795 1.21942 0.94545 0.91330 1.24569 0.92090 0.88396 1.00896 1.77798 1.27119 1.21771 0.81233 1.51025 1.41342 1.06020 1.05254 1.75940 1.16051 1.11706 0.98733 1.24365 0.93416 0.98059 0.91690 1.21791 1.00466 0.92898 1.02616 1.21240 0.93801 1.02087 0.88632 1.19683 0.98955 0.87818 0.94946 0.90511 0.90984 0.91590 0.93117 0.93145 0.92009 0.90768 0.89127 0.90073 0.76474 0.77426 0.81975 0.81053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.44 36.01 0.38 -0.58 16 2 C 0.06 1.26 7.22 -82.29 -0.59 0.66 16 3 N -0.28 -6.30 12.57 33.73 0.42 -5.88 16 4 N -0.32 -7.27 3.62 -58.03 -0.21 -7.48 16 5 C 0.23 5.50 4.91 -5.19 -0.03 5.47 16 6 C -0.55 -15.00 9.94 -34.44 -0.34 -15.35 16 7 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 8 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 9 N -0.88 -25.85 13.96 55.43 0.77 -25.08 16 10 Si 0.87 19.87 27.47 -169.99 -4.67 15.20 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 14 C 0.11 2.25 6.97 -81.77 -0.57 1.68 16 15 C -0.10 -1.60 9.89 36.00 0.36 -1.24 16 16 C -0.10 -1.86 5.36 -39.79 -0.21 -2.08 16 17 O -0.25 -4.07 9.97 -25.98 -0.26 -4.33 16 18 C 0.53 8.14 7.87 34.06 0.27 8.41 16 19 O -0.50 -8.86 15.55 -19.38 -0.30 -9.16 16 20 C -0.25 -3.24 6.16 -104.75 -0.65 -3.89 16 21 C 0.12 1.37 11.78 -17.10 -0.20 1.17 16 22 N -0.26 -3.26 12.61 30.76 0.39 -2.87 16 23 N -0.17 -2.07 5.25 32.44 0.17 -1.90 16 24 N -0.21 -2.04 11.96 30.60 0.37 -1.68 16 25 C 0.12 0.57 11.28 -17.42 -0.20 0.38 16 26 C -0.15 -0.73 10.04 -39.63 -0.40 -1.12 16 27 C -0.03 -0.26 9.75 -39.56 -0.39 -0.64 16 28 C 0.11 1.32 6.83 -84.05 -0.57 0.74 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 1.12 6.77 -51.93 -0.35 0.77 16 33 H 0.05 1.19 7.57 -51.93 -0.39 0.80 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.59 7.78 -51.93 -0.40 1.18 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.22 1.76 8.06 -52.49 -0.42 1.33 16 39 H 0.21 -0.02 8.06 -52.49 -0.42 -0.44 16 40 H 0.16 0.15 8.06 -52.48 -0.42 -0.27 16 41 H 0.17 1.46 7.18 -52.48 -0.38 1.08 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -36.52 368.16 -5.51 -42.03 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.50 Total: -0.15 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -3.24 Total: -4.26 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 1.91 Total: -44.89 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.56 Total: -13.49 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.52 -5.51 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121264710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.535 kcal (2) G-P(sol) polarization free energy of solvation -36.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds